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Commit 3d90bcc8 authored by Alfredo Di Napoli's avatar Alfredo Di Napoli
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Add Nadal canned Phylo corpus for testing

parent 1bff83b6
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          gargantext.cabal
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          ......@@ -37,6 +37,9 @@ data-files:
          test-data/ngrams/simple.csv
          test-data/phylo/bpa_phylo_test.json
          test-data/phylo/cleopatre.golden.json
          test-data/phylo/nadal.golden.json
          test-data/phylo/nadal_docslist.golden.json
          test-data/phylo/nadal_ngramslist.golden.json
          test-data/phylo/issue-290-small.golden.json
          test-data/phylo/open_science.json
          test-data/phylo/small-phylo.golden.json
          ......
          test-data/phylo/nadal.golden.json 0 → 100644
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          test-data/phylo/nadal_docslist.golden.csv 0 → 100644
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          test-data/phylo/nadal_ngramslist.golden.csv 0 → 100644
          View file @ 3d90bcc8
          status label forms
          candidate ability
          map abstentionists
          candidate access
          candidate account
          map accuracy
          candidate ace
          candidate aci
          candidate acquisition
          candidate activity
          map adaptive thresholds
          candidate addition
          map additive output noise
          map additive utility
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          stop agent
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          stop agents agent
          map aggregated dynamics
          candidate aid
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          map algorithme
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          map analogies
          candidate analyse
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          candidate analytical results
          map animal
          map animals animal
          map anisotropic
          map anisotropy
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          stop application applications
          stop applications
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          stop approaches approach
          candidate april
          map architecture
          candidate article
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          map attractiveness
          map attractor network dynamics
          map attractor neural network
          map attractor neural networks attractor neural network
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          map available experimental and theoretical techniques
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          map average opinion
          map axelrod
          candidate background
          map backpropagation
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          map bandwagon properties
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          map behaviors behavior
          candidate behaviour
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          map benevolentbased organizations
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          map binary strings
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          map body
          map boundaries boundary|&|bounds
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          map bounds
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          map brain injury‬
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          candidate calculation
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          stop case cases
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          map cerebellum
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          candidate clusters
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          map community size
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          map diffusion
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          map directed animals directed compact animals
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          map dynamics of neural networks
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          candidate ecole polytechnique
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          map externalities‬
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          stop first time
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          map french ministry
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          candidate french students
          candidate function
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          map fuzzy neural networks
          map game theory
          map gene
          stop general framework
          candidate generalisation
          map generic properties
          map genes
          map geophysical community
          map geophysical data
          map geophysical time series analysis
          map global trend
          candidate goal
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          map goods
          map gradient descent
          map grammatical status
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          candidate guarantee
          map handwritten character classification
          candidate help
          candidate henri poincaré institute
          map herschkowitz
          map heterogeneities
          map heterogeneity heterogeneous|&|heterogenous
          map heterogeneous
          map heterogeneous agents
          map heterogeneous media
          map heterogenous
          map hidden units
          map hierarchical neural network
          map hierarchical neural networks‬
          candidate high price
          candidate high thresholds
          map honesty
          map hopfield model
          map hot spots
          map housing
          map human machine interaction
          map human confidence
          map human vision
          map humanities
          candidate humans
          map hybrid neural trees
          map hybrid trees
          candidate hypothesis
          map hypothèse linéaire
          map hysteretic effects
          map ica
          map ica algorithm
          candidate idea
          stop identification identifications
          stop identifications
          map idiosyncratic component
          map idiosyncratic preferences
          map idiosyncratic willingness idiosyncratic willingnesses
          map idiosyncratic willingnesses
          map illegal activities
          candidate image
          map image coding
          map image representation
          map images
          stop importance
          map important open issues
          map impunity
          map income
          map incomplete confounding factors
          map independent component analysis
          map independent components
          map independent sources
          map individual behavior
          map individual decisions
          map individual dynamics
          map individual preferences
          map individuals
          map inequality
          map infants
          candidate information
          map information capacity
          map information processing
          map information storage
          map information storage capacity
          map information theoretic approach
          map information theory
          map information transfer
          map information transmission
          candidate input
