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clinicaltrials
Commit e8c8c22d authored by PkSM3's avatar PkSM3
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portable on the way

parent 0d9cc033
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Showing with 105452 additions and 96 deletions
data/141002Syneco.gexf 0 → 100644
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tinawebJS/js/enviroment.js
View file @ e8c8c22d
...@@ -176,6 +176,7 @@ function EdgeWeightFilter(sliderDivID , type_attrb , type , criteria) { ...@@ -176,6 +176,7 @@ function EdgeWeightFilter(sliderDivID , type_attrb , type , criteria) {
// AlgorithmForSliders ( partialGraph._core.graph.edges , "label" , "nodes2" , "weight") // AlgorithmForSliders ( partialGraph._core.graph.edges , "label" , "nodes2" , "weight")
// AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "Document" , "size") // AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "Document" , "size")
// AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "NGram" , "size") // AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "NGram" , "size")
if(partialGraph._core.graph.edges.length==0) return;
var filterparams = AlgorithmForSliders ( partialGraph._core.graph.edges , type_attrb , type , criteria) var filterparams = AlgorithmForSliders ( partialGraph._core.graph.edges , type_attrb , type , criteria)
var steps = filterparams["steps"] var steps = filterparams["steps"]
...@@ -258,6 +259,8 @@ function NodeWeightFilter(sliderDivID , type_attrb , type , criteria) { ...@@ -258,6 +259,8 @@ function NodeWeightFilter(sliderDivID , type_attrb , type , criteria) {
// AlgorithmForSliders ( partialGraph._core.graph.edges , "label" , "nodes2" , "weight") // AlgorithmForSliders ( partialGraph._core.graph.edges , "label" , "nodes2" , "weight")
// AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "Document" , "size") // AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "Document" , "size")
// AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "NGram" , "size") // AlgorithmForSliders ( partialGraph._core.graph.nodes , "type" , "NGram" , "size")
if(partialGraph._core.graph.nodes.length==0) return;
var filterparams = AlgorithmForSliders ( partialGraph._core.graph.nodes , type_attrb , type , criteria) var filterparams = AlgorithmForSliders ( partialGraph._core.graph.nodes , type_attrb , type , criteria)
var steps = filterparams["steps"] var steps = filterparams["steps"]
var finalarray = filterparams["finalarray"] var finalarray = filterparams["finalarray"]
......
tinawebJS/js/main.js
View file @ e8c8c22d
...@@ -7,6 +7,7 @@ $( window ).resize(function() { ...@@ -7,6 +7,7 @@ $( window ).resize(function() {
});// === / monitor windows resize === // });// === / monitor windows resize === //
mainfile = (isUndef(getUrlParam.file))?false:true;
// === [what to do at start] === // // === [what to do at start] === //
if (mainfile) { if (mainfile) {
// http://localhost/adasd/explorerjs.html?file=data/140907Syneco.gexf // http://localhost/adasd/explorerjs.html?file=data/140907Syneco.gexf
...@@ -194,11 +195,26 @@ function bringTheNoise(pathfile,type){ ...@@ -194,11 +195,26 @@ function bringTheNoise(pathfile,type){
// < === EXTRACTING DATA === > // < === EXTRACTING DATA === >
if(mainfile) { if(mainfile) {
pr("mainfile: "+mainfile) pr("mainfile: "+mainfile)
parse(decodeURIComponent(pathfile)); parse(decodeURIComponent(pathfile));
if(type=="mono") { if(type=="mono") {
onepartiteExtract(); onepartiteExtract();
$("#left").hide(); $("#left").hide();
} else if(type=="bi") fullExtract(); }
if(type=="bi") {
semanticConverged=true;
pr("here in fullextract")
fullExtract();
$("#closeloader").click();
pushSWClick("social");
pr(partialGraph._core.graph.nodes.length)
pr(partialGraph._core.graph.edges.length)
}
partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8).draw(2,2,2); partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8).draw(2,2,2);
theListeners(); theListeners();
...@@ -700,6 +716,7 @@ function SigmaLayouting( URL, DATA, NAME) { ...@@ -700,6 +716,7 @@ function SigmaLayouting( URL, DATA, NAME) {
partialGraph.draw(); partialGraph.draw();
EdgeWeightFilter("#sliderBEdgeWeight", "label" , "nodes2", "weight"); EdgeWeightFilter("#sliderBEdgeWeight", "label" , "nodes2", "weight");
NodeWeightFilter ( "#sliderBNodeWeight" , "type" , "NGram" , "size") NodeWeightFilter ( "#sliderBNodeWeight" , "type" , "NGram" , "size")
$("#colorGraph").hide();
} }
console.log("Parsing and FA2 complete for SemanticGraph."); console.log("Parsing and FA2 complete for SemanticGraph.");
......
