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haskell-gargantext
haskell-gargantext
Commit b423c47b authored by Alexandre Delanoë's avatar Alexandre Delanoë
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[FIX] merge

parents bea9480f 29fd6a4f
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README.md
View file @ b423c47b
...@@ -72,6 +72,52 @@ This will take a bit of time as it has to download/build the dependencies, but t ...@@ -72,6 +72,52 @@ This will take a bit of time as it has to download/build the dependencies, but t
#### With Cabal (recommanded) #### With Cabal (recommanded)
##### Turning off optimization flags
Create a `cabal.project.local` file (don't commit it to git!):
```
package gargantext
ghc-options: -fwrite-ide-info -hiedir=".stack-work/hiedb" -O0
package gargantext-admin
ghc-options: -O0
package gargantext-cli
ghc-options: -O0
package gargantext-db-obfuscation
ghc-options: -O0
package gargantext-import
ghc-options: -O0
package gargantext-init
ghc-options: -O0
package gargantext-invitations
ghc-options: -O0
package gargantext-phylo
ghc-options: -O0
package gargantext-server
ghc-options: -O0
package gargantext-upgrade
ghc-options: -O0
package gargantext-graph
ghc-options: -O0
package hmatrix
ghc-options: -O0
package sparse-linear
ghc-options: -O0
```
##### Building
First, into `nix-shell`: First, into `nix-shell`:
```shell ```shell
cabal update cabal update
......
bin/update-project-dependencies
View file @ b423c47b
...@@ -18,7 +18,7 @@ fi ...@@ -18,7 +18,7 @@ fi
# with the `sha256sum` result calculated on the `cabal.project` and # with the `sha256sum` result calculated on the `cabal.project` and
# `cabal.project.freeze`. This ensures the files stay deterministic so that CI # `cabal.project.freeze`. This ensures the files stay deterministic so that CI
# cache can kick in. # cache can kick in.
expected_cabal_project_hash="3f5d6b7f26cac4aa5a7f87ba0227a7671041dfe46643ddef79512eb49bd876ec" expected_cabal_project_hash="c9fe39301e8b60bfd183e60e7e25a14cd1c9c66d8739bf9041ca3f4db89db7c6"
expected_cabal_project_freeze_hash="db24c7d3006167102532e3101e2b49bae13d478003459c7d3f1d66590e57740a" expected_cabal_project_freeze_hash="db24c7d3006167102532e3101e2b49bae13d478003459c7d3f1d66590e57740a"
cabal --store-dir=$STORE_DIR v2-build --dry-run cabal --store-dir=$STORE_DIR v2-build --dry-run
......
cabal.project
View file @ b423c47b
...@@ -31,8 +31,8 @@ source-repository-package ...@@ -31,8 +31,8 @@ source-repository-package
source-repository-package source-repository-package
type: git type: git
location: https://github.com/adinapoli/haskell-opaleye.git location: https://github.com/garganscript/haskell-opaleye.git
tag: e9a29582ac66198dd2c2fdc3f8c8a4b1e6fbe004 tag: 6cf1bcfe215143efac17919cfd0abdd60e0f717c
source-repository-package source-repository-package
type: git type: git
...@@ -184,9 +184,6 @@ allow-newer: * ...@@ -184,9 +184,6 @@ allow-newer: *
package gargantext package gargantext
ghc-options: -fwrite-ide-info -hiedir=".stack-work/hiedb" ghc-options: -fwrite-ide-info -hiedir=".stack-work/hiedb"
package gargantext-graph
ghc-options: -O2 -fsimpl-tick-factor=10000 -fdicts-cheap -fdicts-strict -flate-dmd-anal -fno-state-hack
package hmatrix package hmatrix
ghc-options: -O2 -fsimpl-tick-factor=10000 -fdicts-cheap -fdicts-strict -flate-dmd-anal -fno-state-hack ghc-options: -O2 -fsimpl-tick-factor=10000 -fdicts-cheap -fdicts-strict -flate-dmd-anal -fno-state-hack
......
gargantext.cabal
View file @ b423c47b
cabal-version: 2.0 cabal-version: 3.4
-- This file has been generated from package.yaml by hpack version 0.35.1. -- This file has been generated from package.yaml by hpack version 0.35.1.
-- --
...@@ -13,7 +13,7 @@ homepage: https://gargantext.org ...@@ -13,7 +13,7 @@ homepage: https://gargantext.org
author: Gargantext Team author: Gargantext Team
maintainer: team@gargantext.org maintainer: team@gargantext.org
copyright: Copyright: (c) 2017-Present: see git logs and README copyright: Copyright: (c) 2017-Present: see git logs and README
license: AGPL-3 license: AGPL-3.0-or-later
license-file: LICENSE license-file: LICENSE
build-type: Simple build-type: Simple
data-files: data-files:
...@@ -42,6 +42,37 @@ data-files: ...@@ -42,6 +42,37 @@ data-files:
gargantext-cors-settings.toml gargantext-cors-settings.toml
.clippy.dhall .clippy.dhall
-- common options
-- https://vrom911.github.io/blog/common-stanzas
common defaults
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
default-language: Haskell2010
build-depends:
base >=4.7 && <5
-- optimizations
common optimized
ghc-options:
-O2
-threaded
-rtsopts
-with-rtsopts=-N
-Wmissing-signatures
-- When enabled, it swaps the hashing algorithm -- When enabled, it swaps the hashing algorithm
-- with a quicker (and less secure) version, which -- with a quicker (and less secure) version, which
-- runs faster in tests. -- runs faster in tests.
...@@ -61,6 +92,8 @@ flag no-phylo-debug-logs ...@@ -61,6 +92,8 @@ flag no-phylo-debug-logs
manual: True manual: True
library library
import:
defaults
exposed-modules: exposed-modules:
Gargantext Gargantext
Gargantext.API Gargantext.API
...@@ -99,6 +132,8 @@ library ...@@ -99,6 +132,8 @@ library
Gargantext.Core.Methods.Similarities Gargantext.Core.Methods.Similarities
Gargantext.Core.NLP Gargantext.Core.NLP
Gargantext.Core.NodeStory Gargantext.Core.NodeStory
Gargantext.Core.NodeStory.DB
Gargantext.Core.NodeStory.Types
Gargantext.Core.Text Gargantext.Core.Text
Gargantext.Core.Text.Context Gargantext.Core.Text.Context
Gargantext.Core.Text.Corpus.API Gargantext.Core.Text.Corpus.API
...@@ -317,6 +352,7 @@ library ...@@ -317,6 +352,7 @@ library
Gargantext.Database Gargantext.Database
Gargantext.Database.Action.Delete Gargantext.Database.Action.Delete
Gargantext.Database.Action.Flow.Annuaire Gargantext.Database.Action.Flow.Annuaire
Gargantext.Database.Action.Flow.Extract
Gargantext.Database.Action.Flow.List Gargantext.Database.Action.Flow.List
Gargantext.Database.Action.Flow.Pairing Gargantext.Database.Action.Flow.Pairing
Gargantext.Database.Action.Flow.Utils Gargantext.Database.Action.Flow.Utils
...@@ -394,24 +430,9 @@ library ...@@ -394,24 +430,9 @@ library
Gargantext.Utils.Servant Gargantext.Utils.Servant
Gargantext.Utils.UTCTime Gargantext.Utils.UTCTime
Paths_gargantext Paths_gargantext
ghc-options: -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wmissing-signatures -Wunused-binds -Wunused-imports -Werror -freduction-depth=300 -fprint-potential-instances
hs-source-dirs: hs-source-dirs:
src src
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wmissing-signatures -Wunused-binds -Wunused-imports -Werror -freduction-depth=300 -fprint-potential-instances
if flag(test-crypto) if flag(test-crypto)
cpp-options: -DTEST_CRYPTO cpp-options: -DTEST_CRYPTO
if flag(no-phylo-debug-logs) if flag(no-phylo-debug-logs)
...@@ -434,7 +455,6 @@ library ...@@ -434,7 +455,6 @@ library
, async ^>= 2.2.4 , async ^>= 2.2.4
, attoparsec ^>= 0.13.2.5 , attoparsec ^>= 0.13.2.5
, auto-update ^>= 0.1.6 , auto-update ^>= 0.1.6
, base >=4.7 && <5
, base16-bytestring ^>= 1.0.2.0 , base16-bytestring ^>= 1.0.2.0
, base64-bytestring ^>= 1.1.0.0 , base64-bytestring ^>= 1.1.0.0
, bimap >= 0.5.0 , bimap >= 0.5.0
...@@ -611,98 +631,35 @@ library ...@@ -611,98 +631,35 @@ library
, yaml ^>= 0.11.8.0 , yaml ^>= 0.11.8.0
, zip ^>= 1.7.2 , zip ^>= 1.7.2
, zlib ^>= 0.6.2.3 , zlib ^>= 0.6.2.3
default-language: Haskell2010
executable gargantext-admin executable gargantext-admin
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-admin bin/gargantext-admin
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
base extra
, extra
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, text , text
default-language: Haskell2010
executable gargantext-cbor2json
main-is: Main.hs
other-modules:
Paths_gargantext
hs-source-dirs:
bin/gargantext-cbor2json
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends:
aeson ^>= 1.5.6.0
, base ^>= 4.14.3
, bytestring ^>= 0.10.12.0
, extra ^>= 1.7.9
, gargantext
, gargantext-prelude
, serialise ^>= 0.2.4.0
, text ^>= 1.2.4.1
default-language: Haskell2010
executable gargantext-cli executable gargantext-cli
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
CleanCsvCorpus CleanCsvCorpus
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-cli bin/gargantext-cli
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
aeson ^>= 1.5.6.0 aeson ^>= 1.5.6.0
, async ^>= 2.2.4 , async ^>= 2.2.4
, base ^>= 4.14.3.0
, bytestring ^>= 0.10.12.0 , bytestring ^>= 0.10.12.0
, cassava ^>= 0.5.2.0 , cassava ^>= 0.5.2.0
, containers ^>= 0.6.5.1 , containers ^>= 0.6.5.1
...@@ -717,136 +674,80 @@ executable gargantext-cli ...@@ -717,136 +674,80 @@ executable gargantext-cli
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
, unordered-containers ^>= 0.2.16.0 , unordered-containers ^>= 0.2.16.0
, vector ^>= 0.12.3.0 , vector ^>= 0.12.3.0
default-language: Haskell2010
executable gargantext-db-obfuscation executable gargantext-db-obfuscation
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-db-obfuscation bin/gargantext-db-obfuscation
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
if flag(disable-db-obfuscation-executable) if flag(disable-db-obfuscation-executable)
buildable: False buildable: False
else else
build-depends: build-depends:
base extra
, extra
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, optparse-simple , optparse-simple
, postgresql-simple ^>= 0.6.4 , postgresql-simple ^>= 0.6.4
, text , text
default-language: Haskell2010
executable gargantext-import executable gargantext-import
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
default-extensions:
TypeOperators
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-import bin/gargantext-import
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
base ^>= 4.14.3.0 extra ^>= 1.7.9
, extra ^>= 1.7.9
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, servant-server ^>= 0.18.3 , servant-server ^>= 0.18.3
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
default-language: Haskell2010
executable gargantext-init executable gargantext-init
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-init bin/gargantext-init
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
base ^>= 4.14.3.0 cron ^>= 0.7.0
, cron ^>= 0.7.0
, extra ^>= 1.7.9 , extra ^>= 1.7.9
