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haskell-gargantext
haskell-gargantext
Commit 69fa22f7 authored by Alfredo Di Napoli's avatar Alfredo Di Napoli
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Add Phylo golden tests

parent e1418b58
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          gargantext.cabal
          View file @ 69fa22f7
          ......@@ -26,6 +26,8 @@ data-files:
          ekg-assets/chart_line_add.png
          ekg-assets/cross.png
          test-data/ngrams/GarganText_NgramsTerms-QuantumComputing.json
          test-data/phylo/bpa_phylo_test.json
          test-data/phylo/open_science.json
          library
          exposed-modules:
          ......
          package.yaml
          View file @ 69fa22f7
          ......@@ -45,6 +45,8 @@ data-files:
          - ekg-assets/chart_line_add.png
          - ekg-assets/cross.png
          - test-data/ngrams/GarganText_NgramsTerms-QuantumComputing.json
          - test-data/phylo/bpa_phylo_test.json
          - test-data/phylo/open_science.json
          library:
          source-dirs: src
          ghc-options:
          ......
          src-test/Offline/JSON.hs
          View file @ 69fa22f7
          ......@@ -16,8 +16,11 @@ import Test.Tasty
          import Test.Tasty.HUnit
          import Test.Tasty.QuickCheck
          import Text.RawString.QQ
          import qualified Data.ByteString as B
          import qualified Data.ByteString.Lazy.Char8 as C8
          import Paths_gargantext
          jsonRoundtrip :: (Show a, FromJSON a, ToJSON a, Eq a) => a -> Property
          jsonRoundtrip a =
          counterexample ("Parsed JSON: " <> C8.unpack (encode a)) $ eitherDecode (encode a) === Right a
          ......@@ -33,6 +36,9 @@ tests = testGroup "JSON" [
          , testProperty "GraphDataData" (jsonRoundtrip @GraphDataData)
          , testProperty "ObjectData" (jsonRoundtrip @ObjectData)
          , testProperty "PhyloData" (jsonRoundtrip @PhyloData)
          , testProperty "LayerData" (jsonRoundtrip @LayerData)
          , testCase "can parse bpa_phylo_test.json" testParseBpaPhylo
          , testCase "can parse open_science.json" testOpenSciencePhylo
          ]
          ]
          ......@@ -46,3 +52,19 @@ testWithQueryFrontend = do
          -- instances, this test would fail, and we will be notified.
          cannedWithQueryPayload :: String
          cannedWithQueryPayload = [r| {"query":"Haskell","node_id":138,"lang":"EN","flowListWith":{"type":"MyListsFirst"},"datafield":"External Arxiv","databases":"Arxiv"} |]
          testParseBpaPhylo :: Assertion
          testParseBpaPhylo = do
          pth <- getDataFileName "test-data/phylo/bpa_phylo_test.json"
          jsonBlob <- B.readFile pth
          case eitherDecodeStrict' @GraphData jsonBlob of
          Left err -> error err
          Right _ -> pure ()
          testOpenSciencePhylo :: Assertion
          testOpenSciencePhylo = do
          pth <- getDataFileName "test-data/phylo/open_science.json"
          jsonBlob <- B.readFile pth
          case eitherDecodeStrict' @PhyloData jsonBlob of
          Left err -> error err
          Right _ -> pure ()
          src/Gargantext/Core/Types/Phylo.hs
          View file @ 69fa22f7
          ......@@ -33,6 +33,7 @@ import Control.Applicative ((<|>))
          import Data.Aeson
          import Data.Aeson.Types
          import Data.Aeson.TH (deriveJSON)
          import Data.Maybe
          import Data.Monoid
          import Data.Swagger
          import Data.Text (Text)
          ......@@ -395,7 +396,7 @@ instance ToJSON LayerData where
          instance FromJSON LayerData where
          parseJSON = withObject "LayerData" $ \o -> do
          _ld_nodes <- o .: "nodes"
          _ld_nodes <- fromMaybe mempty <$> (o .:? "nodes")
          pure $ LayerData{..}
          data NodeCommonData =
          ......@@ -447,6 +448,7 @@ data EdgeData
          = GroupToAncestor !GvId !EdgeCommonData !GroupToAncestorData
          | GroupToGroup !GvId !EdgeCommonData !GroupToGroupData
          | BranchToGroup !GvId !EdgeCommonData !BranchToGroupData
          | PeriodToPeriod !GvId !EdgeCommonData
          deriving (Show, Eq, Generic)
          data GroupToAncestorData
          ......@@ -516,13 +518,15 @@ instance FromJSON GvId where
          instance ToJSON EdgeData where
          toJSON = \case
          GroupToAncestor gvid commonData edgeTypeData
          -> mkEdge "ancestorLink" gvid commonData edgeTypeData
          -> mkEdge (Just "ancestorLink") gvid commonData edgeTypeData
          GroupToGroup gvid commonData edgeTypeData
          -> mkEdge "link" gvid commonData edgeTypeData
          -> mkEdge (Just "link") gvid commonData edgeTypeData
          BranchToGroup gvid commonData edgeTypeData
          -> mkEdge "branchLink" gvid commonData edgeTypeData
          -> mkEdge (Just "branchLink") gvid commonData edgeTypeData
          PeriodToPeriod gvid commonData
          -> mkEdge Nothing gvid commonData (Object mempty)
          mkEdge :: ToJSON a => Text -> GvId -> EdgeCommonData -> a -> Value
          mkEdge :: ToJSON a => Maybe Text -> GvId -> EdgeCommonData -> a -> Value
          mkEdge edgeType gvid commonData edgeTypeData =
          let commonDataJSON = toJSON commonData
          edgeTypeDataJSON = toJSON edgeTypeData
          ......@@ -537,18 +541,19 @@ mkEdge edgeType gvid commonData edgeTypeData =
          instance FromJSON EdgeData where
          parseJSON = withObject "EdgeData" $ \o -> do
          edgeType <- o .: "edgeType"
          edgeType <- o .:? "edgeType"
          gvid <- o .: "_gvid"
          _ed_color <- o .: "color"
          _ed_head <- o .: "head"
          _ed_pos <- o .: "pos"
          _ed_tail <- o .: "tail"
          _ed_width <- o .: "width"
          case (edgeType :: Text) of
          "ancestorLink" -> GroupToAncestor <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          "link" -> GroupToGroup <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          "branchLink" -> BranchToGroup <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          _ -> fail $ "EdgeData: unrecognised edgeType for Phylo graph: " <> T.unpack edgeType