tinawebJS/js/methods.js
View file @ e8c8c22d
...@@ -198,6 +198,8 @@ function alertCheckBox(eventCheck){ ...@@ -198,6 +198,8 @@ function alertCheckBox(eventCheck){
// AaBb: Socio-Semantic // AaBb: Socio-Semantic
function RefreshState(newNOW){ function RefreshState(newNOW){
pr("\t\t\tin RefreshState newNOW:_"+newNOW+"_.")
if (newNOW!="") { if (newNOW!="") {
PAST = NOW; PAST = NOW;
NOW = newNOW; NOW = newNOW;
...@@ -1467,11 +1469,7 @@ function changeToMeso(iwannagraph) { ...@@ -1467,11 +1469,7 @@ function changeToMeso(iwannagraph) {
// unHide(id); // unHide(id);
} }
} }
createEdgesForExistingNodes(iwannagraph);/**/ createEdgesForExistingNodes(iwannagraph);/**/
greyEverything();
for(var i in selections) markAsSelected(i,true);
overNodes=true;
} }
if(swclickPrev=="semantic") { if(swclickPrev=="semantic") {
...@@ -1493,7 +1491,7 @@ function changeToMeso(iwannagraph) { ...@@ -1493,7 +1491,7 @@ function changeToMeso(iwannagraph) {
} }
if(swclickPrev=="sociosemantic") { if(swclickPrev=="sociosemantic") {
hideEverything(); // hideEverything();
for(var i in selections) { for(var i in selections) {
if(Nodes[i].type==catSoc){ if(Nodes[i].type==catSoc){
...@@ -1512,10 +1510,6 @@ function changeToMeso(iwannagraph) { ...@@ -1512,10 +1510,6 @@ function changeToMeso(iwannagraph) {
} }
} }
for(var i in selections) {
markAsSelected(i,true);
}
overNodes=true;
} }
} }
} }
...@@ -1593,6 +1587,14 @@ function changeToMeso(iwannagraph) { ...@@ -1593,6 +1587,14 @@ function changeToMeso(iwannagraph) {
// // partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8); // // partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8);
// partialGraph.refresh(); // partialGraph.refresh();
// partialGraph.startForceAtlas2(); // partialGraph.startForceAtlas2();
MultipleSelection(Object.keys(selections));
// greyEverything();
// for(var i in selections) markAsSelected(i,true);
// overNodes=true;
$('.gradient').css({"background-size":"90px 90px"}); $('.gradient').css({"background-size":"90px 90px"});
} }
...@@ -1649,6 +1651,7 @@ function changeToMacro(iwannagraph) { ...@@ -1649,6 +1651,7 @@ function changeToMacro(iwannagraph) {
for(var e in Edges) { for(var e in Edges) {
if(Edges[e].label=="nodes1" || Edges[e].label=="nodes2"){ if(Edges[e].label=="nodes1" || Edges[e].label=="nodes2"){
st=e.split(";"); st=e.split(";");
if(Edges[st[0]+";"+st[1]] && Edges[st[1]+";"+st[0]] && if(Edges[st[0]+";"+st[1]] && Edges[st[1]+";"+st[0]] &&
Edges[st[0]+";"+st[1]].hidden==true && Edges[st[0]+";"+st[1]].hidden==true &&
......
tinawebJS/js/sigma.parseCustom.js
View file @ e8c8c22d
...@@ -29,7 +29,7 @@ function scanCategories() { ...@@ -29,7 +29,7 @@ function scanCategories() {
attvalueNode = attvalueNodes[k]; attvalueNode = attvalueNodes[k];
attr = attvalueNode.getAttribute('for'); attr = attvalueNode.getAttribute('for');
val = attvalueNode.getAttribute('value'); val = attvalueNode.getAttribute('value');
pr(val) // pr(val)
if (attr=="category") categories[val]=val; if (attr=="category") categories[val]=val;
} }
} }
...@@ -403,24 +403,20 @@ function fullExtract(){ ...@@ -403,24 +403,20 @@ function fullExtract(){
/* Para asignar tamaño a los NGrams */ /* Para asignar tamaño a los NGrams */
if(atts["category"]===categoriesIndex[1]) { if(atts["category"]===categoriesIndex[1]) {
if(typeof(node.size)==="undefined") node.size=parseInt(val).toFixed(2); if(typeof(node.size)==="undefined") node.size=parseInt(val).toFixed(2);
/* Type of Node*/
//console.log(val);
//if(val<30) val=30;
//Nodes[id].size=(parseInt(val).toFixed(2)*5)/70;
// Nodes[id].size=parseInt(val).toFixed(2);
// node.size=Nodes[id].size;
// if(id.charAt(0)=="D") {
// Nodes[id].size = "5";
// node.size = "5";
// }
} }
/* Para asignar tamaño a los NGrams */ /* Para asignar tamaño a los NGrams */