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
default-language: Haskell2010
executable gargantext-invitations executable gargantext-invitations
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-invitations bin/gargantext-invitations
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
base ^>= 4.14.3.0 extra ^>= 1.7.9
, extra ^>= 1.7.9
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
default-language: Haskell2010
executable gargantext-phylo executable gargantext-phylo
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
...@@ -872,7 +773,6 @@ executable gargantext-phylo ...@@ -872,7 +773,6 @@ executable gargantext-phylo
build-depends: build-depends:
aeson ^>= 1.5.6.0 aeson ^>= 1.5.6.0
, async ^>= 2.2.4 , async ^>= 2.2.4
, base ^>= 4.14.3.0
, bytestring ^>= 0.10.12.0 , bytestring ^>= 0.10.12.0
, cassava ^>= 0.5.2.0 , cassava ^>= 0.5.2.0
, containers ^>= 0.6.5.1 , containers ^>= 0.6.5.1
...@@ -889,33 +789,18 @@ executable gargantext-phylo ...@@ -889,33 +789,18 @@ executable gargantext-phylo
, time ^>= 1.9.3 , time ^>= 1.9.3
, unordered-containers ^>= 0.2.16.0 , unordered-containers ^>= 0.2.16.0
, vector ^>= 0.7.3 , vector ^>= 0.7.3
default-language: Haskell2010
executable gargantext-server executable gargantext-server
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-server bin/gargantext-server
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -O2 -Wcompat -Wmissing-signatures -rtsopts -threaded -with-rtsopts=-N -with-rtsopts=-T -fprof-auto
build-depends: build-depends:
base ^>= 4.14.3.0 cassava ^>= 0.5.2.0
, cassava ^>= 0.5.2.0
, containers ^>= 0.6.5.1 , containers ^>= 0.6.5.1
, extra ^>= 1.7.9 , extra ^>= 1.7.9
, full-text-search ^>= 0.2.1.4 , full-text-search ^>= 0.2.1.4
...@@ -927,41 +812,27 @@ executable gargantext-server ...@@ -927,41 +812,27 @@ executable gargantext-server
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
, unordered-containers ^>= 0.2.16.0 , unordered-containers ^>= 0.2.16.0
, vector ^>= 0.7.3 , vector ^>= 0.7.3
default-language: Haskell2010
executable gargantext-upgrade executable gargantext-upgrade
import:
defaults
, optimized
main-is: Main.hs main-is: Main.hs
other-modules: other-modules:
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
bin/gargantext-upgrade bin/gargantext-upgrade
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
build-depends: build-depends:
base ^>= 4.14.3.0 cron ^>= 0.7.0
, cron ^>= 0.7.0
, extra ^>= 1.7.9 , extra ^>= 1.7.9
, gargantext , gargantext
, gargantext-prelude , gargantext-prelude
, postgresql-simple ^>= 0.6.4 , postgresql-simple ^>= 0.6.4
, text ^>= 1.2.4.1 , text ^>= 1.2.4.1
default-language: Haskell2010
test-suite garg-test-tasty test-suite garg-test-tasty
import:
defaults
type: exitcode-stdio-1.0 type: exitcode-stdio-1.0
main-is: drivers/tasty/Main.hs main-is: drivers/tasty/Main.hs
other-modules: other-modules:
...@@ -998,28 +869,12 @@ test-suite garg-test-tasty ...@@ -998,28 +869,12 @@ test-suite garg-test-tasty
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
test test
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N
build-depends: build-depends:
QuickCheck ^>= 2.14.2 QuickCheck ^>= 2.14.2
, aeson ^>= 1.5.6.0 , aeson ^>= 1.5.6.0
, aeson-qq , aeson-qq
, async ^>= 2.2.4 , async ^>= 2.2.4
, base ^>= 4.14.3.0
, boolexpr ^>= 0.2 , boolexpr ^>= 0.2
, bytestring ^>= 0.10.12.0 , bytestring ^>= 0.10.12.0
, case-insensitive , case-insensitive
...@@ -1077,9 +932,10 @@ test-suite garg-test-tasty ...@@ -1077,9 +932,10 @@ test-suite garg-test-tasty
, wai , wai
, wai-extra , wai-extra
, warp , warp
default-language: Haskell2010
test-suite garg-test-hspec test-suite garg-test-hspec
import:
defaults
type: exitcode-stdio-1.0 type: exitcode-stdio-1.0
main-is: drivers/hspec/Main.hs main-is: drivers/hspec/Main.hs
other-modules: other-modules:
...@@ -1099,38 +955,12 @@ test-suite garg-test-hspec ...@@ -1099,38 +955,12 @@ test-suite garg-test-hspec
Paths_gargantext Paths_gargantext
hs-source-dirs: hs-source-dirs:
test test
default-extensions:
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GADTs
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NamedFieldPuns
NoImplicitPrelude
OverloadedStrings
RankNTypes
RecordWildCards
StrictData
DataKinds
DeriveGeneric
FlexibleContexts
FlexibleInstances
GeneralizedNewtypeDeriving
ImportQualifiedPost
MultiParamTypeClasses
NoImplicitPrelude
OverloadedStrings
RankNTypes
ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N
build-depends: build-depends:
QuickCheck ^>= 2.14.2 QuickCheck ^>= 2.14.2
, aeson ^>= 1.5.6.0 , aeson ^>= 1.5.6.0
, aeson-qq , aeson-qq
, async ^>= 2.2.4 , async ^>= 2.2.4
, base ^>= 4.14.3.0
, boolexpr ^>= 0.2 , boolexpr ^>= 0.2
, bytestring ^>= 0.10.12.0 , bytestring ^>= 0.10.12.0
, case-insensitive , case-insensitive
...@@ -1187,7 +1017,6 @@ test-suite garg-test-hspec ...@@ -1187,7 +1017,6 @@ test-suite garg-test-hspec
, wai , wai
, wai-extra , wai-extra
, warp , warp
default-language: Haskell2010
benchmark garg-bench benchmark garg-bench
main-is: Main.hs main-is: Main.hs
......
src/Gargantext/API.hs
View file @ b423c47b
...@@ -48,10 +48,8 @@ import Gargantext.API.Admin.Settings.CORS ...@@ -48,10 +48,8 @@ import Gargantext.API.Admin.Settings.CORS
import Gargantext.API.Admin.Types (FireWall(..), PortNumber, cookieSettings, jwtSettings, settings, corsSettings) import Gargantext.API.Admin.Types (FireWall(..), PortNumber, cookieSettings, jwtSettings, settings, corsSettings)
import Gargantext.API.EKG import Gargantext.API.EKG
import Gargantext.API.Middleware (logStdoutDevSanitised) import Gargantext.API.Middleware (logStdoutDevSanitised)
import Gargantext.API.Ngrams (saveNodeStoryImmediate)
import Gargantext.API.Routes import Gargantext.API.Routes
import Gargantext.API.Server (server) import Gargantext.API.Server (server)
import Gargantext.Core.NodeStory
import Gargantext.Database.Prelude qualified as DB import Gargantext.Database.Prelude qualified as DB
import Gargantext.Prelude hiding (putStrLn) import Gargantext.Prelude hiding (putStrLn)
import Gargantext.System.Logging import Gargantext.System.Logging
...@@ -74,7 +72,7 @@ startGargantext mode port file = withLoggerHoisted mode $ \logger -> do ...@@ -74,7 +72,7 @@ startGargantext mode port file = withLoggerHoisted mode $ \logger -> do
app <- makeApp env app <- makeApp env
mid <- makeGargMiddleware (env ^. settings.corsSettings) mode mid <- makeGargMiddleware (env ^. settings.corsSettings) mode
periodicActions <- schedulePeriodicActions env periodicActions <- schedulePeriodicActions env
run port (mid app) `finally` stopGargantext env periodicActions run port (mid app) `finally` stopGargantext periodicActions
where runDbCheck env = do where runDbCheck env = do
r <- runExceptT (runReaderT DB.dbCheck env) `catch` r <- runExceptT (runReaderT DB.dbCheck env) `catch`
...@@ -94,11 +92,10 @@ portRouteInfo port = do ...@@ -94,11 +92,10 @@ portRouteInfo port = do
-- | Stops the gargantext server and cancels all the periodic actions -- | Stops the gargantext server and cancels all the periodic actions
-- scheduled to run up to that point. -- scheduled to run up to that point.
-- TODO clean this Monad condition (more generic) ? -- TODO clean this Monad condition (more generic) ?
stopGargantext :: HasNodeStoryImmediateSaver env => env -> [ThreadId] -> IO () stopGargantext :: [ThreadId] -> IO ()
stopGargantext env scheduledPeriodicActions = do stopGargantext scheduledPeriodicActions = do
forM_ scheduledPeriodicActions killThread forM_ scheduledPeriodicActions killThread
putStrLn "----- Stopping gargantext -----" putStrLn "----- Stopping gargantext -----"
runReaderT saveNodeStoryImmediate env
-- | Schedules all sorts of useful periodic actions to be run while -- | Schedules all sorts of useful periodic actions to be run while
-- the server is alive accepting requests. -- the server is alive accepting requests.
......
src/Gargantext/API/Admin/EnvTypes.hs
View file @ b423c47b
...@@ -136,9 +136,6 @@ instance HasConnectionPool Env where ...@@ -136,9 +136,6 @@ instance HasConnectionPool Env where
instance HasNodeStoryEnv Env where instance HasNodeStoryEnv Env where
hasNodeStory = env_nodeStory hasNodeStory = env_nodeStory
instance HasNodeStoryVar Env where
hasNodeStoryVar = hasNodeStory . nse_getter
instance HasNodeStoryImmediateSaver Env where instance HasNodeStoryImmediateSaver Env where
hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate
...@@ -314,9 +311,6 @@ instance HasSettings DevEnv where ...@@ -314,9 +311,6 @@ instance HasSettings DevEnv where
instance HasNodeStoryEnv DevEnv where instance HasNodeStoryEnv DevEnv where
hasNodeStory = dev_env_nodeStory hasNodeStory = dev_env_nodeStory
instance HasNodeStoryVar DevEnv where
hasNodeStoryVar = hasNodeStory . nse_getter
instance HasNodeStoryImmediateSaver DevEnv where instance HasNodeStoryImmediateSaver DevEnv where
hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate
......
src/Gargantext/API/Dev.hs
View file @ b423c47b
...@@ -16,7 +16,6 @@ import Control.Monad (fail) ...@@ -16,7 +16,6 @@ import Control.Monad (fail)
import Gargantext.API.Admin.EnvTypes import Gargantext.API.Admin.EnvTypes
import Gargantext.API.Admin.Settings import Gargantext.API.Admin.Settings
import Gargantext.API.Errors.Types import Gargantext.API.Errors.Types
import Gargantext.API.Ngrams (saveNodeStoryImmediate)
import Gargantext.API.Prelude import Gargantext.API.Prelude
import Gargantext.Core.NLP (nlpServerMap) import Gargantext.Core.NLP (nlpServerMap)
import Gargantext.Core.NodeStory import Gargantext.Core.NodeStory
...@@ -72,9 +71,7 @@ runCmdDev env f = ...@@ -72,9 +71,7 @@ runCmdDev env f =
runCmdGargDev :: DevEnv -> GargM DevEnv BackendInternalError a -> IO a runCmdGargDev :: DevEnv -> GargM DevEnv BackendInternalError a -> IO a
runCmdGargDev env cmd = runCmdGargDev env cmd =
(either (fail . show) pure =<< runExceptT (runReaderT cmd env)) either (fail . show) pure =<< runExceptT (runReaderT cmd env)
`finally`
runReaderT saveNodeStoryImmediate env
runCmdDevNoErr :: DevEnv -> Cmd' DevEnv () a -> IO a runCmdDevNoErr :: DevEnv -> Cmd' DevEnv () a -> IO a
runCmdDevNoErr = runCmdDev runCmdDevNoErr = runCmdDev
......
src/Gargantext/API/Ngrams.hs
View file @ b423c47b
...@@ -60,7 +60,6 @@ module Gargantext.API.Ngrams ...@@ -60,7 +60,6 @@ module Gargantext.API.Ngrams
, r_history , r_history
, NgramsRepoElement(..) , NgramsRepoElement(..)
