[FIX] Order 1 and Order 2, node size ok.

src/Gargantext/Core/Methods/Graph/MaxClique.hs

@@ -71,6 +71,7 @@ type Neighbor = Node
 
 -- | getMaxCliques
 -- TODO chose distance order
+
 getMaxCliques :: Ord a => CliqueFilter -> Distance -> Threshold -> Map (a, a) Int -> [[a]]
 getMaxCliques f d t m = map fromIndices $ getMaxCliques' t m'
   where

src/Gargantext/Core/Viz/Graph/API.hs

@@ -9,7 +9,6 @@ Portability : POSIX
 
 -}
 
-
 {-# LANGUAGE OverloadedLists   #-}   -- allows to write Map and HashMap as lists
 {-# LANGUAGE TypeOperators     #-}
 
@@ -159,13 +158,6 @@ recomputeGraph _uId nId maybeDistance = do
                        pure $ trace "[G.V.G.API] Graph exists, recomputing" graph'''
 
 
--- TODO use Database Monad only here ?
---computeGraph :: HasNodeError err
---             => CorpusId
---             -> Distance
---             -> NgramsType
---             -> NodeListStory
---             -> Cmd err Graph
 computeGraph :: FlowCmdM env err m
              => CorpusId
              -> Distance
@@ -180,7 +172,9 @@ computeGraph cId d nt repo = do
           $ mapTermListRoot [lId] nt repo
 
   myCooc <- HashMap.filter (>1) -- Removing the hapax (ngrams with 1 cooc)
-         <$> getCoocByNgrams (if d == Conditional then Diagonal True else Diagonal False)
+         -- <$> HashMap.filterWithKey (\(x,y) _ -> x /= y)
+         -- <$> getCoocByNgrams (if d == Conditional then Diagonal True else Diagonal False)
+         <$> getCoocByNgrams (Diagonal True)
          <$> groupNodesByNgrams ngs
          <$> getNodesByNgramsOnlyUser cId (lIds <> [lId]) nt (HashMap.keys ngs)
 
@@ -220,7 +214,6 @@ defaultGraphMetadata cId t repo gm = do
     }
                          -- (map (\n -> LegendField n "#FFFFFF" (pack $ show n)) [1..10])
 
-
 ------------------------------------------------------------
 type GraphAsyncAPI = Summary "Recompute graph"
                      :> "recompute"
@@ -339,8 +332,3 @@ getGraphGexf uId nId = do
   HyperdataGraphAPI { _hyperdataAPIGraph = graph } <- getGraph uId nId
   pure $ addHeader "attachment; filename=graph.gexf" graph
 
-
-
-
-
-

src/Gargantext/Core/Viz/Graph/Index.hs

@@ -28,7 +28,7 @@ import qualified Data.Array.Accelerate as A
 import qualified Data.Array.Accelerate.Interpreter as A
 import Data.Array.Accelerate (Matrix, Elt, Shape, (:.)(..), Z(..))
 
-import Data.Maybe (fromMaybe)
+import Data.Maybe (fromMaybe, catMaybes)
 
 import Data.Set (Set)
 import qualified Data.Set as S
@@ -69,7 +69,7 @@ map2mat sym def n m = A.fromFunction shape getData
       case sym of
         Triangle -> fromMaybe def (M.lookup (x,y) m)
         Square   -> fromMaybe (fromMaybe def $ M.lookup (y,x) m)
-                                             $ M.lookup (x, y) m
+                                             $ M.lookup (x,y) m
                                              )
     shape   = (Z :. n :. n)
 
@@ -93,8 +93,11 @@ fromIndex ni ns = indexConversion ni ns
 
 indexConversion :: (Ord b, Ord k) => Map k b -> Map (k,k) a -> Map (b, b) a
 indexConversion index ms = M.fromList
-                         $ map (\((k1,k2),c) -> ( ((M.!) index k1, (M.!) index k2), c))
-                               (M.toList ms)
+                         $ catMaybes
+                         $ map (\((k1,k2),c) -> ((,) <$> ((,) <$> M.lookup k1 index <*> M.lookup k2 index)
+                                                      <*> Just c)
+                                )
+                         $ M.toList ms
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