} }
//console.log(node.attributes); //console.log(node.attributes);
nodecat=node.attributes["category"]; nodecat=node.attributes["category"];
nodew=parseInt(node.attributes["weight"]); nodew=parseInt(node.attributes["weight"]);
if( nodecat===categoriesIndex[1]){ if( nodecat===categoriesIndex[1]){
node.type=catSoc; node.type=catSoc;
node.id = "D::"+node.id;
node.shape="square"; node.shape="square";
numberOfDocs++; numberOfDocs++;
//node.size=desirableScholarSize; //node.size=desirableScholarSize;
...@@ -428,34 +424,30 @@ function fullExtract(){ ...@@ -428,34 +424,30 @@ function fullExtract(){
} }
else { else {
node.type=catSem; node.type=catSem;
node.id = "N::"+node.id;
numberOfNGrams++; numberOfNGrams++;
if(typeof(node.size)==="undefined") node.size=nodew; if(isUndef(node.size)) node.size=nodew;
} }
if(parseInt(node.size) < parseInt(minNodeSize)) minNodeSize= node.size; if(parseInt(node.size) < parseInt(minNodeSize)) minNodeSize= node.size;
if(parseInt(node.size) > parseInt(maxNodeSize)) maxNodeSize= node.size; if(parseInt(node.size) > parseInt(maxNodeSize)) maxNodeSize= node.size;
// Create Node // Create Node
Nodes[id] = node // The graph node
//pr(Nodes[id]); Nodes[node.id] = node // The graph node
} }
} }
//New scale for node size: now, between 2 and 5 instead [1,70] //New scale for node size: now, between 2 and 5 instead [1,70]
for(var i in Nodes){ for(var i in Nodes){
normalizedSize=desirableNodeSizeMIN+(Nodes[i].size-1)*((desirableNodeSizeMAX-desirableNodeSizeMIN)/(parseInt(maxNodeSize)-parseInt(minNodeSize))); normalizedSize=desirableNodeSizeMIN+(Nodes[i].size-1)*((desirableNodeSizeMAX-desirableNodeSizeMIN)/(parseInt(maxNodeSize)-parseInt(minNodeSize)));
Nodes[i].size = ""+normalizedSize; Nodes[i].size = ""+normalizedSize;
if(Nodes[i].type==catSem) { nodeK = Nodes[i];
nodeK = Nodes[i]; if(Nodes[i].type==catSoc) partialGraph.addNode(i,nodeK);
nodeK.hidden=true;
partialGraph.addNode(i,nodeK);
delete Nodes[i].hidden;
}
else {
partialGraph.addNode(i,Nodes[i]);
unHide(i);
}
} }
var edgeId = 0; var edgeId = 0;
var edgesNodes = gexf.getElementsByTagName('edges'); var edgesNodes = gexf.getElementsByTagName('edges');
for(i=0; i<edgesNodes.length; i++){ for(i=0; i<edgesNodes.length; i++){
...@@ -465,7 +457,13 @@ function fullExtract(){ ...@@ -465,7 +457,13 @@ function fullExtract(){
var edgeNode = edgeNodes[j]; var edgeNode = edgeNodes[j];
var source = edgeNode.getAttribute('source'); var source = edgeNode.getAttribute('source');
var target = edgeNode.getAttribute('target'); var target = edgeNode.getAttribute('target');
source = (Nodes["D::"+source])? ("D::"+source):("N::"+source)
target = (Nodes["D::"+target])? ("D::"+target):("N::"+target)
var indice=source+";"+target; var indice=source+";"+target;
// pr(indice)
var edge = { var edge = {
id: indice, id: indice,
...@@ -486,7 +484,8 @@ function fullExtract(){ ...@@ -486,7 +484,8 @@ function fullExtract(){
var attvalueNode = attvalueNodes[k]; var attvalueNode = attvalueNodes[k];
var attr = attvalueNode.getAttribute('for'); var attr = attvalueNode.getAttribute('for');
var val = attvalueNode.getAttribute('value'); var val = attvalueNode.getAttribute('value');
if(k==1) {
if(k=="category") {
kind=val; kind=val;
edge.label=val; edge.label=val;
} }
...@@ -501,78 +500,102 @@ function fullExtract(){ ...@@ -501,78 +500,102 @@ function fullExtract(){
}); });
} }
// pr(edge)
idS=Nodes[edge.sourceID].type.charAt(0); idS=Nodes[edge.sourceID].type;
idT=Nodes[edge.targetID].type.charAt(0); idT=Nodes[edge.targetID].type;
//pr(idS+";"+idT);
if(idS=="D" && idT=="D"){ Edges[indice] = edge;
edge.label="nodes1";
if( (typeof partialGraph._core.graph.edgesIndex[target+";"+source])=="undefined" ){ if(idS==catSoc && idT==catSoc){
edge.hidden=false; // pr("anything here?")