, saveNodeStory , saveNodeStory
, saveNodeStoryImmediate
, initRepo , initRepo
, TabType(..) , TabType(..)
...@@ -87,7 +86,7 @@ module Gargantext.API.Ngrams ...@@ -87,7 +86,7 @@ module Gargantext.API.Ngrams
) )
where where
import Control.Lens ((.~), view, (^.), (^..), (+~), (%~), (.~), msumOf, at, _Just, Each(..), (%%~), mapped, non, ifolded, to, withIndex, over) import Control.Lens ((.~), view, (^.), (^..), (+~), (%~), (.~), msumOf, at, _Just, Each(..), (%%~), mapped, ifolded, to, withIndex, over)
import Control.Monad.Reader import Control.Monad.Reader
import Data.Aeson.Text qualified as DAT import Data.Aeson.Text qualified as DAT
import Data.Foldable import Data.Foldable
...@@ -105,10 +104,10 @@ import Gargantext.API.Admin.Orchestrator.Types (JobLog(..), AsyncJobs) ...@@ -105,10 +104,10 @@ import Gargantext.API.Admin.Orchestrator.Types (JobLog(..), AsyncJobs)
import Gargantext.API.Admin.Types (HasSettings) import Gargantext.API.Admin.Types (HasSettings)
import Gargantext.API.Errors.Types import Gargantext.API.Errors.Types
import Gargantext.API.Metrics qualified as Metrics import Gargantext.API.Metrics qualified as Metrics
import Gargantext.API.Ngrams.Tools import Gargantext.API.Ngrams.Tools (getNodeStory)
import Gargantext.API.Ngrams.Types import Gargantext.API.Ngrams.Types
import Gargantext.API.Prelude import Gargantext.API.Prelude
import Gargantext.Core.NodeStory import Gargantext.Core.NodeStory (ArchiveList, HasNodeStory, HasNodeArchiveStoryImmediateSaver(..), HasNodeStoryImmediateSaver(..), NgramsStatePatch', a_history, a_state, a_version, currentVersion)
import Gargantext.Core.Types (ListType(..), NodeId, ListId, DocId, TODO, assertValid, HasValidationError, ContextId) import Gargantext.Core.Types (ListType(..), NodeId, ListId, DocId, TODO, assertValid, HasValidationError, ContextId)
import Gargantext.Core.Types.Query (Limit(..), Offset(..), MinSize(..), MaxSize(..)) import Gargantext.Core.Types.Query (Limit(..), Offset(..), MinSize(..), MaxSize(..))
import Gargantext.Database.Action.Metrics.NgramsByContext (getOccByNgramsOnlyFast) import Gargantext.Database.Action.Metrics.NgramsByContext (getOccByNgramsOnlyFast)
...@@ -123,7 +122,6 @@ import Gargantext.Database.Schema.Node (node_id, node_parent_id, node_user_id) ...@@ -123,7 +122,6 @@ import Gargantext.Database.Schema.Node (node_id, node_parent_id, node_user_id)
import Gargantext.Prelude hiding (log, to, toLower, (%), isInfixOf) import Gargantext.Prelude hiding (log, to, toLower, (%), isInfixOf)
import Gargantext.Prelude.Clock (hasTime, getTime) import Gargantext.Prelude.Clock (hasTime, getTime)
import Gargantext.Utils.Jobs (serveJobsAPI, MonadJobStatus(..)) import Gargantext.Utils.Jobs (serveJobsAPI, MonadJobStatus(..))
import GHC.Conc (readTVar, writeTVar)
import Servant hiding (Patch) import Servant hiding (Patch)
{- {-
...@@ -174,23 +172,10 @@ mkChildrenGroups addOrRem nt patches = ...@@ -174,23 +172,10 @@ mkChildrenGroups addOrRem nt patches =
------------------------------------------------------------------------ ------------------------------------------------------------------------
saveNodeStory :: ( MonadReader env m, MonadBase IO m, HasNodeStoryImmediateSaver env ) saveNodeStory :: ( MonadReader env m, MonadBase IO m, HasNodeStoryImmediateSaver env )
=> m () => NodeId -> ArchiveList -> m ()
saveNodeStory = do saveNodeStory nId a = do
saver <- view hasNodeStoryImmediateSaver saver <- view hasNodeStoryImmediateSaver
liftBase $ do liftBase $ saver nId a
--Gargantext.Prelude.putStrLn "---- Running node story saver ----"
saver
--Gargantext.Prelude.putStrLn "---- Node story saver finished ----"
saveNodeStoryImmediate :: ( MonadReader env m, MonadBase IO m, HasNodeStoryImmediateSaver env )
=> m ()
saveNodeStoryImmediate = do
saver <- view hasNodeStoryImmediateSaver
liftBase $ do
--Gargantext.Prelude.putStrLn "---- Running node story immediate saver ----"
saver
--Gargantext.Prelude.putStrLn "---- Node story immediate saver finished ----"
listTypeConflictResolution :: ListType -> ListType -> ListType listTypeConflictResolution :: ListType -> ListType -> ListType
listTypeConflictResolution _ _ = undefined -- TODO Use Map User ListType listTypeConflictResolution _ _ = undefined -- TODO Use Map User ListType
...@@ -256,19 +241,23 @@ setListNgrams :: HasNodeStory env err m ...@@ -256,19 +241,23 @@ setListNgrams :: HasNodeStory env err m
-> m () -> m ()
setListNgrams listId ngramsType ns = do setListNgrams listId ngramsType ns = do
-- printDebug "[setListNgrams]" (listId, ngramsType) -- printDebug "[setListNgrams]" (listId, ngramsType)
var <- getNodeStoryVar [listId] a <- getNodeStory listId
liftBase $ atomically $ do let a' = a & a_state . at ngramsType %~ (\mns' -> case mns' of
nls <- readTVar var
writeTVar var $
( unNodeStory
. at listId . _Just
. a_state
. at ngramsType
%~ (\mns' -> case mns' of
Nothing -> Just ns Nothing -> Just ns
Just ns' -> Just $ ns <> ns') Just ns' -> Just $ ns <> ns')
) nls saveNodeStory listId a'
saveNodeStory -- liftBase $ atomically $ do
-- nls <- readTVar var
-- writeTVar var $
-- ( unNodeStory
-- . at listId . _Just
-- . a_state
-- . at ngramsType
-- %~ (\mns' -> case mns' of
-- Nothing -> Just ns
-- Just ns' -> Just $ ns <> ns')
-- ) nls
-- saveNodeStory
newNgramsFromNgramsStatePatch :: NgramsStatePatch' -> [Ngrams] newNgramsFromNgramsStatePatch :: NgramsStatePatch' -> [Ngrams]
...@@ -292,11 +281,11 @@ commitStatePatch :: ( HasNodeStory env err m ...@@ -292,11 +281,11 @@ commitStatePatch :: ( HasNodeStory env err m
-> m (Versioned NgramsStatePatch') -> m (Versioned NgramsStatePatch')
commitStatePatch listId (Versioned _p_version p) = do commitStatePatch listId (Versioned _p_version p) = do
-- printDebug "[commitStatePatch]" listId -- printDebug "[commitStatePatch]" listId
var <- getNodeStoryVar [listId] a <- getNodeStory listId
archiveSaver <- view hasNodeArchiveStoryImmediateSaver archiveSaver <- view hasNodeArchiveStoryImmediateSaver
ns <- liftBase $ atomically $ readTVar var -- ns <- liftBase $ atomically $ readTVar var
let let
a = ns ^. unNodeStory . at listId . non initArchive -- a = ns ^. unNodeStory . at listId . non initArchive
-- apply patches from version p_version to a ^. a_version -- apply patches from version p_version to a ^. a_version
-- TODO Check this -- TODO Check this
--q = mconcat $ take (a ^. a_version - p_version) (a ^. a_history) --q = mconcat $ take (a ^. a_version - p_version) (a ^. a_history)
...@@ -327,9 +316,11 @@ commitStatePatch listId (Versioned _p_version p) = do ...@@ -327,9 +316,11 @@ commitStatePatch listId (Versioned _p_version p) = do
-} -}
-- printDebug "[commitStatePatch] a version" (a ^. a_version) -- printDebug "[commitStatePatch] a version" (a ^. a_version)
-- printDebug "[commitStatePatch] a' version" (a' ^. a_version) -- printDebug "[commitStatePatch] a' version" (a' ^. a_version)
let newNs = ( ns & unNodeStory . at listId .~ (Just a') -- let newNs = ( ns & unNodeStory . at listId .~ (Just a')
, Versioned (a' ^. a_version) q' -- , Versioned (a' ^. a_version) q'
) -- )
let newA = Versioned (a' ^. a_version) q'
-- NOTE Now is the only good time to save the archive history. We -- NOTE Now is the only good time to save the archive history. We
-- have the handle to the MVar and we need to save its exact -- have the handle to the MVar and we need to save its exact
...@@ -353,16 +344,15 @@ commitStatePatch listId (Versioned _p_version p) = do ...@@ -353,16 +344,15 @@ commitStatePatch listId (Versioned _p_version p) = do
-- archive was saved and applied) -- archive was saved and applied)
-- newNs' <- archiveSaver $ fst newNs -- newNs' <- archiveSaver $ fst newNs
liftBase $ do liftBase $ do
newNs' <- archiveSaver $ fst newNs -- newNs' <- archiveSaver $ fst newNs
atomically $ writeTVar var newNs' -- atomically $ writeTVar var newNs'
void $ archiveSaver listId a'
-- Save new ngrams -- Save new ngrams
_ <- insertNgrams (newNgramsFromNgramsStatePatch p) _ <- insertNgrams (newNgramsFromNgramsStatePatch p)
-- NOTE State (i.e. `NodeStory` can be saved asynchronously, i.e. with debounce) saveNodeStory listId a'
-- saveNodeStory
saveNodeStoryImmediate
pure $ snd newNs pure newA
...@@ -374,11 +364,11 @@ tableNgramsPull :: HasNodeStory env err m ...@@ -374,11 +364,11 @@ tableNgramsPull :: HasNodeStory env err m
-> m (Versioned NgramsTablePatch) -> m (Versioned NgramsTablePatch)
tableNgramsPull listId ngramsType p_version = do tableNgramsPull listId ngramsType p_version = do
-- printDebug "[tableNgramsPull]" (listId, ngramsType) -- printDebug "[tableNgramsPull]" (listId, ngramsType)
var <- getNodeStoryVar [listId] a <- getNodeStory listId
r <- liftBase $ atomically $ readTVar var -- r <- liftBase $ atomically $ readTVar var
let let
a = r ^. unNodeStory . at listId . non initArchive -- a = r ^. unNodeStory . at listId . non initArchive
q = mconcat $ take (a ^. a_version - p_version) (a ^. a_history) q = mconcat $ take (a ^. a_version - p_version) (a ^. a_history)
q_table = q ^. _PatchMap . at ngramsType . _Just q_table = q ^. _PatchMap . at ngramsType . _Just
...@@ -502,10 +492,9 @@ getNgramsTableMap :: HasNodeStory env err m ...@@ -502,10 +492,9 @@ getNgramsTableMap :: HasNodeStory env err m
-> TableNgrams.NgramsType -> TableNgrams.NgramsType
-> m (Versioned NgramsTableMap) -> m (Versioned NgramsTableMap)
getNgramsTableMap nodeId ngramsType = do getNgramsTableMap nodeId ngramsType = do
v <- getNodeStoryVar [nodeId] a <- getNodeStory nodeId
repo <- liftBase $ atomically $ readTVar v pure $ Versioned (a ^. a_version)
pure $ Versioned (repo ^. unNodeStory . at nodeId . _Just . a_version) (a ^. a_state . at ngramsType . _Just)
(repo ^. unNodeStory . at nodeId . _Just . a_state . at ngramsType . _Just)
dumpJsonTableMap :: HasNodeStory env err m dumpJsonTableMap :: HasNodeStory env err m
......