          candidate input data
          map input layer
          map input noise
          map input space
          candidate input units
          candidate inputs
          candidate insight insights
          candidate insights
          stop integration
          map intelligence
          map intelligent battery
          map interacting individuals
          candidate interaction
          map interaction network
          map interaction structures
          candidate interactions
          map interconnected global society
          map interdisciplinary approach
          map interdisciplinary team
          map interface
          map international epidemics
          candidate international symposia
          map interpretation
          stop introduction
          map invasion percolation
          map invertible transfer functions
          map ion channels
          map ising model ising problem
          map ising problem
          candidate issues
          candidate j nadal
          candidate january
          candidate joint cognitive science phd program
          candidate journal
          candidate jp nadal
          candidate junior researchers
          map k means
          map k means algorithm
          candidate kind
          candidate kirman
          candidate knowledge
          candidate l
          map language
          map language change
          candidate languages
          candidate large fraction
          candidate large n limit
          candidate large number
          map large systems
          map lattice
          candidate law
          map law enforcement
          candidate layer
          map layered networks‬
          map layered neural network
          map learning
          map learning algorithm learning algorithms|&|learning process|&|learning rule
          map learning algorithms
          map learning process learning processes
          map learning processes
          map learning rule
          candidate lecture
          candidate level
          map lexicon
          map life
          candidate light
          candidate limit limits
          candidate limited number
          candidate limits
          candidate linear hypothesis
          map linear mixture
          map linear noisy network
          map linguistic
          map linguistic change
          candidate link
          candidate links
          candidate linsker
          candidate literature
          map lives life
          map local and global properties
          map local behavior
          map local dynamics
          map localised externalities
          map low price
          candidate low thresholds
          candidate lyon
          map machine learning
          map magnetic field
          stop main result
          stop main results
          stop major advantages
          map mammals
          map management
          map manifesto
          candidate many experimental and theoretical studies
          candidate many other works
          candidate many socioeconomic phenomena
          map market
          map market mechanisms
          map market model
          map market organisation
          map market organization
          map markets
          map master equations
          candidate mathematical description
          map mathematicians
          map mathematics mathematicians
          candidate maximal capacity
          stop maximal number
          candidate maximization
          map maximum entropy principle
          map maximum information
          candidate mcfadden
          map mean field approximation
          candidate mechanism mechanisms
          candidate mechanisms
          candidate members
          map memories
          map memory memories
          stop method
          map methodological foundations
          stop methods method
          map microarray
          map microarrays
          candidate mixing
          map mixing‬
          map mixture
          candidate model
          stop modeling
          candidate models model
          candidate models interactions
          candidate modifications
          stop modélisation des
          map monkeys
          map monopolist
          map monopoly case
          map monopoly market
          map motley crowd
          map motor outputs
          candidate movements
          stop much information
          stop much research effort
          map multi agent simulation
          map multiagent approach
          map multiagent simulation
          map multiclass classification
          map multifractal
          map multifractal signals
          map multimodal sensors
          map multiple equilibria
          map multivariate time series
          map municipalities
          map mutual influences
          map mutual information
          candidate n
          candidate nadal
          map nash equilibria
          map national elections
          map natural images
          stop nature
          candidate need
          candidate neighborhood
          map neighbourhood
          map neocortex
          map network
          map network externality
          map networks network
          map neural codes
          map neural coding
          map neural decision making process
          map neural decision process
          map neural information processing
          map neural net
          map neural network neural net|&|neural networks|&|neural networks‬
          map neural networks
          map neural networks‬
          map neural tree
          map neural trees neural tree
          map neurobiology
          map neuron
          map neuronal dynamics
          map neurones
          map neurones formels
          map neurons neuron|&|neurones
          map neurons spiking
          map neuroscience
          map neuroscience phd program
          candidate new algorithm
          candidate new avenues
          candidate new discipline
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          map noise noisy
          map noisy
          map noisy conditions
          map noisy environment
          map nonlinear analogue channel
          map nonlinear neural network nonlinear neurons
          map nonlinear neurons
          map nonlinearities
          map norm
          candidate notion
          candidate number
          map numerical simulations
          candidate numerical study
          candidate numerical tests
          map obesity
          candidate objective
          candidate objectives
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          map onelayer feedforward neural network
          stop ones
          map opinion
          map opinion dynamics
          map opinions opinion
          map opper
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          map optimal information storage
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          candidate output distribution
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          map paris
          candidate parisian science universities
          map part
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          stop particular emphasis
          map pattern storage
          map patterns
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          map perceptron
          map perceptron architecture
          map perceptrons perceptron
          map perceptual decision
          map perceptual decisions‬
          map perceptual tasks
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          candidate performances
          map perishable good
