Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
haskell-gargantext
Project
Project
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
195
Issues
195
List
Board
Labels
Milestones
Merge Requests
12
Merge Requests
12
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
gargantext
haskell-gargantext
Commits
7bc490a3
Commit
7bc490a3
authored
May 20, 2020
by
Alexandre Delanoë
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
[CLEAN] Gexf instance in separate file.
parent
cb654969
Changes
2
Show whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
88 additions
and
58 deletions
+88
-58
API.hs
src/Gargantext/Viz/Graph/API.hs
+14
-58
GEXF.hs
src/Gargantext/Viz/Graph/GEXF.hs
+74
-0
No files found.
src/Gargantext/Viz/Graph/API.hs
View file @
7bc490a3
{-|
{-|
Module : Gargantext.Viz.
Phylo.Tools
Module : Gargantext.Viz.
Graph
Description :
Phylomemy Tools to build/manage it
Description :
Copyright : (c) CNRS, 2017-Present
Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3
License : AGPL + CECILL v3
Maintainer : team@gargantext.org
Maintainer : team@gargantext.org
...
@@ -28,17 +28,14 @@ module Gargantext.Viz.Graph.API
...
@@ -28,17 +28,14 @@ module Gargantext.Viz.Graph.API
import
Control.Lens
(
set
,
(
^.
),
_Just
,
(
^?
))
import
Control.Lens
(
set
,
(
^.
),
_Just
,
(
^?
))
import
Data.Aeson
import
Data.Aeson
import
Debug.Trace
(
trace
)
import
Debug.Trace
(
trace
)
import
qualified
Data.HashMap.Lazy
as
HashMap
import
qualified
Data.Map
as
Map
import
qualified
Data.Map
as
Map
import
Data.Maybe
(
Maybe
(
..
))
import
Data.Maybe
(
Maybe
(
..
))
import
Data.Swagger
import
Data.Swagger
import
Data.Text
import
Data.Text
import
GHC.Generics
(
Generic
)
import
GHC.Generics
(
Generic
)
import
Servant
import
Servant
import
Servant.Job.Async
import
Servant.XML
import
Servant.XML
import
qualified
Xmlbf
as
Xmlbf
import
Servant.Job.Async
import
Gargantext.API.Ngrams
(
NgramsRepo
,
r_version
)
import
Gargantext.API.Ngrams
(
NgramsRepo
,
r_version
)
import
Gargantext.API.Ngrams.Tools
import
Gargantext.API.Ngrams.Tools
import
Gargantext.API.Admin.Orchestrator.Types
import
Gargantext.API.Admin.Orchestrator.Types
...
@@ -56,54 +53,11 @@ import Gargantext.Database.Admin.Types.Node
...
@@ -56,54 +53,11 @@ import Gargantext.Database.Admin.Types.Node
import
Gargantext.Database.Query.Table.Node.UpdateOpaleye
(
updateHyperdata
)
import
Gargantext.Database.Query.Table.Node.UpdateOpaleye
(
updateHyperdata
)
import
Gargantext.Database.Prelude
(
Cmd
)
import
Gargantext.Database.Prelude
(
Cmd
)
import
Gargantext.Prelude
import
Gargantext.Prelude
import
qualified
Gargantext.Prelude
as
P
import
Gargantext.Viz.Graph
import
Gargantext.Viz.Graph
import
qualified
Gargantext.Viz.Graph
as
G
import
Gargantext.Viz.Graph.Tools
-- (cooc2graph)
import
Gargantext.Viz.Graph.Tools
-- (cooc2graph)
import
Gargantext.Viz.Graph.GEXF
()
-- Converts to GEXF format
-- See https://gephi.org/gexf/format/
instance
Xmlbf
.
ToXml
Graph
where
toXml
(
Graph
{
_graph_nodes
=
graphNodes
,
_graph_edges
=
graphEdges
})
=
root
graphNodes
graphEdges
where
root
::
[
G
.
Node
]
->
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
root
gn
ge
=
Xmlbf
.
element
"gexf"
params
$
meta
<>
(
graph
gn
ge
)
where
params
=
HashMap
.
fromList
[
(
"xmlns"
,
"http://www.gexf.net/1.2draft"
)
,
(
"version"
,
"1.2"
)
]
meta
=
Xmlbf
.
element
"meta"
params
$
creator
<>
desc
where
params
=
HashMap
.
fromList
[
(
"lastmodifieddate"
,
"2020-03-13"
)
]
creator
=
Xmlbf
.
element
"creator"
HashMap
.
empty
$
Xmlbf
.
text
"Gargantext.org"
desc
=
Xmlbf
.
element
"description"
HashMap
.
empty
$
Xmlbf
.
text
"Gargantext gexf file"
graph
::
[
G
.
Node
]
->
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
graph
gn
ge
=
Xmlbf
.
element
"graph"
params
$
(
nodes
gn
)
<>
(
edges
ge
)
where
params
=
HashMap
.
fromList
[
(
"mode"
,
"static"
)
,
(
"defaultedgetype"
,
"directed"
)
]
nodes
::
[
G
.
Node
]
->
[
Xmlbf
.
Node
]
nodes
gn
=
Xmlbf
.
element
"nodes"
HashMap
.
empty
$
P
.
concatMap
node'
gn
node'
::
G
.
Node
->
[
Xmlbf
.
Node
]
node'
(
G
.
Node
{
node_id
=
nId
,
node_label
=
l
})
=
Xmlbf
.
element
"node"
params
[]
where
params
=
HashMap
.
fromList
[
(
"id"
,
nId
)
,
(
"label"
,
l
)
]
edges
::
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
edges
gn
=
Xmlbf
.
element
"edges"
HashMap
.
empty
$
P
.
concatMap
edge
gn
edge
::
G
.