src/Gargantext/API/Ngrams/Tools.hs
View file @ b423c47b
...@@ -23,7 +23,7 @@ import Data.HashMap.Strict qualified as HM ...@@ -23,7 +23,7 @@ import Data.HashMap.Strict qualified as HM
import Data.Map.Strict qualified as Map import Data.Map.Strict qualified as Map
import Data.Set qualified as Set import Data.Set qualified as Set
import Data.Validity import Data.Validity
import GHC.Conc (TVar, readTVar) -- import GHC.Conc (TVar, readTVar)
import Gargantext.API.Ngrams.Types import Gargantext.API.Ngrams.Types
import Gargantext.Core.NodeStory import Gargantext.Core.NodeStory
import Gargantext.Core.Types (ListType(..), NodeId, ListId) import Gargantext.Core.Types (ListType(..), NodeId, ListId)
...@@ -40,10 +40,11 @@ type RootTerm = NgramsTerm ...@@ -40,10 +40,11 @@ type RootTerm = NgramsTerm
getRepo :: HasNodeStory env err m getRepo :: HasNodeStory env err m
=> [ListId] -> m NodeListStory => [ListId] -> m NodeListStory
getRepo listIds = do getRepo listIds = do
f <- getNodeListStory f <- getNodeListStoryMulti
v <- liftBase $ f listIds liftBase $ f listIds
v' <- liftBase $ atomically $ readTVar v -- v <- liftBase $ f listIds
pure $ v' -- v' <- liftBase $ atomically $ readTVar v
-- pure $ v'
repoSize :: Ord k1 => NodeStory (Map.Map k1 (Map.Map k2 a)) p repoSize :: Ord k1 => NodeStory (Map.Map k1 (Map.Map k2 a)) p
...@@ -56,21 +57,29 @@ repoSize repo node_id = Map.map Map.size state' ...@@ -56,21 +57,29 @@ repoSize repo node_id = Map.map Map.size state'
. a_state . a_state
getNodeStoryVar :: HasNodeStory env err m getNodeStory :: HasNodeStory env err m
=> [ListId] -> m (TVar NodeListStory) => ListId -> m ArchiveList
getNodeStoryVar l = do getNodeStory l = do
f <- getNodeListStory f <- getNodeListStory
v <- liftBase $ f l liftBase $ f l
pure v -- v <- liftBase $ f l
-- pure v
getNodeListStory :: HasNodeStory env err m getNodeListStory :: HasNodeStory env err m
=> m ([NodeId] -> IO (TVar NodeListStory)) => m (NodeId -> IO ArchiveList)
getNodeListStory = do getNodeListStory = do
env <- view hasNodeStory env <- view hasNodeStory
pure $ view nse_getter env pure $ view nse_getter env
getNodeListStoryMulti :: HasNodeStory env err m
=> m ([NodeId] -> IO NodeListStory)
getNodeListStoryMulti = do
env <- view hasNodeStory
pure $ view nse_getter_multi env
listNgramsFromRepo :: [ListId] listNgramsFromRepo :: [ListId]
-> NgramsType -> NgramsType
......
src/Gargantext/Core/NodeStory.hs
View file @ b423c47b
{-| {-|
Module : Gargantext.Core.NodeStory Module : Gargantext.Core.NodeStory
Description : Node API generation Description : NodeStory
Copyright : (c) CNRS, 2017-Present Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3 License : AGPL + CECILL v3
Maintainer : team@gargantext.org Maintainer : team@gargantext.org
...@@ -40,51 +40,20 @@ TODO: ...@@ -40,51 +40,20 @@ TODO:
- charger les listes - charger les listes
-} -}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE Arrows #-} {-# LANGUAGE Arrows #-}
{-# LANGUAGE ConstraintKinds #-} {-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE QuasiQuotes #-} {-# LANGUAGE QuasiQuotes #-}
{-# LANGUAGE TemplateHaskell #-} {-# LANGUAGE TemplateHaskell #-}
module Gargantext.Core.NodeStory module Gargantext.Core.NodeStory
( HasNodeStory ( module Gargantext.Core.NodeStory.Types
, HasNodeStoryEnv
, hasNodeStory
, HasNodeStoryVar
, hasNodeStoryVar
, HasNodeStoryImmediateSaver
, hasNodeStoryImmediateSaver
, HasNodeArchiveStoryImmediateSaver
, hasNodeArchiveStoryImmediateSaver
, NodeStory(..)
, NgramsStatePatch'
, NodeListStory
, ArchiveList
, initNodeListStoryMock
, NodeStoryEnv(..)
, initNodeStory
, nse_getter
, nse_saver_immediate
, nse_archive_saver_immediate
, nse_var
, unNodeStory
, getNodesArchiveHistory , getNodesArchiveHistory
, Archive(..) , Archive(..)
, initArchive
, archiveAdvance
, unionArchives
, a_history
, a_state
, a_version
, nodeExists , nodeExists
, runPGSQuery
, runPGSAdvisoryLock
, runPGSAdvisoryUnlock
, runPGSAdvisoryXactLock
, getNodesIdWithType , getNodesIdWithType
, fromDBNodeStoryEnv , fromDBNodeStoryEnv
, upsertNodeStories , upsertNodeStories
, getNodeStory -- , getNodeStory
, nodeStoriesQuery , nodeStoriesQuery
, currentVersion , currentVersion
, archiveStateFromList , archiveStateFromList
...@@ -92,282 +61,28 @@ module Gargantext.Core.NodeStory ...@@ -92,282 +61,28 @@ module Gargantext.Core.NodeStory
, fixNodeStoryVersions ) , fixNodeStoryVersions )
where where
import Codec.Serialise.Class import Control.Lens ((^.), (.~), (%~), non, _Just, at, view)
import Control.Lens (makeLenses, Getter, (^.), (.~), (%~), non, _Just, at, view)
import Control.Monad.Except import Control.Monad.Except
import Control.Monad.Reader
import Data.Aeson hiding ((.=), decode)
import Data.HashMap.Strict (HashMap)
import Data.HashMap.Strict qualified as HashMap
import Data.Map.Strict qualified as Map import Data.Map.Strict qualified as Map
import Data.Map.Strict.Patch qualified as PM
import Data.Monoid import Data.Monoid
import Data.Pool (Pool, withResource) import Data.Pool (Pool, withResource)
import Data.Profunctor.Product.TH (makeAdaptorAndInstance)
import Data.Semigroup
import Data.Set qualified as Set import Data.Set qualified as Set
import Database.PostgreSQL.Simple qualified as PGS import Database.PostgreSQL.Simple qualified as PGS
import Database.PostgreSQL.Simple.FromField (FromField(fromField), fromJSONField)
import Database.PostgreSQL.Simple.SqlQQ (sql) import Database.PostgreSQL.Simple.SqlQQ (sql)
import Database.PostgreSQL.Simple.ToField qualified as PGS import Database.PostgreSQL.Simple.ToField qualified as PGS
import Database.PostgreSQL.Simple.Types (Values(..), QualifiedIdentifier(..))
import GHC.Conc (TVar, newTVar, readTVar, writeTVar)
import Gargantext.API.Ngrams.Types import Gargantext.API.Ngrams.Types
import Gargantext.Core (toDBid) import Gargantext.Core.NodeStory.DB
import Gargantext.Core.Types (ListId, NodeId(..), NodeType) import Gargantext.Core.NodeStory.Types
import Gargantext.Core.Utils.Prefix (unPrefix) import Gargantext.Core.Types (ListId, NodeId(..))
import Gargantext.Database.Admin.Config () import Gargantext.Database.Admin.Config ()
import Gargantext.Database.Prelude (DbCmd', HasConnectionPool(..)) import Gargantext.Database.Prelude (HasConnectionPool(..))
import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams
import Gargantext.Database.Query.Table.Node.Error (HasNodeError())
import Gargantext.Database.Schema.Ngrams (NgramsType)
import Gargantext.Prelude hiding (to) import Gargantext.Prelude hiding (to)
import Gargantext.Prelude.Database import Gargantext.Prelude.Database
import Opaleye (DefaultFromField(..), SqlJsonb, fromPGSFromField)
------------------------------------------------------------------------
data NodeStoryEnv = NodeStoryEnv
{ _nse_var :: !(TVar NodeListStory)
, _nse_saver_immediate :: !(IO ())
, _nse_archive_saver_immediate :: !(NodeListStory -> IO NodeListStory)
, _nse_getter :: !([NodeId] -> IO (TVar NodeListStory))
--, _nse_cleaner :: !(IO ()) -- every 12 hours: cleans the repos of unused NodeStories
-- , _nse_lock :: !FileLock -- TODO (it depends on the option: if with database or file only)
}
deriving (Generic)
type HasNodeStory env err m = ( DbCmd' env err m
, MonadReader env m
, MonadError err m
, HasNodeStoryEnv env
, HasNodeError err
)
class (HasNodeStoryVar env, HasNodeStoryImmediateSaver env)
=> HasNodeStoryEnv env where
hasNodeStory :: Getter env NodeStoryEnv
class HasNodeStoryVar env where
hasNodeStoryVar :: Getter env ([NodeId] -> IO (TVar NodeListStory))
class HasNodeStoryImmediateSaver env where
hasNodeStoryImmediateSaver :: Getter env (IO ())
class HasNodeArchiveStoryImmediateSaver env where
hasNodeArchiveStoryImmediateSaver :: Getter env (NodeListStory -> IO NodeListStory)
------------------------------------------------------------------------
{- | Node Story for each NodeType where the Key of the Map is NodeId
TODO : generalize for any NodeType, let's start with NodeList which
is implemented already
-}
newtype NodeStory s p = NodeStory { _unNodeStory :: Map NodeId (Archive s p) }
deriving (Generic, Show, Eq)
instance (FromJSON s, FromJSON p) => FromJSON (NodeStory s p)
instance (ToJSON s, ToJSON p) => ToJSON (NodeStory s p)
instance (Serialise s, Serialise p) => Serialise (NodeStory s p)
data Archive s p = Archive
{ _a_version :: !Version
, _a_state :: !s
, _a_history :: ![p]
-- first patch in the list is the most recent
-- We use `take` in `commitStatePatch`, that's why.
-- History is immutable, we just insert things on top of existing
-- list.
-- We don't need to store the whole history in memory, this
-- structure holds only recent history, the one that will be
-- inserted to the DB.
