Improve a bit phylo tests

ad332461 · Alfredo Di Napoli · bb43a634 · ad332461 · ad332461 · ad332461
Commit ad332461 authored Mar 25, 2024 by Alfredo Di Napoli
6 changed files
--- a/gargantext.cabal
+++ b/gargantext.cabal
@@ -36,8 +36,9 @@ data-files:
    test-data/ngrams/simple.json
    test-data/ngrams/simple.csv
    test-data/phylo/bpa_phylo_test.json
-    test-data/phylo/open_science.json
+    test-data/phylo/cleopatre.golden.json
    test-data/phylo/issue-290-small.golden.json
+    test-data/phylo/open_science.json
    test-data/phylo/small-phylo.golden.json
    test-data/phylo/small_phylo_docslist.csv
    test-data/phylo/small_phylo_ngramslist.csv
@@ -188,6 +189,7 @@ library
      Gargantext.Core.Viz.Phylo
      Gargantext.Core.Viz.Phylo.API
      Gargantext.Core.Viz.Phylo.API.Tools
+      Gargantext.Core.Viz.Phylo.Example
      Gargantext.Core.Viz.Phylo.PhyloExport
      Gargantext.Core.Viz.Phylo.PhyloMaker
      Gargantext.Core.Viz.Phylo.PhyloTools
@@ -353,7 +355,6 @@ library
      Gargantext.Core.Viz.Graph.Tools.Infomap
      Gargantext.Core.Viz.Graph.Utils
      Gargantext.Core.Viz.LegacyPhylo
-      Gargantext.Core.Viz.Phylo.Example
      Gargantext.Core.Viz.Phylo.Legacy.LegacyMain
      Gargantext.Core.Viz.Phylo.TemporalMatching
      Gargantext.Data.HashMap.Strict.Utils

--- a/test-data/phylo/cleopatre.golden.json
+++ b/test-data/phylo/cleopatre.golden.json
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--- a/test-data/phylo/small-phylo.golden.json
+++ b/test-data/phylo/small-phylo.golden.json
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\ No newline at end of file
--- a/test/Test/Offline/Phylo.hs
+++ b/test/Test/Offline/Phylo.hs
@@ -13,6 +13,7 @@ import Data.TreeDiff
 import Data.Vector qualified as V
 import Gargantext.Core.Viz.Phylo
 import Gargantext.Core.Viz.Phylo.API.Tools (readPhylo, writePhylo)
+import Gargantext.Core.Viz.Phylo.Example qualified as Cleopatre
 import Gargantext.Core.Viz.Phylo.PhyloExport
 import Gargantext.Core.Viz.Phylo.PhyloMaker (toPhylo, toPhyloWithoutLink)
 import Gargantext.Core.Viz.Phylo.PhyloTools
@@ -48,23 +49,30 @@ phyloConfig = PhyloConfig {
  , exportFilter = [ByBranchSize {_branch_size = 3.0}]
  }

-tests :: TestTree
+tests :: HasCallStack => TestTree
 tests = testGroup "Phylo" [
  testGroup "Export" [
      testCase "ngramsToLabel respects encoding" test_ngramsToLabel_01
    , testCase "ngramsToLabel is rendered correctly in CustomAttribute" test_ngramsToLabel_02
-    ]
+  ]
  , testGroup "toPhyloWithoutLink" [
-      testProperty "returns expected data" testSmallPhyloWithoutLinkExpectedOutput
-    ]
+    testProperty "returns expected data" testSmallPhyloWithoutLinkExpectedOutput
+  , testProperty "phyloCleopatre returns expected data" testCleopatreWithoutLinkExpectedOutput
+  ]
  , testGroup "toPhylo" [
-    testProperty "returns expected data" testSmallPhyloExpectedOutput
+    --testProperty "returns expected data" testSmallPhyloExpectedOutput
  ]
  , testGroup "relatedComponents" [
    testCase "finds simple connection" testRelComp_Connected
  ]
  ]

+testCleopatreWithoutLinkExpectedOutput :: HasCallStack => Property
+testCleopatreWithoutLinkExpectedOutput = monadicIO $ do
+  actual   <- pure $ toPhyloWithoutLink Cleopatre.docs Cleopatre.config
+  expected <- run $ readPhylo =<< getDataFileName "test-data/phylo/cleopatre.golden.json"
+  pure $ counterexample (show $ ansiWlEditExpr $ ediff' expected actual) (expected === actual)
+
 testSmallPhyloWithoutLinkExpectedOutput :: Property
 testSmallPhyloWithoutLinkExpectedOutput = monadicIO $ do
  bpaConfig      <- run $ getDataFileName "bench-data/phylo/bpa-config.json"
@@ -85,8 +93,8 @@ testSmallPhyloWithoutLinkExpectedOutput = monadicIO $ do
 testSmallPhyloExpectedOutput :: Property
 testSmallPhyloExpectedOutput = monadicIO $ do
  issue290PhyloSmall <- run $ setConfig phyloConfig <$> (readPhylo =<< getDataFileName "bench-data/phylo/issue-290-small.json")
-  expected <- run $ readPhylo =<< getDataFileName "test-data/phylo/issue-290-small.golden.json"
  let actual = toPhylo issue290PhyloSmall
+  expected <- run $ readPhylo =<< getDataFileName "test-data/phylo/issue-290-small.golden.json"
  pure $ counterexample (show $ ansiWlEditExpr $ ediff' expected actual) (expected === actual)

 test_ngramsToLabel_01 :: Assertion

--- a/test/drivers/tasty/Main.hs
+++ b/test/drivers/tasty/Main.hs
@@ -29,7 +29,7 @@ import qualified Test.Core.Similarity         as Similarity
 import Test.Tasty
 import Test.Tasty.Hspec

-main :: IO ()
+main :: HasCallStack => IO ()
 main = do
  utilSpec         <- testSpec "Utils" Utils.test
  clusteringSpec   <- testSpec "Graph Clustering" Graph.test