module CLI.Phylo.Common where

import Control.Concurrent.Async (mapConcurrently)
import Crypto.Hash.SHA256 (hash)
import Data.Aeson
import Data.ByteString.Char8 qualified as C8
import Data.List  (nub, tail)
import Data.List.Split
import Data.Maybe (fromJust)
import Data.Text  (unpack, replace, pack)
import Data.Text qualified as T
import Data.Vector qualified as Vector
import Gargantext.API.Ngrams.Prelude (toTermList)
import Gargantext.API.Ngrams.Types
import Gargantext.Core.Text.Context (TermList)
import Gargantext.Core.Text.Corpus.Parsers (FileFormat(..), FileType(..), parseFile)
import Gargantext.Core.Text.Corpus.Parsers.TSV (tsv_title, tsv_abstract, tsv_publication_year, tsv_publication_month, tsv_publication_day, tsv'_source, tsv'_title, tsv'_abstract, tsv'_publication_year, tsv'_publication_month, tsv'_publication_day, tsv'_weight)
import Gargantext.Core.Text.Corpus.Parsers.TSV qualified as Tsv
import Gargantext.Core.Text.List.Formats.TSV (tsvMapTermList)
import Gargantext.Core.Text.Ngrams (NgramsType(..))
import Gargantext.Core.Text.Terms.WithList (Patterns, buildPatterns, extractTermsWithList)
import Gargantext.Core.Types.Main (ListType(..))
import Gargantext.Core.Viz.Phylo
import Gargantext.Core.Viz.Phylo.API.Tools
import Gargantext.Core.Viz.Phylo.PhyloTools  (toPeriods, getTimePeriod, getTimeStep)
import Gargantext.Database.Admin.Types.Hyperdata (HyperdataDocument(..))
import Gargantext.Prelude hiding (hash, replace)
import Prelude qualified
import System.Directory (listDirectory)

data Backup = BackupPhyloWithoutLink | BackupPhylo deriving (Show)

---------------
-- | Tools | --
---------------

-- | To get all the files in a directory or just a file
getFilesFromPath :: FilePath -> IO [FilePath]
getFilesFromPath path = do
  if (isSuffixOf "/" path)
    then (listDirectory path)
    else return [path]

----------------
-- | Parser | --
----------------

-- | To filter the Ngrams of a document based on the termList
termsInText :: Patterns -> Text -> [Text]
termsInText pats txt = nub $ concat $ map (map unwords) $ extractTermsWithList pats txt


-- | To transform a Wos file (or [file]) into a list of Docs
wosToDocs :: Int -> Patterns -> TimeUnit -> FilePath -> IO [Document]
wosToDocs limit patterns time path = do
      files <- getFilesFromPath path
      take limit
        <$> map (\d -> let title = fromJust $ _hd_title d
                           abstr = if (isJust $ _hd_abstract d)
                                   then fromJust $ _hd_abstract d
                                   else ""
                        in Document (toPhyloDate
                                      (fromIntegral $ fromJust $ _hd_publication_year d)
                                      (fromJust $ _hd_publication_month d)
                                      (fromJust $ _hd_publication_day d) time)
                                    (toPhyloDate'
                                      (fromIntegral $ fromJust $ _hd_publication_year d)
                                      (fromJust $ _hd_publication_month d)
                                      (fromJust $ _hd_publication_day d) time)
                                    (termsInText patterns $ title <> " " <> abstr) Nothing [] time)
        <$> concat
        <$> mapConcurrently (\file ->
              filter (\d -> (isJust $ _hd_publication_year d)
                         && (isJust $ _hd_title d))
                <$> fromRight [] <$> parseFile WOS Plain (path <> file) ) files


-- To transform a Tsv file into a list of Document
tsvToDocs :: CorpusParser -> Patterns -> TimeUnit -> FilePath -> IO [Document]
tsvToDocs parser patterns time path =
  case parser of
    Wos  _     -> errorTrace "tsvToDocs: unimplemented"
    Tsv  limit -> Vector.toList
      <$> Vector.take limit
      <$> Vector.map (\row -> Document (toPhyloDate  (Tsv.fromMIntOrDec Tsv.defaultYear $ tsv_publication_year row) (fromMaybe Tsv.defaultMonth $ tsv_publication_month row) (fromMaybe Tsv.defaultDay $ tsv_publication_day row) time)
                                       (toPhyloDate' (Tsv.fromMIntOrDec Tsv.defaultYear $ tsv_publication_year row) (fromMaybe Tsv.defaultMonth $ tsv_publication_month row) (fromMaybe Tsv.defaultDay $ tsv_publication_day row) time)
                                       (termsInText patterns $ (tsv_title row) <> " " <> (tsv_abstract row))
                                       Nothing
                                       []
                                       time
                     ) <$> snd <$> either (\err -> panicTrace $ "TSV error" <> (show err)) identity <$> Tsv.readTSVFile path
    Tsv' limit -> Vector.toList
      <$> Vector.take limit
      <$> Vector.map (\row -> Document (toPhyloDate  (tsv'_publication_year row) (tsv'_publication_month row) (tsv'_publication_day row) time)
                                       (toPhyloDate' (tsv'_publication_year row) (tsv'_publication_month row) (tsv'_publication_day row) time)
                                       (termsInText patterns $ (tsv'_title row) <> " " <> (tsv'_abstract row))
                                       (Just $ tsv'_weight row)
                                       (map (T.strip . pack) $ splitOn ";" (unpack $ (tsv'_source row)))
                                       time
                     ) <$> snd <$> Tsv.readWeightedTsv path
    Csv _  -> panicTrace "CSV is currently not supported."
    Csv' _ -> panicTrace "CSV is currently not supported."