}
deriving (Generic, Show, Eq)
instance (Serialise s, Serialise p) => Serialise (Archive s p)
type NodeListStory = NodeStory NgramsState' NgramsStatePatch'
-- NOTE: 'type NgramsTableMap = Map NgramsTerm NgramsRepoElement'
type NgramsState' = Map TableNgrams.NgramsType NgramsTableMap
type NgramsStatePatch' = PatchMap TableNgrams.NgramsType NgramsTablePatch
instance Serialise NgramsStatePatch'
instance FromField (Archive NgramsState' NgramsStatePatch')
where
fromField = fromJSONField
instance DefaultFromField SqlJsonb (Archive NgramsState' NgramsStatePatch')
where
defaultFromField = fromPGSFromField
-- | Combine `NgramsState'`. This is because the structure is (Map
-- NgramsType (Map ...)) and the default `(<>)` operator is
-- left-biased
-- (https://hackage.haskell.org/package/containers-0.6.6/docs/Data-Map-Internal.html#v:union)
combineState :: NgramsState' -> NgramsState' -> NgramsState'
combineState = Map.unionWith (<>)
-- This is not a typical Semigroup instance. The state is not
-- appended, instead it is replaced with the second entry. This is
-- because state changes with each version. We have to take into
-- account the removal of terms as well.
-- instance (Semigroup s, Semigroup p) => Semigroup (Archive s p) where
-- (<>) (Archive { _a_history = p }) (Archive { _a_version = v'
-- , _a_state = s'
-- , _a_history = p' }) =
-- Archive { _a_version = v'
-- , _a_state = s'
-- , _a_history = p' <> p }
-- instance (Monoid s, Semigroup p) => Monoid (Archive s p) where
-- mempty = Archive { _a_version = 0
-- , _a_state = mempty
-- , _a_history = [] }
instance (FromJSON s, FromJSON p) => FromJSON (Archive s p) where
parseJSON = genericParseJSON $ unPrefix "_a_"
instance (ToJSON s, ToJSON p) => ToJSON (Archive s p) where
toJSON = genericToJSON $ unPrefix "_a_"
toEncoding = genericToEncoding $ unPrefix "_a_"
-- | This is the normal way to update archive state, bumping the
-- version and history. Resulting state is taken directly from new
-- archive, omitting old archive completely.
archiveAdvance :: (Semigroup s, Semigroup p) => Archive s p -> Archive s p -> Archive s p
archiveAdvance aOld aNew = aNew { _a_history = _a_history aNew <> _a_history aOld }
-- | This is to merge archive states.
unionArchives :: (Semigroup s, Semigroup p) => Archive s p -> Archive s p -> Archive s p
unionArchives aOld aNew = aNew { _a_state = _a_state aOld <> _a_state aNew
, _a_history = _a_history aNew <> _a_history aOld }
------------------------------------------------------------------------
initNodeStory :: (Monoid s, Semigroup p) => NodeId -> NodeStory s p
initNodeStory ni = NodeStory $ Map.singleton ni initArchive
initArchive :: (Monoid s, Semigroup p) => Archive s p
initArchive = Archive { _a_version = 0
, _a_state = mempty
, _a_history = [] }
initNodeListStoryMock :: NodeListStory
initNodeListStoryMock = NodeStory $ Map.singleton nodeListId archive
where
nodeListId = 0
archive = Archive { _a_version = 0
, _a_state = ngramsTableMap
, _a_history = [] }
ngramsTableMap = Map.singleton TableNgrams.NgramsTerms
$ Map.fromList
[ (n ^. ne_ngrams, ngramsElementToRepo n)
| n <- mockTable ^. _NgramsTable
]
------------------------------------------------------------------------
------------------------------------------------------------------------
-- | Lenses at the bottom of the file because Template Haskell would reorder order of execution in others cases
makeLenses ''NodeStoryEnv
makeLenses ''NodeStory
makeLenses ''Archive
----------------------------------------------------------------------
data NodeStoryPoly nid v ngtid ngid nre =
NodeStoryDB { node_id :: !nid
, version :: !v
, ngrams_type_id :: !ngtid
, ngrams_id :: !ngid
, ngrams_repo_element :: !nre }
deriving (Eq)
data NodeStoryArchivePoly nid a =
NodeStoryArchiveDB { a_node_id :: !nid
, archive :: !a }
deriving (Eq)
$(makeAdaptorAndInstance "pNodeStory" ''NodeStoryPoly)
$(makeAdaptorAndInstance "pNodeArchiveStory" ''NodeStoryArchivePoly)
-- type NodeStoryWrite = NodeStoryPoly (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryRead = NodeStoryPoly (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryArchiveWrite = NodeStoryArchivePoly (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryArchiveRead = NodeStoryArchivePoly (Column SqlInt4) (Column SqlJsonb)
type ArchiveList = Archive NgramsState' NgramsStatePatch'
-- DB stuff
nodeExists :: PGS.Connection -> NodeId -> IO Bool
nodeExists c nId = (== [PGS.Only True])
<$> runPGSQuery c [sql| SELECT true FROM nodes WHERE id = ? LIMIT 1 |]
(PGS.Only nId)
getNodesIdWithType :: PGS.Connection -> NodeType -> IO [NodeId]
getNodesIdWithType c nt = do
ns <- runPGSQuery c query (PGS.Only $ toDBid nt)
pure $ map (\(PGS.Only nId) -> UnsafeMkNodeId nId) ns
where
query :: PGS.Query
query = [sql| SELECT id FROM nodes WHERE typename = ? |]
-- /!\ This function is using an hard coded parameter
-- which depends on the Ngrams List Flow
-- Version > 5 is hard coded because by default
-- first version of history of manual change is 6
getNodesArchiveHistory :: PGS.Connection
-> [NodeId]
-> IO [(NodeId, (Map NgramsType [HashMap NgramsTerm NgramsPatch]))]
getNodesArchiveHistory c nodesId = do
as <- runPGSQuery c query (PGS.Only $ Values fields nodesId)
:: IO [(Int, TableNgrams.NgramsType, NgramsTerm, NgramsPatch)]
pure $ map (\(nId, ngramsType, terms, patch)
-> ( UnsafeMkNodeId nId
, Map.singleton ngramsType [HashMap.singleton terms patch]
)
) as
where
fields = [QualifiedIdentifier Nothing "int4"]
query :: PGS.Query
query = [sql| WITH nodes_id(nid) as (?)
SELECT node_id, ngrams_type_id, terms, patch
FROM node_story_archive_history
JOIN ngrams ON ngrams.id = ngrams_id
JOIN nodes_id n ON node_id = n.nid
WHERE version > 5
ORDER BY (version, node_story_archive_history.id) DESC
|]
insertNodeArchiveHistory :: PGS.Connection -> NodeId -> Version -> [NgramsStatePatch'] -> IO ()
insertNodeArchiveHistory _ _ _ [] = pure ()
insertNodeArchiveHistory c nodeId version (h:hs) = do
let tuples = mconcat $ (\(nType, NgramsTablePatch patch) ->
(\(term, p) ->
(nodeId, nType, term, p)) <$> PM.toList patch) <$> PM.toList h :: [(NodeId, TableNgrams.NgramsType, NgramsTerm, NgramsPatch)]
tuplesM <- mapM (\(nId, nType, term, patch) -> do
[PGS.Only ngramsId] <- runPGSReturning c qInsert [PGS.Only term] :: IO [PGS.Only Int]
pure (nId, nType, ngramsId, term, patch)
) tuples :: IO [(NodeId, TableNgrams.NgramsType, Int, NgramsTerm, NgramsPatch)]
_ <- runPGSExecuteMany c query $ ((\(nId, nType, termId, _term, patch) -> (nId, nType, termId, patch, version)) <$> tuplesM)
_ <- insertNodeArchiveHistory c nodeId version hs
pure ()
where
qInsert :: PGS.Query
qInsert = [sql|INSERT INTO ngrams (terms) VALUES (?)
ON CONFLICT (terms) DO UPDATE SET terms = excluded.terms
RETURNING id|]
-- https://stackoverflow.com/questions/39224438/postgresql-insert-if-foreign-key-exists
query :: PGS.Query
query = [sql| INSERT INTO node_story_archive_history(node_id, ngrams_type_id, ngrams_id, patch, version)
VALUES (?, ?, ?, ?, ?)
|]
getNodeStory :: PGS.Connection -> NodeId -> IO NodeListStory getNodeStory' :: PGS.Connection -> NodeId -> IO ArchiveList
getNodeStory c nId = do getNodeStory' c nId = do
--res <- withResource pool $ \c -> runSelect c query :: IO [NodeStoryPoly NodeId Version Int Int NgramsRepoElement] --res <- withResource pool $ \c -> runSelect c query :: IO [NodeStoryPoly NodeId Version Int Int NgramsRepoElement]
res <- runPGSQuery c nodeStoriesQuery (PGS.Only $ PGS.toField nId) :: IO [(Version, TableNgrams.NgramsType, NgramsTerm, NgramsRepoElement)] res <- runPGSQuery c nodeStoriesQuery (PGS.Only $ PGS.toField nId) :: IO [(Version, TableNgrams.NgramsType, NgramsTerm, NgramsRepoElement)]
-- We have multiple rows with same node_id and different (ngrams_type_id, ngrams_id). -- We have multiple rows with same node_id and different (ngrams_type_id, ngrams_id).
...@@ -390,21 +105,17 @@ getNodeStory c nId = do ...@@ -390,21 +105,17 @@ getNodeStory c nId = do
pure () pure ()
-} -}
pure $ NodeStory $ Map.singleton nId $ foldl combine initArchive dbData pure $ foldl combine initArchive dbData
where where
-- NOTE (<>) for Archive doesn't concatenate states, so we have to use `combine` -- NOTE (<>) for Archive doesn't concatenate states, so we have to use `combine`
combine a1 a2 = a1 & a_state %~ combineState (a2 ^. a_state) combine a1 a2 = a1 & a_state %~ combineState (a2 ^. a_state)
& a_version .~ (a2 ^. a_version) -- version should be updated from list, not taken from the empty Archive & a_version .~ (a2 ^. a_version) -- version should be updated from list, not taken from the empty Archive
nodeStoriesQuery :: PGS.Query
nodeStoriesQuery = [sql| SELECT version, ngrams_type_id, terms, ngrams_repo_element
FROM node_stories
JOIN ngrams ON ngrams.id = ngrams_id
WHERE node_id = ?
|]
type ArchiveStateList = [(TableNgrams.NgramsType, NgramsTerm, NgramsRepoElement)] getNodeStory :: PGS.Connection -> NodeId -> IO NodeListStory
type ArchiveStateSet = Set.Set (TableNgrams.NgramsType, NgramsTerm) getNodeStory c nId = do
a <- getNodeStory' c nId
pure $ NodeStory $ Map.singleton nId a
-- |Functions to convert archive state (which is a `Map NgramsType -- |Functions to convert archive state (which is a `Map NgramsType
-- (Map NgramsTerm NgramsRepoElement`)) to/from a flat list -- (Map NgramsTerm NgramsRepoElement`)) to/from a flat list
...@@ -426,53 +137,6 @@ insertNodeStory :: PGS.Connection -> NodeId -> ArchiveList -> IO () ...@@ -426,53 +137,6 @@ insertNodeStory :: PGS.Connection -> NodeId -> ArchiveList -> IO ()
insertNodeStory c nId a = do insertNodeStory c nId a = do
insertArchiveStateList c nId (a ^. a_version) (archiveStateToList $ a ^. a_state) insertArchiveStateList c nId (a ^. a_version) (archiveStateToList $ a ^. a_state)
insertArchiveStateList :: PGS.Connection -> NodeId -> Version -> ArchiveStateList -> IO ()
insertArchiveStateList c nodeId version as = do
mapM_ performInsert as
where
performInsert (ngramsType, ngrams, ngramsRepoElement) = do
[PGS.Only ngramsId] <- tryInsertTerms ngrams
_ <- case ngramsRepoElement ^. nre_root of
Nothing -> pure []
Just r -> tryInsertTerms r
mapM_ tryInsertTerms $ ngramsRepoElement ^. nre_children
runPGSExecute c query (nodeId, ngramsId, version, ngramsType, ngramsRepoElement)
tryInsertTerms :: NgramsTerm -> IO [PGS.Only Int]
tryInsertTerms t = runPGSReturning c qInsert [PGS.Only t]
qInsert :: PGS.Query
qInsert = [sql|INSERT INTO ngrams (terms) VALUES (?)