          map perturbation theory
          map perturbations
          map phase diagram
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          map phase transition phase transitions
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          map physicists
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          candidate previous results
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          map price
          map price distribution
          map price system
          map prices
          map prices adjustments
          map pricing
          map pricing strategies
          candidate principal component analysis
          candidate probability
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          stop problem
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          candidate procedure
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          map profit
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          candidate properties
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          map punishment
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          candidate q
          map q different states
          map quantitative understanding
          candidate question
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          map rioters
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          stop same solution
          stop same time period
          candidate satisfactory account
          candidate scale
          map scale invariant
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          candidate schemes
          map science sciences
          map sciences
          map sciences sociales‬
          map sciences économiques
          map segmentation
          map segmentation analysis
          map segregation
          map selection
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          map self coupling‬
          map self organised self organized states
          map self organized states
          map self similar
          map self similarity self similar|&|selfsimilarity properties
          map self avoiding walks self avoiding walk
          map selfsimilarity properties
          map seller
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          map several opinion clusters
          map short term memories
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          map simple market model
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          map simple neural network
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          map socio spatial segregation
          map sociology
          candidate sole description
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          map suburb
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          candidate supervised and unsupervised learning tasks
          map supervised clustering
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          map symbolic data analysis
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          map synaptic weights
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          map système dynamique
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          stop techniques classiques cherchent uniquement
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          map textured images
          candidate theoretical analysis
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          map turbulent flows‬
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          map unbiased patterns
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          candidate unprecedented volumes
          map unsupervised learning
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          map urban citizen
          map urban housing
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          map victimisation effects
          map view
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          map vowels
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          map wavelet basis
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          map wealth distribution
          map wetting fluid
          candidate whole series
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          map willingness to pay
          map willshaw model
          candidate words
          candidate work works
          map working memories
          candidate works
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          map yeast
          test/Test/Offline/Phylo.hs
          View file @ 3d90bcc8
          ......@@ -58,6 +58,7 @@ tests = testGroup "Phylo" [
          , testGroup "toPhyloWithoutLink" [
          testCase "returns expected data" testSmallPhyloWithoutLinkExpectedOutput
          , testCase "phyloCleopatre returns expected data" testCleopatreWithoutLinkExpectedOutput
          , testCase "Nadal canned corpus returns expected data" testNadalWithoutLinkExpectedOutput
          ]
          , testGroup "phylo2dot2json" [
          testCase "is deterministic" testPhylo2dot2json
          ......@@ -76,6 +77,23 @@ testCleopatreWithoutLinkExpectedOutput = do
          expected <- readPhylo =<< getDataFileName "test-data/phylo/cleopatre.golden.json"
          assertBool (show $ ansiWlEditExprCompact $ ediff expected actual) (expected == actual)
          testNadalWithoutLinkExpectedOutput :: Assertion
          testNadalWithoutLinkExpectedOutput = do
          corpusPath' <- getDataFileName "test-data/phylo/nadal_docslist.golden.csv"
          listPath' <- getDataFileName "test-data/phylo/nadal_ngramslist.golden.csv"
          let config = phyloTestConfig { corpusPath = corpusPath'
          , listPath = listPath'
          , listParser = V3
          }
          mapList <- fileToList (listParser config) (listPath config)
          corpus <- fileToDocsDefault (corpusParser config)
          (corpusPath config)
          [Year 3 1 5,Month 3 1 5,Week 4 2 5]
          mapList
          let actual = setConfig phyloTestConfig $ toPhyloWithoutLink corpus config
          expected <- setConfig phyloTestConfig <$> (readPhylo =<< getDataFileName "test-data/phylo/nadal.golden.json")
          assertBool (show $ ansiWlEditExprCompact $ ediff expected actual) (expected == actual)
          testSmallPhyloWithoutLinkExpectedOutput :: Assertion
          testSmallPhyloWithoutLinkExpectedOutput = do
          bpaConfig <- getDataFileName "bench-data/phylo/bpa-config.json"
          ......@@ -91,7 +109,7 @@ testSmallPhyloWithoutLinkExpectedOutput = do
          mapList
          let actual = setConfig phyloTestConfig $ toPhyloWithoutLink corpus config
          expected <- setConfig phyloTestConfig <$> (readPhylo =<< getDataFileName "test-data/phylo/small-phylo.golden.json")
          assertBool (show $ ansiWlEditExpr $ ediff expected actual) (expected == actual)
          assertBool (show $ ansiWlEditExprCompact $ ediff expected actual) (expected == actual)
          testPhylo2dot2json :: Assertion
          testPhylo2dot2json = do
          ......@@ -103,7 +121,7 @@ testPhylo2dot2json = do
          case actual_e of
          Left err -> fail err
          Right (actual :: GraphData) -> do
          assertBool ("Phylo mismatch!" <> show (ansiWlEditExpr $ ediff expected actual)) (expected `compareGraphDataFuzzy` actual)
          assertBool ("Phylo mismatch!" <> show (ansiWlEditExprCompact $ ediff expected actual)) (expected `compareGraphDataFuzzy` actual)
          compareGraphDataFuzzy :: GraphData -> GraphData -> Bool
          compareGraphDataFuzzy gd1 gd2 =
          ......
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