}
else edge.hidden=true; edge.label = "nodes1";
if((typeof nodes1[source])=="undefined"){ if(isUndef(nodes1[source])) {
nodes1[source] = { nodes1[source] = {
label: Nodes[source].label, label: Nodes[source].label,
neighbours: [] neighbours: []
}; };
nodes1[source].neighbours.push(target);
} }
else nodes1[source].neighbours.push(target); if(isUndef(nodes1[target])) {
nodes1[target] = {
// if((typeof nodes1[target])=="undefined"){ label: Nodes[target].label,
// nodes1[target] = {
// label: Nodes[target].label,
// neighbours: []
// };
// nodes1[target].neighbours.push(source);
// }
// else nodes1[target].neighbours.push(source);
}
if(idS=="N" && idT=="N"){
edge.label="nodes2";
//pr("nodes2");
edge.hidden=true;
if((typeof nodes2[source])=="undefined"){
nodes2[source] = {
label: Nodes[source].label,
neighbours: [] neighbours: []
}; };
nodes2[source].neighbours.push(target); }
} nodes1[source].neighbours.push(target);
else nodes2[source].neighbours.push(target); nodes1[target].neighbours.push(source);
// partialGraph.addEdge(indice,source,target,edge);
} }
if((idS=="D" && idT=="N")||(idS=="N" && idT=="D")){
edge.label="bipartite"; if(idS==catSem && idT==catSem){
//pr("bipartite"); edge.label = "nodes2";
edge.hidden=true;
// Document to NGram if(isUndef(nodes2[source])) {
if((typeof bipartiteD2N[source])=="undefined"){ nodes2[source] = {
bipartiteD2N[source] = {
label: Nodes[source].label, label: Nodes[source].label,
neighbours: [] neighbours: []
}; };
bipartiteD2N[source].neighbours.push(target);
} }
else bipartiteD2N[source].neighbours.push(target); if(isUndef(nodes2[target])) {
nodes2[target] = {
// NGram to Document
if((typeof bipartiteN2D[target])=="undefined"){
bipartiteN2D[target] = {
label: Nodes[target].label, label: Nodes[target].label,
neighbours: [] neighbours: []
}; };
}
nodes2[source].neighbours.push(target);
nodes2[target].neighbours.push(source);
// otherGraph.addEdge(indice,source,target,edge);
}
if((idS==catSoc && idT==catSem)||(idS==catSem && idT==catSoc)) {
edge.label = "bipartite";
s = edge.sourceID
// // Source is Document
if(Nodes[s].type == catSoc) {
if(isUndef(bipartiteD2N[source])) {
bipartiteD2N[source] = {
label: Nodes[source].label,
neighbours: []
};
}
if(isUndef(bipartiteN2D[target])) {
bipartiteN2D[target] = {
label: Nodes[target].label,
neighbours: []
};
}
bipartiteD2N[source].neighbours.push(target);
bipartiteN2D[target].neighbours.push(source); bipartiteN2D[target].neighbours.push(source);
// // Source is NGram
} else {
if(isUndef(bipartiteN2D[source])) {
bipartiteN2D[source] = {
label: Nodes[source].label,
neighbours: []
};
}
if(isUndef(bipartiteD2N[target])) {
bipartiteD2N[target] = {
label: Nodes[target].label,
neighbours: []
};
}
bipartiteN2D[source].neighbours.push(target);
bipartiteD2N[target].neighbours.push(source);
} }
else bipartiteN2D[target].neighbours.push(source);
} }
partialGraph.addEdge(indice,source,target,edge);
delete edge.hidden;
Edges[indice]=edge;
} }
} }
} }
...@@ -662,7 +685,7 @@ function extractFromJson(data,seed){ ...@@ -662,7 +685,7 @@ function extractFromJson(data,seed){
var source = edgesNodes[i].s; var source = edgesNodes[i].s;
var target = edgesNodes[i].t; var target = edgesNodes[i].t;
var indice=source+";"+target; var indice=source+";"+target;
if(indice.indexOf("D::593")!==-1) pr(indice) // if(indice.indexOf("D::593")!==-1) pr(indice)
var edge = { var edge = {
id: indice, id: indice,
sourceID: source, sourceID: source,
...@@ -765,5 +788,5 @@ function extractFromJson(data,seed){ ...@@ -765,5 +788,5 @@ function extractFromJson(data,seed){
//edge.hidden=false/**///should be commented //edge.hidden=false/**///should be commented
} }
} }
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