ON CONFLICT (terms) DO UPDATE SET terms = excluded.terms
RETURNING id|]
query :: PGS.Query
query = [sql|INSERT INTO node_stories(node_id, ngrams_id, version, ngrams_type_id, ngrams_repo_element)
VALUES (?, ?, ?, ?, ? :: jsonb)
|]
deleteArchiveStateList :: PGS.Connection -> NodeId -> ArchiveStateList -> IO ()
deleteArchiveStateList c nodeId as = do
mapM_ (\(nt, n, _) -> runPGSExecute c query (nodeId, nt, n)) as
where
query :: PGS.Query
query = [sql| DELETE FROM node_stories
WHERE node_id = ? AND ngrams_type_id = ?
AND ngrams_id IN (SELECT id FROM ngrams WHERE terms = ?)
|]
updateArchiveStateList :: PGS.Connection -> NodeId -> Version -> ArchiveStateList -> IO ()
updateArchiveStateList c nodeId version as = do
let params = (\(nt, n, nre) -> (nre, version, nodeId, nt, n)) <$> as
mapM_ (runPGSExecute c query) params
where
query :: PGS.Query
query = [sql| UPDATE node_stories
SET ngrams_repo_element = ?, version = ?
WHERE node_id = ? AND ngrams_type_id = ?
AND ngrams_id IN (SELECT id FROM ngrams WHERE terms = ?)
|]
-- | This function updates the node story and archive for given node_id. -- | This function updates the node story and archive for given node_id.
updateNodeStory :: PGS.Connection -> NodeId -> ArchiveList -> ArchiveList -> IO () updateNodeStory :: PGS.Connection -> NodeId -> ArchiveList -> ArchiveList -> IO ()
updateNodeStory c nodeId currentArchive newArchive = do updateNodeStory c nodeId currentArchive newArchive = do
...@@ -523,13 +187,6 @@ updateNodeStory c nodeId currentArchive newArchive = do ...@@ -523,13 +187,6 @@ updateNodeStory c nodeId currentArchive newArchive = do
-- , uWhere = (\row -> node_id row .== sqlInt4 nId) -- , uWhere = (\row -> node_id row .== sqlInt4 nId)
-- , uReturning = rCount } -- , uReturning = rCount }
-- nodeStoryRemove :: Pool PGS.Connection -> NodeId -> IO Int64
-- nodeStoryRemove pool (NodeId nId) = withResource pool $ \c -> runDelete c delete
-- where
-- delete = Delete { dTable = nodeStoryTable
-- , dWhere = (\row -> node_id row .== sqlInt4 nId)
-- , dReturning = rCount }
upsertNodeStories :: PGS.Connection -> NodeId -> ArchiveList -> IO () upsertNodeStories :: PGS.Connection -> NodeId -> ArchiveList -> IO ()
upsertNodeStories c nodeId newArchive = do upsertNodeStories c nodeId newArchive = do
-- printDebug "[upsertNodeStories] START nId" nId -- printDebug "[upsertNodeStories] START nId" nId
...@@ -551,21 +208,6 @@ upsertNodeStories c nodeId newArchive = do ...@@ -551,21 +208,6 @@ upsertNodeStories c nodeId newArchive = do
-- printDebug "[upsertNodeStories] STOP nId" nId -- printDebug "[upsertNodeStories] STOP nId" nId
updateNodeStoryVersion :: PGS.Connection -> NodeId -> ArchiveList -> IO ()
updateNodeStoryVersion c nodeId newArchive = do
let ngramsTypes = Map.keys $ newArchive ^. a_state
mapM_ (\nt -> runPGSExecute c query (newArchive ^. a_version, nodeId, nt)) ngramsTypes
where
query :: PGS.Query
query = [sql|UPDATE node_stories
SET version = ?
WHERE node_id = ?
AND ngrams_type_id = ?|]
writeNodeStories :: PGS.Connection -> NodeListStory -> IO ()
writeNodeStories c (NodeStory nls) = do
mapM_ (\(nId, a) -> upsertNodeStories c nId a) $ Map.toList nls
-- | Returns a `NodeListStory`, updating the given one for given `NodeId` -- | Returns a `NodeListStory`, updating the given one for given `NodeId`
nodeStoryInc :: PGS.Connection -> NodeListStory -> NodeId -> IO NodeListStory nodeStoryInc :: PGS.Connection -> NodeListStory -> NodeId -> IO NodeListStory
nodeStoryInc c ns@(NodeStory nls) nId = do nodeStoryInc c ns@(NodeStory nls) nId = do
...@@ -575,34 +217,10 @@ nodeStoryInc c ns@(NodeStory nls) nId = do ...@@ -575,34 +217,10 @@ nodeStoryInc c ns@(NodeStory nls) nId = do
pure $ NodeStory $ Map.unionWith archiveAdvance nls' nls pure $ NodeStory $ Map.unionWith archiveAdvance nls' nls
Just _ -> pure ns Just _ -> pure ns
nodeStoryIncrementalRead :: PGS.Connection -> Maybe NodeListStory -> [NodeId] -> IO NodeListStory
nodeStoryIncrementalRead _ Nothing [] = pure $ NodeStory $ Map.empty
nodeStoryIncrementalRead c Nothing (ni:ns) = do
m <- getNodeStory c ni
nodeStoryIncrementalRead c (Just m) ns
nodeStoryIncrementalRead c (Just nls) ns = foldM (\m n -> nodeStoryInc c m n) nls ns
-- nodeStoryDec :: Pool PGS.Connection -> NodeListStory -> NodeId -> IO NodeListStory
-- nodeStoryDec pool ns@(NodeStory nls) ni = do
-- case Map.lookup ni nls of
-- Nothing -> do
-- _ <- nodeStoryRemove pool ni
-- pure ns
-- Just _ -> do
-- let ns' = Map.filterWithKey (\k _v -> k /= ni) nls
-- _ <- nodeStoryRemove pool ni
-- pure $ NodeStory ns'
------------------------------------
-- | NgramsRepoElement contains, in particular, `nre_list`, -- | NgramsRepoElement contains, in particular, `nre_list`,
-- `nre_parent` and `nre_children`. We want to make sure that all -- `nre_parent` and `nre_children`. We want to make sure that all
-- children entries (i.e. ones that have `nre_parent`) have the same -- children entries (i.e. ones that have `nre_parent`) have the same
-- `list` as their parent entry. -- `list` as their parent entry.
fixChildrenTermTypes :: NodeListStory -> NodeListStory
fixChildrenTermTypes (NodeStory nls) =
NodeStory $ Map.fromList [ (nId, a & a_state %~ fixChildrenInNgramsStatePatch)
| (nId, a) <- Map.toList nls ]
fixChildrenInNgramsStatePatch :: NgramsState' -> NgramsState' fixChildrenInNgramsStatePatch :: NgramsState' -> NgramsState'
fixChildrenInNgramsStatePatch ns = archiveStateFromList $ nsParents <> nsChildrenFixed fixChildrenInNgramsStatePatch ns = archiveStateFromList $ nsParents <> nsChildrenFixed
where where
...@@ -623,11 +241,6 @@ fixChildrenInNgramsStatePatch ns = archiveStateFromList $ nsParents <> nsChildre ...@@ -623,11 +241,6 @@ fixChildrenInNgramsStatePatch ns = archiveStateFromList $ nsParents <> nsChildre
-- | Sometimes, when we upload a new list, a child can be left without -- | Sometimes, when we upload a new list, a child can be left without
-- a parent. Find such ngrams and set their 'root' and 'parent' to -- a parent. Find such ngrams and set their 'root' and 'parent' to
-- 'Nothing'. -- 'Nothing'.
fixChildrenWithNoParent :: NodeListStory -> NodeListStory
fixChildrenWithNoParent (NodeStory nls) =
NodeStory $ Map.fromList [ (nId, a & a_state %~ fixChildrenWithNoParentStatePatch)
| (nId, a) <- Map.toList nls ]
fixChildrenWithNoParentStatePatch :: NgramsState' -> NgramsState' fixChildrenWithNoParentStatePatch :: NgramsState' -> NgramsState'
fixChildrenWithNoParentStatePatch ns = archiveStateFromList $ nsParents <> nsChildrenFixed fixChildrenWithNoParentStatePatch ns = archiveStateFromList $ nsParents <> nsChildrenFixed
where where
...@@ -654,50 +267,37 @@ fixChildrenWithNoParentStatePatch ns = archiveStateFromList $ nsParents <> nsChi ...@@ -654,50 +267,37 @@ fixChildrenWithNoParentStatePatch ns = archiveStateFromList $ nsParents <> nsChi
fromDBNodeStoryEnv :: Pool PGS.Connection -> IO NodeStoryEnv fromDBNodeStoryEnv :: Pool PGS.Connection -> IO NodeStoryEnv
fromDBNodeStoryEnv pool = do fromDBNodeStoryEnv pool = do
tvar <- nodeStoryVar pool Nothing [] -- tvar <- nodeStoryVar pool Nothing []
let saver_immediate = do let saver_immediate nId a = do
ns <- atomically $ -- ns <- atomically $
readTVar tvar -- readTVar tvar
-- fix children so their 'list' is the same as their parents' -- -- fix children so their 'list' is the same as their parents'
>>= pure . fixChildrenTermTypes -- >>= pure . fixChildrenTermTypes
-- fix children that don't have a parent anymore -- -- fix children that don't have a parent anymore
>>= pure . fixChildrenWithNoParent -- >>= pure . fixChildrenWithNoParent
>>= writeTVar tvar -- >>= writeTVar tvar
>> readTVar tvar -- >> readTVar tvar
withResource pool $ \c -> do withResource pool $ \c -> do
--printDebug "[mkNodeStorySaver] will call writeNodeStories, ns" ns --printDebug "[mkNodeStorySaver] will call writeNodeStories, ns" ns
writeNodeStories c ns -- writeNodeStories c $ fixChildrenWithNoParent $ fixChildrenTermTypes ns
let archive_saver_immediate ns@(NodeStory nls) = withResource pool $ \c -> do upsertNodeStories c nId $
mapM_ (\(nId, a) -> do a & a_state %~ (fixChildrenInNgramsStatePatch . fixChildrenWithNoParentStatePatch)
let archive_saver_immediate nId a = withResource pool $ \c -> do
insertNodeArchiveHistory c nId (a ^. a_version) $ reverse $ a ^. a_history insertNodeArchiveHistory c nId (a ^. a_version) $ reverse $ a ^. a_history
) $ Map.toList nls pure $ a & a_history .~ []
pure $ clearHistory ns -- mapM_ (\(nId, a) -> do
-- insertNodeArchiveHistory c nId (a ^. a_version) $ reverse $ a ^. a_history
-- ) $ Map.toList nls
-- pure $ clearHistory ns
pure $ NodeStoryEnv { _nse_var = tvar pure $ NodeStoryEnv { _nse_saver_immediate = saver_immediate
, _nse_saver_immediate = saver_immediate
, _nse_archive_saver_immediate = archive_saver_immediate , _nse_archive_saver_immediate = archive_saver_immediate
, _nse_getter = nodeStoryVar pool (Just tvar) , _nse_getter = \nId -> withResource pool $ \c ->
getNodeStory' c nId
, _nse_getter_multi = \nIds -> withResource pool $ \c ->
foldM (\m nId -> nodeStoryInc c m nId) (NodeStory Map.empty) nIds
} }
nodeStoryVar :: Pool PGS.Connection
-> Maybe (TVar NodeListStory)
-> [NodeId]
-> IO (TVar NodeListStory)
nodeStoryVar pool Nothing nIds = do
state' <- withResource pool $ \c -> nodeStoryIncrementalRead c Nothing nIds
atomically $ newTVar state'
nodeStoryVar pool (Just tv) nIds = do
nls <- atomically $ readTVar tv
nls' <- withResource pool
$ \c -> nodeStoryIncrementalRead c (Just nls) nIds
_ <- atomically $ writeTVar tv nls'
pure tv
clearHistory :: NodeListStory -> NodeListStory
clearHistory (NodeStory ns) = NodeStory $ ns & (traverse . a_history) .~ emptyHistory
where
emptyHistory = [] :: [NgramsStatePatch']
currentVersion :: (HasNodeStory env err m) => ListId -> m Version currentVersion :: (HasNodeStory env err m) => ListId -> m Version
currentVersion listId = do currentVersion listId = do
pool <- view connPool pool <- view connPool
...@@ -748,3 +348,72 @@ fixNodeStoryVersions = do ...@@ -748,3 +348,72 @@ fixNodeStoryVersions = do
_ <- runPGSExecute c updateVerQuery (maxVersion, nId, ngramsType) _ <- runPGSExecute c updateVerQuery (maxVersion, nId, ngramsType)
pure () pure ()
_ -> panicTrace "Should get only 1 result!" _ -> panicTrace "Should get only 1 result!"
-----------------------------------------
-- DEPRECATED
-- nodeStoryVar :: Pool PGS.Connection
-- -> Maybe (TVar NodeListStory)
-- -> [NodeId]
-- -> IO (TVar NodeListStory)
-- nodeStoryVar pool Nothing nIds = do
-- state' <- withResource pool $ \c -> nodeStoryIncrementalRead c Nothing nIds
-- atomically $ newTVar state'
-- nodeStoryVar pool (Just tv) nIds = do
-- nls <- atomically $ readTVar tv
-- nls' <- withResource pool
-- $ \c -> nodeStoryIncrementalRead c (Just nls) nIds
-- _ <- atomically $ writeTVar tv nls'
-- pure tv
-- clearHistory :: NodeListStory -> NodeListStory
-- clearHistory (NodeStory ns) = NodeStory $ ns & (traverse . a_history) .~ emptyHistory
-- where
-- emptyHistory = [] :: [NgramsStatePatch']
-- fixChildrenWithNoParent :: NodeListStory -> NodeListStory
-- fixChildrenWithNoParent (NodeStory nls) =
-- NodeStory $ Map.fromList [ (nId, a & a_state %~ fixChildrenWithNoParentStatePatch)
-- | (nId, a) <- Map.toList nls ]
-- fixChildrenTermTypes :: NodeListStory -> NodeListStory
-- fixChildrenTermTypes (NodeStory nls) =
-- NodeStory $ Map.fromList [ (nId, a & a_state %~ fixChildrenInNgramsStatePatch)
-- | (nId, a) <- Map.toList nls ]
-- nodeStoryIncrementalRead :: PGS.Connection -> Maybe NodeListStory -> [NodeId] -> IO NodeListStory
-- nodeStoryIncrementalRead _ Nothing [] = pure $ NodeStory Map.empty
-- nodeStoryIncrementalRead c Nothing (ni:ns) = do
-- m <- getNodeStory c ni
-- nodeStoryIncrementalRead c (Just m) ns
-- nodeStoryIncrementalRead c (Just nls) ns = foldM (\m n -> nodeStoryInc c m n) nls ns
-- nodeStoryDec :: Pool PGS.Connection -> NodeListStory -> NodeId -> IO NodeListStory
-- nodeStoryDec pool ns@(NodeStory nls) ni = do
-- case Map.lookup ni nls of
-- Nothing -> do
-- _ <- nodeStoryRemove pool ni
-- pure ns
-- Just _ -> do
-- let ns' = Map.filterWithKey (\k _v -> k /= ni) nls
-- _ <- nodeStoryRemove pool ni
-- pure $ NodeStory ns'
------------------------------------
-- writeNodeStories :: PGS.Connection -> NodeListStory -> IO ()
-- writeNodeStories c (NodeStory nls) = do
-- mapM_ (\(nId, a) -> upsertNodeStories c nId a) $ Map.toList nls
-- nodeStoryRemove :: Pool PGS.Connection -> NodeId -> IO Int64
-- nodeStoryRemove pool (NodeId nId) = withResource pool $ \c -> runDelete c delete
-- where
-- delete = Delete { dTable = nodeStoryTable
-- , dWhere = (\row -> node_id row .== sqlInt4 nId)
-- , dReturning = rCount }
src/Gargantext/Core/NodeStory/DB.hs 0 → 100644
View file @ b423c47b
{-|
Module : Gargantext.Core.NodeStory.DB
Description : NodeStory DB functions
Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3
Maintainer : team@gargantext.org
Stability : experimental
Portability : POSIX
-}
{-# LANGUAGE Arrows #-}
{-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE QuasiQuotes #-}
{-# LANGUAGE TemplateHaskell #-}
module Gargantext.Core.NodeStory.DB
( nodeExists
, getNodesIdWithType
, getNodesArchiveHistory
, insertNodeArchiveHistory
, nodeStoriesQuery
, insertArchiveStateList
, deleteArchiveStateList
, updateArchiveStateList
, updateNodeStoryVersion )
where
import Control.Lens ((^.))
import Control.Monad.Except
import Data.HashMap.Strict (HashMap)
import Data.HashMap.Strict qualified as HashMap
import Data.Map.Strict qualified as Map
import Data.Map.Strict.Patch qualified as PM
import Data.Monoid
import Database.PostgreSQL.Simple qualified as PGS
import Database.PostgreSQL.Simple.SqlQQ (sql)
import Database.PostgreSQL.Simple.Types (Values(..), QualifiedIdentifier(..))
import Gargantext.API.Ngrams.Types
import Gargantext.Core (toDBid)
import Gargantext.Core.NodeStory.Types
import Gargantext.Core.Types (NodeId(..), NodeType)
import Gargantext.Database.Admin.Config ()
import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams
import Gargantext.Database.Schema.Ngrams (NgramsType)
import Gargantext.Prelude hiding (to)
import Gargantext.Prelude.Database
nodeExists :: PGS.Connection -> NodeId -> IO Bool
nodeExists c nId = (== [PGS.Only True])
<$> runPGSQuery c [sql| SELECT true FROM nodes WHERE id = ? LIMIT 1 |]
(PGS.Only nId)
getNodesIdWithType :: PGS.Connection -> NodeType -> IO [NodeId]
getNodesIdWithType c nt = do
ns <- runPGSQuery c query (PGS.Only $ toDBid nt)
pure $ map (\(PGS.Only nId) -> UnsafeMkNodeId nId) ns
where
query :: PGS.Query
query = [sql| SELECT id FROM nodes WHERE typename = ? |]
-- /!\ This function is using an hard coded parameter
-- which depends on the Ngrams List Flow
-- Version > 5 is hard coded because by default
-- first version of history of manual change is 6
getNodesArchiveHistory :: PGS.Connection
-> [NodeId]
-> IO [(NodeId, (Map NgramsType [HashMap NgramsTerm NgramsPatch]))]
getNodesArchiveHistory c nodesId = do
as <- runPGSQuery c query (PGS.Only $ Values fields nodesId)
:: IO [(Int, TableNgrams.NgramsType, NgramsTerm, NgramsPatch)]
pure $ map (\(nId, ngramsType, terms, patch)
-> ( UnsafeMkNodeId nId
, Map.singleton ngramsType [HashMap.singleton terms patch]
)
) as
where
fields = [QualifiedIdentifier Nothing "int4"]
query :: PGS.Query
query = [sql| WITH nodes_id(nid) as (?)
SELECT node_id, ngrams_type_id, terms, patch
FROM node_story_archive_history
JOIN ngrams ON ngrams.id = ngrams_id
JOIN nodes_id n ON node_id = n.nid
WHERE version > 5
ORDER BY (version, node_story_archive_history.id) DESC
|]
insertNodeArchiveHistory :: PGS.Connection -> NodeId -> Version -> [NgramsStatePatch'] -> IO ()
insertNodeArchiveHistory _ _ _ [] = pure ()
insertNodeArchiveHistory c nodeId version (h:hs) = do
let tuples = mconcat $ (\(nType, NgramsTablePatch patch) ->
(\(term, p) ->
(nodeId, nType, term, p)) <$> PM.toList patch) <$> PM.toList h :: [(NodeId, TableNgrams.NgramsType, NgramsTerm, NgramsPatch)]
tuplesM <- mapM (\(nId, nType, term, patch) -> do
[PGS.Only ngramsId] <- runPGSReturning c qInsert [PGS.Only term] :: IO [PGS.Only Int]
pure (nId, nType, ngramsId, term, patch)
) tuples :: IO [(NodeId, TableNgrams.NgramsType, Int, NgramsTerm, NgramsPatch)]
_ <- runPGSExecuteMany c query $ ((\(nId, nType, termId, _term, patch) -> (nId, nType, termId, patch, version)) <$> tuplesM)
_ <- insertNodeArchiveHistory c nodeId version hs
pure ()
where
qInsert :: PGS.Query
qInsert = [sql|INSERT INTO ngrams (terms) VALUES (?)
ON CONFLICT (terms) DO UPDATE SET terms = excluded.terms
RETURNING id|]
-- https://stackoverflow.com/questions/39224438/postgresql-insert-if-foreign-key-exists
query :: PGS.Query
query = [sql| INSERT INTO node_story_archive_history(node_id, ngrams_type_id, ngrams_id, patch, version)
VALUES (?, ?, ?, ?, ?)
|]
nodeStoriesQuery :: PGS.Query
nodeStoriesQuery = [sql| SELECT version, ngrams_type_id, terms, ngrams_repo_element
FROM node_stories
JOIN ngrams ON ngrams.id = ngrams_id
WHERE node_id = ?
|]
-- Archive
insertArchiveStateList :: PGS.Connection -> NodeId -> Version -> ArchiveStateList -> IO ()
insertArchiveStateList c nodeId version as = do
mapM_ performInsert as
where
performInsert (ngramsType, ngrams, ngramsRepoElement) = do
[PGS.Only ngramsId] <- tryInsertTerms ngrams
_ <- case ngramsRepoElement ^. nre_root of
Nothing -> pure []
Just r -> tryInsertTerms r
mapM_ tryInsertTerms $ ngramsRepoElement ^. nre_children
runPGSExecute c query (nodeId, ngramsId, version, ngramsType, ngramsRepoElement)
tryInsertTerms :: NgramsTerm -> IO [PGS.Only Int]
tryInsertTerms t = runPGSReturning c qInsert [PGS.Only t]
qInsert :: PGS.Query
qInsert = [sql|INSERT INTO ngrams (terms) VALUES (?)