-- To parse a file into a list of Document
fileToDocsAdvanced :: CorpusParser -> FilePath -> TimeUnit -> TermList -> IO [Document]
fileToDocsAdvanced parser path time lst = do
  let patterns = buildPatterns lst
  case parser of
      Wos limit  -> wosToDocs limit  patterns time path
      Tsv  _     -> tsvToDocs parser patterns time path
      Tsv' _     -> tsvToDocs parser patterns time path
      Csv  _     -> panicTrace "CSV is currently not supported."
      Csv' _     -> panicTrace "CSV is currently not supported."

fileToDocsDefault :: CorpusParser -> FilePath -> [TimeUnit] -> TermList -> IO [Document]
fileToDocsDefault parser path timeUnits lst = 
  if length timeUnits > 0
    then
      do 
        let timeUnit = (head' "fileToDocsDefault" timeUnits)
        docs <- fileToDocsAdvanced parser path timeUnit lst  
        let periods = toPeriods (sort $ nub $ map date docs) (getTimePeriod timeUnit) (getTimeStep timeUnit)
        if (length periods < 3)
         then fileToDocsDefault parser path (tail timeUnits) lst
         else pure docs
    else panicTrace "this corpus is incompatible with the phylomemy reconstruction"

-- on passe à passer la time unit dans la conf envoyé au phyloMaker
-- dans le phyloMaker si default est true alors dans le setDefault ou pense à utiliser la TimeUnit de la conf 


readListV4 :: [Char] -> IO NgramsList
readListV4 path = do
  listJson <- (eitherDecode <$> readJson path) :: IO (Either Prelude.String NgramsList)
  case listJson of
    Left err -> do
      putStrLn err
      errorTrace "readListV4 unimplemented"
    Right listV4 -> pure listV4


fileToList  :: ListParser -> FilePath -> IO TermList
fileToList parser path =
  case parser of
    V3 -> tsvMapTermList path
    V4 -> fromJust
      <$> toTermList MapTerm NgramsTerms
      <$> readListV4 path


---------------
-- | Label | --
---------------


-- Config time parameters to label
timeToLabel :: PhyloConfig -> [Char]
timeToLabel config = case (timeUnit config) of
      Epoch p s f -> ("time_epochs" <> "_" <> (show p) <> "_" <> (show s) <> "_" <> (show f))
      Year  p s f -> ("time_years"  <> "_" <> (show p) <> "_" <> (show s) <> "_" <> (show f))
      Month p s f -> ("time_months" <> "_" <> (show p) <> "_" <> (show s) <> "_" <> (show f))
      Week  p s f -> ("time_weeks"  <> "_" <> (show p) <> "_" <> (show s) <> "_" <> (show f))
      Day   p s f -> ("time_days"   <> "_" <> (show p) <> "_" <> (show s) <> "_" <> (show f))


seaToLabel :: PhyloConfig -> [Char]
seaToLabel config = case (seaElevation config) of
      Constante start step   -> ("sea_cst_"  <> (show start) <> "_" <> (show step))
      Adaptative granularity -> ("sea_adapt" <> (show granularity))
      Evolving _ -> ("sea_evolv")


sensToLabel :: PhyloConfig -> [Char]
sensToLabel config = case (similarity config) of
      Hamming _ _ -> errorTrace "sensToLabel: unimplemented"
      WeightedLogJaccard s _ -> ("WeightedLogJaccard_"  <> show s)
      WeightedLogSim s _ -> ( "WeightedLogSim-sens_"  <> show s)


cliqueToLabel :: PhyloConfig -> [Char]
cliqueToLabel config = case (clique config) of
      Fis s s' -> "fis_" <> (show s) <> "_" <> (show s')
      MaxClique s t f ->  "clique_" <> (show s)<> "_"  <> (show f)<> "_"  <> (show t)


syncToLabel :: PhyloConfig -> [Char]
syncToLabel config = case (phyloSynchrony config) of
      ByProximityThreshold scl sync_sens scope _ -> ("scale_" <> (show scope) <> "_" <> (show sync_sens)  <> "_"  <> (show scl))
      ByProximityDistribution _ _ -> "syncToLabel: unimplemented"

qualToConfig :: PhyloConfig -> [Char]
qualToConfig config = case (phyloQuality config) of
      Quality g m -> "quality_" <> (show g) <> "_" <> (show m)


-- To set up the export file's label from the configuration
configToLabel :: PhyloConfig -> [Char]
configToLabel config = outputPath config
                    <> (unpack $ phyloName config)
                    <> "-" <> (timeToLabel config)
                    <> "-scale_" <> (show (phyloScale config))
                    <> "-" <> (seaToLabel config)
                    <> "-" <> (sensToLabel config)
                    <> "-" <> (cliqueToLabel config)
                    <> "-level_" <> (show (_qua_granularity $ phyloQuality config))
                    <> "-" <> (syncToLabel config)
                    <> ".dot"


-- To write a sha256 from a set of config's parameters
configToSha :: Backup -> PhyloConfig -> [Char]
configToSha stage config = unpack
                         $ replace "/" "-"
                         $ T.pack (show (hash $ C8.pack label))
  where
    label :: [Char]
    label = case stage of
      BackupPhyloWithoutLink -> (corpusPath    config)
                       <> (listPath      config)
                       <> (timeToLabel   config)
                       <> (cliqueToLabel config)
      BackupPhylo   -> (corpusPath    config)
                       <> (listPath      config)
                       <> (timeToLabel   config)
                       <> (cliqueToLabel config)
                       <> (sensToLabel   config)
                       <> (seaToLabel    config)
                       <> (syncToLabel   config)
                       <> (qualToConfig  config)
                       <> (show (phyloScale config))