Edge
->
[
Xmlbf
.
Node
]
edge
(
G
.
Edge
{
edge_id
=
eId
,
edge_source
=
es
,
edge_target
=
et
})
=
Xmlbf
.
element
"edge"
params
[]
where
params
=
HashMap
.
fromList
[
(
"id"
,
eId
)
,
(
"source"
,
es
)
,
(
"target"
,
et
)
]
------------------------------------------------------------------------
------------------------------------------------------------------------
-- | There is no Delete specific API for Graph since it can be deleted
-- | There is no Delete specific API for Graph since it can be deleted
-- as simple Node.
-- as simple Node.
type
GraphAPI
=
Get
'[
J
SON
]
Graph
type
GraphAPI
=
Get
'[
J
SON
]
Graph
...
@@ -114,8 +68,10 @@ type GraphAPI = Get '[JSON] Graph
...
@@ -114,8 +68,10 @@ type GraphAPI = Get '[JSON] Graph
:<|>
"versions"
:>
GraphVersionsAPI
:<|>
"versions"
:>
GraphVersionsAPI
data
GraphVersions
=
GraphVersions
{
gv_graph
::
Maybe
Int
data
GraphVersions
=
,
gv_repo
::
Int
}
deriving
(
Show
,
Generic
)
GraphVersions
{
gv_graph
::
Maybe
Int
,
gv_repo
::
Int
}
deriving
(
Show
,
Generic
)
instance
ToJSON
GraphVersions
instance
ToJSON
GraphVersions
instance
ToSchema
GraphVersions
instance
ToSchema
GraphVersions
...
...
src/Gargantext/Viz/Graph/GEXF.hs
0 → 100644
View file @
7bc490a3
{-|
Module : Gargantext.Viz.Graph
Description :
Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3
Maintainer : team@gargantext.org
Stability : experimental
Portability : POSIX
-}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE DataKinds #-}
{-# LANGUAGE DeriveGeneric #-}
{-# LANGUAGE FlexibleContexts #-}
{-# LANGUAGE FlexibleInstances #-}
{-# LANGUAGE NoImplicitPrelude #-}
{-# LANGUAGE OverloadedStrings #-}
-- allows to write Text literals
{-# LANGUAGE OverloadedLists #-}
-- allows to write Map and HashMap as lists
{-# LANGUAGE RankNTypes #-}
{-# LANGUAGE TypeOperators #-}
module
Gargantext.Viz.Graph.GEXF
where
import
Gargantext.Prelude
import
Gargantext.Viz.Graph
import
qualified
Data.HashMap.Lazy
as
HashMap
import
qualified
Gargantext.Prelude
as
P
import
qualified
Gargantext.Viz.Graph
as
G
import
qualified
Xmlbf
as
Xmlbf
-- Converts to GEXF format
-- See https://gephi.org/gexf/format/
instance
Xmlbf
.
ToXml
Graph
where
toXml
(
Graph
{
_graph_nodes
=
graphNodes
,
_graph_edges
=
graphEdges
})
=
root
graphNodes
graphEdges
where
root
::
[
G
.
Node
]
->
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
root
gn
ge
=
Xmlbf
.
element
"gexf"
params
$
meta
<>
(
graph
gn
ge
)
where
params
=
HashMap
.
fromList
[
(
"xmlns"
,
"http://www.gexf.net/1.2draft"
)
,
(
"version"
,
"1.2"
)
]
meta
=
Xmlbf
.
element
"meta"
params
$
creator
<>
desc
where
params
=
HashMap
.
fromList
[
(
"lastmodifieddate"
,
"2020-03-13"
)
]
creator
=
Xmlbf
.
element
"creator"
HashMap
.
empty
$
Xmlbf
.
text
"Gargantext.org"
desc
=
Xmlbf
.
element
"description"
HashMap
.
empty
$
Xmlbf
.
text
"Gargantext gexf file"
graph
::
[
G
.
Node
]
->
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
graph
gn
ge
=
Xmlbf
.
element
"graph"
params
$
(
nodes
gn
)
<>
(
edges
ge
)
where
params
=
HashMap
.
fromList
[
(
"mode"
,
"static"
)
,
(
"defaultedgetype"
,
"directed"
)
]
nodes
::
[
G
.
Node
]
->
[
Xmlbf
.
Node
]
nodes
gn
=
Xmlbf
.
element
"nodes"
HashMap
.
empty
$
P
.
concatMap
node'
gn
node'
::
G
.
Node
->
[
Xmlbf
.
Node
]
node'
(
G
.
Node
{
node_id
=
nId
,
node_label
=
l
})
=
Xmlbf
.
element
"node"
params
[]
where
params
=
HashMap
.
fromList
[
(
"id"
,
nId
)
,
(
"label"
,
l
)
]
edges
::
[
G
.
Edge
]
->
[
Xmlbf
.
Node
]
edges
gn
=
Xmlbf
.
element
"edges"
HashMap
.
empty
$
P
.
concatMap
edge
gn
edge
::
G
.
Edge
->
[
Xmlbf
.
Node
]
edge
(
G
.
Edge
{
edge_id
=
eId
,
edge_source
=
es
,
edge_target
=
et
})
=
Xmlbf
.
element
"edge"
params
[]
where
params
=
HashMap
.
fromList
[
(
"id"
,
eId
)
,
(
"source"
,
es
)
,
(
"target"
,
et
)
]
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment