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clinicaltrials
Commit 5c8b59fa authored by david Chavalarias's avatar david Chavalarias
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adapation for nma

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data/All/Distributional.gexf deleted 100644 → 0
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data/All_/Conditionnal.gexf deleted 100644 → 0
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data/All_/project_conf.json deleted 100755 → 0
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{
"Conditionnal.gexf": {
"node0": {
"name": "term",
"reldbs": {
"csv": {
"file": "../clinicaltrials.csv",
"qcols": ["title","abstract"],
"template": "bib_details"
}
}
}
}
}
data/Treatments_/project_conf.json deleted 100755 → 0
View file @ 01a3ad3a
{
"Conditionnal.gexf": {
"node0": {
"name": "term",
"reldbs": {
"csv": {
"file": "../clinicaltrials.csv",
"qcols": ["title","abstract"],
"template": "bib_details"
}
}
}
}
}
data/clinicaltrials.csv
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data/conditionnal/ClinicalTrials_c_2020_05_05.gexf 0 → 100644
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data/Treatments/project_conf.json → data/conditionnal/project_conf.json
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{
"Distributional.gexf": {
"ClinicalTrials_c_2020_05_05.gexf": {
"node0": {
"name": "term",
"reldbs": {
......
data/distributional/ClinicalTrials_d_2020_05_05.gexf 0 → 100644
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data/All/project_conf.json → data/distributional/project_conf.json
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{
"Distributionnal.gexf": {
"ClinicalTrials_d_2020_05_05.gexf": {
"node0": {
"name": "term",
"reldbs": {
......@@ -12,4 +12,3 @@
}
}
}
data/graphs.zip 0 → 100644
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File added
data/test/hit_templates/bib_details.html deleted 100644 → 0
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<li class="searchhit" title="$${score}">
<p>
<b>$${tit}</b>
by
<span class="author">$${au}</span>
,
<i>$${src}</i>
[$${date}]
</p>
<p>
<span class="hit-keywords">
$${kws}
</span>
<span class="hit-text">
$${txt}
</span>
</p>
</li>
data/test/legends.json deleted 100644 → 0
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{
"someOccs": {
"col": "gradient",
"n": 3,
"binmode": "samepop",
"legend": "Test Occurrences"
},
"country": {"col": "cluster" , "legend": "Country", "binmode": "off" },
"myValue": {
"col": "heatmap",
"n": 2,
"binmode": "samerange",
"legend": "Some Important Value"
}
}
data/test/mini.csv deleted 100644 → 0
View file @ 01a3ad3a
"title" "pubdate" "author" "journal" "keywords" "text"
"python is nice" "2001" "Asher,Lutz" "areview" "python, forest" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"python is cool" "2003" "-cc-" "areview" "python, ocean" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"scala is great" "2003" "Odersky" "areviewB" "scala, crop" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"php is expressive" "2005" "Nixon" "areview" "php, mysql" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"php is expressive2" "2010" "-bb-" "areviewB" "php, web" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"javascript rules the web" "2005" "someguy,anotherguy" "areviewC" "javascript, web" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"a cool article" "2008" "-dd-" "areview" "coolness, ecosystem" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"another cool article" "2001" "-aa-" "areview" "coastal, coolness" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"a js primer" "2004" "mandelbrot" "areviewC" "coolness, ecosystem, grain yield" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
"a scala js primer" "2004" "somebody" "areviewC" "keyword, ecosystem, growth response" "hic in Palatio prima urbi fundamenta ieci. arcem iam scelere emptam Sabini habent"
data/test/mini.gexf deleted 100644 → 0
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<gexf xmlns="http://www.gexf.net/1.1draft" xmlns:viz="http://www.gephi.org/gexf/viz" version="1.1">
<graph defaultedgetype="undirected" type="static">
<attributes class="node" type="static">
<attribute id="0" title="category" type="string"> </attribute>
<attribute id="1" title="country" type="string"> </attribute>
<attribute id="2" title="myValue" type="string"> </attribute>
<attribute id="3" title="someOccs" type="string"> </attribute>
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<node id="T::0" label="scalajs">
<viz:size value="1"/>
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<attvalue for="3" value="1032"/>
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<node id="T::4" label="php">
<viz:size value="1"/>
<attvalues>
<attvalue for="0" value="term"/>
<attvalue for="3" value="655"/>
</attvalues>
</node>
<node id="P::0" label="-bb-">
<viz:size value="1"/>
<attvalues>
<attvalue for="0" value="person"/>
<attvalue for="1" value="China"/>
<attvalue for="2" value="14.995"/>
</attvalues>
</node>
<node id="P::1" label="-aa-">
<viz:size value="1"/>
<attvalues>
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<attvalue for="1" value="Bhutan"/>
<attvalue for="2" value="8.9572"/>
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<node id="P::2" label="-dd-">
<viz:size value="1"/>
<attvalues>
<attvalue for="0" value="person"/>
<attvalue for="1" value="Brazil"/>
<attvalue for="2" value="4.6753"/>
</attvalues>
</node>
<node id="P::3" label="-cc-">
<viz:size value="1"/>
<attvalues>
<attvalue for="0" value="person"/>
<attvalue for="1" value="France"/>
<attvalue for="2" value="0.8481"/>
</attvalues>
</node>
<node id="P::4" label="-cc-">
<viz:size value="1"/>
<attvalues>
<attvalue for="0" value="person"/>
<attvalue for="1" value="Poland"/>
<attvalue for="2" value="8.6959"/>
</attvalues>
</node>
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<edges>
<!-- bipartite 1|1 -->
<edge id="1" source="T::1" target="P::1"/>
<edge id="2" source="T::1" target="P::2"/>
<edge id="3" source="T::2" target="P::3"/>
<edge id="4" source="T::3" target="P::2"/>
<edge id="5" source="T::3" target="P::3"/>
<edge id="6" source="T::4" target="P::0"/>
<edge id="7" source="T::4" target="P::3"/>
<edge id="8" source="T::1" target="P::4"/>
<edge id="9" source="T::4" target="P::4"/>
<!-- intra sem 1|0 -->
<edge id="10" source="T::2" target="T::3"/>
<edge id="11" source="T::3" target="T::4"/>
<edge id="12" source="T::0" target="T::1"/>
<edge id="13" source="T::0" target="T::3"/>
<!-- intra soc 0|1 -->
<edge id="14" source="P::0" target="P::1"/>
<edge id="15" source="P::1" target="P::2"/>
<edge id="16" source="P::2" target="P::3"/>
<edge id="17" source="P::1" target="P::4"/>
</edges>
</graph>
</gexf>
data/test/project_conf.json deleted 100644 → 0
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{
"mini.gexf": {
"node0": {
"name": "term",
"reldbs": {
"csv": {
"file": "mini.csv",
"qcols": ["title","keywords","text"],
"template": "bib_details"
},
"twitter": {}
}
},
"node1": {
"name": "person",
"reldbs": {
"csv": {
"file": "mini.csv",
"qcols": ["author"],
"template": "bib_details"
}
}
}
}
}
explorerjs.html deleted 100644 → 0
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images/coronavirus.svg 0 → 100644
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index.html
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server_menu.json
View file @ 5c8b59fa
{
"data/Treatments_": [
"Conditionnal.gexf"
],"data/Treatments": [
"Distributional.gexf"
"data/conditionnal": [
"ClinicalTrials_c_2020_05_05.gexf"
],"data/distributional": [
"ClinicalTrials_d_2020_05_05.gexf"
],
"data/All_": [
"Conditionnal.gexf"
],
"data/All": [
"Distributional.gexf"
],
"first_project": "data/Treatments_"
"first_project": "data/conditionnal"
}
settings_explorerjs.js
View file @ 5c8b59fa
......@@ -7,7 +7,7 @@ TW.conf = (function(TW){
let TWConf = {}
TWConf.branding = 'Coronavirus Clinical Trials' // <--- name displayed in upper left
TWConf.brandingLink = 'https://iscpif.fr/projects/coronavirus-related-projects' // <--- link to "home"
TWConf.brandingLink = 'http://www.covid-nma.com/' // <--- link to "home"
// ==========================
......@@ -179,16 +179,16 @@ TW.conf = (function(TW){
// if fa2Available, the auto-run config:
TWConf.fa2Enabled= false; // fa2 auto-run at start and after graph modified ?
TWConf.fa2Milliseconds=4000; // duration of auto-run
TWConf.minNodesForAutoFA2 = 5 // graph size threshold to auto-run
TWConf.fa2Enabled= true; // fa2 auto-run at start and after graph modified ?
TWConf.fa2Milliseconds=1000; // duration of auto-run
TWConf.minNodesForAutoFA2 = 10000 // graph size threshold to auto-run
// Full-text search
// ----------------
TWConf.maxSearchResults = 10 // how many "top papers" to display
TWConf.maxSearchResults = 20 // how many "top papers" to display
TWConf.minLengthAutoComplete = 1 // how many chars to type for autocomp
TWConf.maxSuggestionsAutoComplete = 10 // how many suggestions by autocomp
TWConf.maxSuggestionsAutoComplete = 15 // how many suggestions by autocomp
TWConf.strSearchBar = "Search"
......
twlibs/css/twjs.css
View file @ 5c8b59fa
......@@ -20,6 +20,8 @@ html.waiting {
cursor: wait;
}
#sigma-contnr {
position: fixed;
top: 105px;
......@@ -314,7 +316,7 @@ ul.infoitems {
padding: 10px;
border: 1px solid #555;
border-radius: 0 4px 4px 4px;
background-color: #BBB;
background-color: #1a80b6;
display: block;
}
......@@ -422,3 +424,43 @@ ul.infoitems {
#search_table td label {
font-weight:normal;
}
/* custom fpr nma */
.navbar {
background-color: #1a80b6;
border: 0px solid transparent;
}
body {
color: #fff;
}
.navbar-default .navbar-nav > li > a {
color: #f0f0f0;
}
.btn-primary.disabled.focus, .btn-primary.disabled:focus, .btn-primary.disabled:hover, .btn-primary[disabled].focus, .btn-primary[disabled]:focus, .btn-primary[disabled]:hover, fieldset[disabled] .btn-primary.focus, fieldset[disabled] .btn-primary:focus, fieldset[disabled] .btn-primary:hover {
background-color: #288008;
}
.btn-primary {
background-color: #0f3739;
}
.btn-sm{
margin-left: ($spacer * .5) !important;
}
body {
color: #1a80b6;
}
.slider-legend{
color: #f0f0f0;
}
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