          case (edgeType :: Maybe Text) of
          Just "ancestorLink" -> GroupToAncestor <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          Just "link" -> GroupToGroup <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          Just "branchLink" -> BranchToGroup <$> pure gvid <*> pure EdgeCommonData{..} <*> parseJSON (Object o)
          Just unknownEdgeType -> fail $ "EdgeData: unrecognised edgeType for Phylo graph: " <> T.unpack unknownEdgeType
          Nothing -> pure $ PeriodToPeriod gvid EdgeCommonData{..}
          instance ToJSON EdgeCommonData where
          toJSON EdgeCommonData{..} = object
          ......
          test-data/phylo/bpa_phylo_test.json 0 → 100644
          View file @ 69fa22f7
          This source diff could not be displayed because it is too large. You can view the blob instead.
          test-data/phylo/open_science.json 0 → 100644
          View file @ 69fa22f7
          {
          "pd_data": {
          "phyloSources": "[]",
          "directed": true,
          "phyloTimeScale": "year",
          "color": "white",
          "strict": false,
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "objects": [
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Branches peaks",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 0,
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20002002",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 1,
          "nodes": [
          23
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20012003",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 2,
          "nodes": [
          24
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20022004",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 3,
          "nodes": [
          25
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20032005",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 4,
          "nodes": [
          26
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20042006",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 5,
          "nodes": [
          27
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20052007",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 6,
          "nodes": [
          28
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20062008",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 7,
          "nodes": [
          29
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20072009",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 8,
          "nodes": [
          30
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20082010",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 9,
          "nodes": [
          31
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20092011",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 10,
          "nodes": [
          32
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
          "fontsize": "30",
          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20102012",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 11,
          "nodes": [
          33
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
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          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
          "phyloBranches": "0",
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
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          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20112013",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 12,
          "nodes": [
          34
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
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          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
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          "phyloSeaRiseSteps": "0.1"
          },
          {
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          "phyloTimeScale": "year",
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          "phyloGroups": "0",
          "labelloc": "t",
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          "phyloTerms": "0",
          "name": "Period20122014",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 13,
          "nodes": [
          35
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
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          "phyloPeriods": "22",
          "ranksep": "1",
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          "phyloSeaRiseSteps": "0.1"
          },
          {
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          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
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          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20132015",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 14,
          "nodes": [
          36
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
          "splines": "spline",
          "nodesep": "1",
          "phyloDocs": "313.0",
          "phyloPeriods": "22",
          "ranksep": "1",
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          "phyloSeaRiseSteps": "0.1"
          },
          {
          "phyloSources": "[]",
          "phyloTimeScale": "year",
          "color": "white",
          "lheight": "0.46",
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          "phyloGroups": "0",
          "labelloc": "t",
          "ratio": "fill",
          "phyloTerms": "0",
          "name": "Period20142016",
          "lwidth": "2.51",
          "PhyloScale": "0.2",
          "phyloFoundations": "346",
          "_gvid": 15,
          "nodes": [
          37
          ],
          "label": "Phylo Name",
          "rank": "same",
          "lp": "142,2918.5",
          "style": "filled",
          "phyloQuality": "0.2253686608796909",
          "bb": "0,0,284,2939",
          "overlap": "scale",
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          ],
          "phyloSeaRiseStart": "0.1",
          "phyloSeaRiseSteps": "0.1"
          },
          "pd_listId": 185785,
          "pd_corpusId": 185783
          }
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