ON CONFLICT (terms) DO UPDATE SET terms = excluded.terms
RETURNING id|]
query :: PGS.Query
query = [sql|INSERT INTO node_stories(node_id, ngrams_id, version, ngrams_type_id, ngrams_repo_element)
VALUES (?, ?, ?, ?, ? :: jsonb)
|]
deleteArchiveStateList :: PGS.Connection -> NodeId -> ArchiveStateList -> IO ()
deleteArchiveStateList c nodeId as = do
mapM_ (\(nt, n, _) -> runPGSExecute c query (nodeId, nt, n)) as
where
query :: PGS.Query
query = [sql| DELETE FROM node_stories
WHERE node_id = ? AND ngrams_type_id = ?
AND ngrams_id IN (SELECT id FROM ngrams WHERE terms = ?)
|]
updateArchiveStateList :: PGS.Connection -> NodeId -> Version -> ArchiveStateList -> IO ()
updateArchiveStateList c nodeId version as = do
let params = (\(nt, n, nre) -> (nre, version, nodeId, nt, n)) <$> as
mapM_ (runPGSExecute c query) params
where
query :: PGS.Query
query = [sql| UPDATE node_stories
SET ngrams_repo_element = ?, version = ?
WHERE node_id = ? AND ngrams_type_id = ?
AND ngrams_id IN (SELECT id FROM ngrams WHERE terms = ?)
|]
updateNodeStoryVersion :: PGS.Connection -> NodeId -> ArchiveList -> IO ()
updateNodeStoryVersion c nodeId newArchive = do
let ngramsTypes = Map.keys $ newArchive ^. a_state
mapM_ (\nt -> runPGSExecute c query (newArchive ^. a_version, nodeId, nt)) ngramsTypes
where
query :: PGS.Query
query = [sql|UPDATE node_stories
SET version = ?
WHERE node_id = ?
AND ngrams_type_id = ?|]
src/Gargantext/Core/NodeStory/Types.hs 0 → 100644
View file @ b423c47b
{-|
Module : Gargantext.Core.NodeStory.Types
Description : Node API generation
Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3
Maintainer : team@gargantext.org
Stability : experimental
Portability : POSIX
-}
{-# LANGUAGE Arrows #-}
{-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE QuasiQuotes #-}
{-# LANGUAGE TemplateHaskell #-}
module Gargantext.Core.NodeStory.Types
( HasNodeStory
, HasNodeStoryEnv
, hasNodeStory
, HasNodeStoryImmediateSaver
, hasNodeStoryImmediateSaver
, HasNodeArchiveStoryImmediateSaver
, hasNodeArchiveStoryImmediateSaver
, NodeStory(..)
, NgramsState'
, NgramsStatePatch'
, NodeListStory
, ArchiveList
, initNodeListStoryMock
, NodeStoryEnv(..)
, initNodeStory
, nse_getter
, nse_getter_multi
, nse_saver_immediate
, nse_archive_saver_immediate
-- , nse_var
, unNodeStory
, Archive(..)
, initArchive
, archiveAdvance
, unionArchives
, a_history
, a_state
, a_version
, combineState
, ArchiveStateSet
, ArchiveStateList )
where
import Codec.Serialise.Class
import Control.Lens (makeLenses, Getter, (^.))
import Control.Monad.Except
import Control.Monad.Reader
import Data.Aeson hiding ((.=), decode)
import Data.Map.Strict qualified as Map
import Data.Monoid
import Data.Profunctor.Product.TH (makeAdaptorAndInstance)
import Data.Semigroup
import Data.Set qualified as Set
import Database.PostgreSQL.Simple.FromField (FromField(fromField), fromJSONField)
import Gargantext.API.Ngrams.Types
import Gargantext.Core.Types (NodeId(..))
import Gargantext.Core.Utils.Prefix (unPrefix)
import Gargantext.Database.Admin.Config ()
import Gargantext.Database.Prelude (DbCmd')
import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams
import Gargantext.Database.Query.Table.Node.Error (HasNodeError())
import Gargantext.Prelude hiding (to)
import Opaleye (DefaultFromField(..), SqlJsonb, fromPGSFromField)
------------------------------------------------------------------------
{- | Node Story for each NodeType where the Key of the Map is NodeId
TODO : generalize for any NodeType, let's start with NodeList which
is implemented already
-}
newtype NodeStory s p = NodeStory { _unNodeStory :: Map NodeId (Archive s p) }
deriving (Generic, Show, Eq)
instance (FromJSON s, FromJSON p) => FromJSON (NodeStory s p)
instance (ToJSON s, ToJSON p) => ToJSON (NodeStory s p)
instance (Serialise s, Serialise p) => Serialise (NodeStory s p)
data Archive s p = Archive
{ _a_version :: !Version
, _a_state :: !s
, _a_history :: ![p]
-- first patch in the list is the most recent
-- We use `take` in `commitStatePatch`, that's why.
-- History is immutable, we just insert things on top of existing
-- list.
-- We don't need to store the whole history in memory, this
-- structure holds only recent history, the one that will be
-- inserted to the DB.
}
deriving (Generic, Show, Eq)
instance (Serialise s, Serialise p) => Serialise (Archive s p)
type NodeListStory = NodeStory NgramsState' NgramsStatePatch'
-- NOTE: 'type NgramsTableMap = Map NgramsTerm NgramsRepoElement'
type NgramsState' = Map TableNgrams.NgramsType NgramsTableMap
type NgramsStatePatch' = PatchMap TableNgrams.NgramsType NgramsTablePatch
-- instance Serialise NgramsStatePatch'
instance FromField (Archive NgramsState' NgramsStatePatch')
where
fromField = fromJSONField
instance DefaultFromField SqlJsonb (Archive NgramsState' NgramsStatePatch')
where
defaultFromField = fromPGSFromField
-- | Combine `NgramsState'`. This is because the structure is (Map
-- NgramsType (Map ...)) and the default `(<>)` operator is
-- left-biased
-- (https://hackage.haskell.org/package/containers-0.6.6/docs/Data-Map-Internal.html#v:union)
combineState :: NgramsState' -> NgramsState' -> NgramsState'
combineState = Map.unionWith (<>)
-- This is not a typical Semigroup instance. The state is not
-- appended, instead it is replaced with the second entry. This is
-- because state changes with each version. We have to take into
-- account the removal of terms as well.
-- instance (Semigroup s, Semigroup p) => Semigroup (Archive s p) where
-- (<>) (Archive { _a_history = p }) (Archive { _a_version = v'
-- , _a_state = s'
-- , _a_history = p' }) =
-- Archive { _a_version = v'
-- , _a_state = s'
-- , _a_history = p' <> p }
-- instance (Monoid s, Semigroup p) => Monoid (Archive s p) where
-- mempty = Archive { _a_version = 0
-- , _a_state = mempty
-- , _a_history = [] }
instance (FromJSON s, FromJSON p) => FromJSON (Archive s p) where
parseJSON = genericParseJSON $ unPrefix "_a_"
instance (ToJSON s, ToJSON p) => ToJSON (Archive s p) where
toJSON = genericToJSON $ unPrefix "_a_"
toEncoding = genericToEncoding $ unPrefix "_a_"
-- | This is the normal way to update archive state, bumping the
-- version and history. Resulting state is taken directly from new
-- archive, omitting old archive completely.
archiveAdvance :: (Semigroup s, Semigroup p) => Archive s p -> Archive s p -> Archive s p
archiveAdvance aOld aNew = aNew { _a_history = _a_history aNew <> _a_history aOld }
-- | This is to merge archive states.
unionArchives :: (Semigroup s, Semigroup p) => Archive s p -> Archive s p -> Archive s p
unionArchives aOld aNew = aNew { _a_state = _a_state aOld <> _a_state aNew
, _a_history = _a_history aNew <> _a_history aOld }
------------------------------------------------------------------------
initNodeStory :: (Monoid s, Semigroup p) => NodeId -> NodeStory s p
initNodeStory ni = NodeStory $ Map.singleton ni initArchive
initArchive :: (Monoid s, Semigroup p) => Archive s p
initArchive = Archive { _a_version = 0
, _a_state = mempty
, _a_history = [] }
initNodeListStoryMock :: NodeListStory
initNodeListStoryMock = NodeStory $ Map.singleton nodeListId archive
where
nodeListId = 0
archive = Archive { _a_version = 0
, _a_state = ngramsTableMap
, _a_history = [] }
ngramsTableMap = Map.singleton TableNgrams.NgramsTerms
$ Map.fromList
[ (n ^. ne_ngrams, ngramsElementToRepo n)
| n <- mockTable ^. _NgramsTable
]
----------------------------------------------------------------------
data NodeStoryPoly nid v ngtid ngid nre =
NodeStoryDB { node_id :: !nid
, version :: !v
, ngrams_type_id :: !ngtid
, ngrams_id :: !ngid
, ngrams_repo_element :: !nre }
deriving (Eq)
data NodeStoryArchivePoly nid a =
NodeStoryArchiveDB { a_node_id :: !nid
, archive :: !a }
deriving (Eq)
$(makeAdaptorAndInstance "pNodeStory" ''NodeStoryPoly)
$(makeAdaptorAndInstance "pNodeArchiveStory" ''NodeStoryArchivePoly)
-- type NodeStoryWrite = NodeStoryPoly (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryRead = NodeStoryPoly (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryArchiveWrite = NodeStoryArchivePoly (Column SqlInt4) (Column SqlJsonb)
-- type NodeStoryArchiveRead = NodeStoryArchivePoly (Column SqlInt4) (Column SqlJsonb)
type ArchiveList = Archive NgramsState' NgramsStatePatch'
------------------------------------------------------------------------
data NodeStoryEnv = NodeStoryEnv
{ _nse_saver_immediate :: !(NodeId -> ArchiveList -> IO ())
, _nse_archive_saver_immediate :: !(NodeId -> ArchiveList -> IO ArchiveList)
, _nse_getter :: !(NodeId -> IO ArchiveList)
, _nse_getter_multi :: !([NodeId] -> IO NodeListStory)
--, _nse_cleaner :: !(IO ()) -- every 12 hours: cleans the repos of unused NodeStories
-- , _nse_lock :: !FileLock -- TODO (it depends on the option: if with database or file only)
}
deriving (Generic)
type HasNodeStory env err m = ( DbCmd' env err m
, MonadReader env m
, MonadError err m
, HasNodeStoryEnv env
, HasNodeError err
)
class (HasNodeStoryImmediateSaver env)
=> HasNodeStoryEnv env where
hasNodeStory :: Getter env NodeStoryEnv
class HasNodeStoryImmediateSaver env where
hasNodeStoryImmediateSaver :: Getter env (NodeId -> ArchiveList -> IO ())
class HasNodeArchiveStoryImmediateSaver env where
hasNodeArchiveStoryImmediateSaver :: Getter env (NodeId -> ArchiveList -> IO ArchiveList)
type ArchiveStateList = [(TableNgrams.NgramsType, NgramsTerm, NgramsRepoElement)]
type ArchiveStateSet = Set.Set (TableNgrams.NgramsType, NgramsTerm)
------------------------------------------------------------------------
------------------------------------------------------------------------
-- | Lenses at the bottom of the file because Template Haskell would reorder order of execution in others cases
makeLenses ''NodeStoryEnv
makeLenses ''NodeStory
makeLenses ''Archive
src/Gargantext/Database/Action/Flow.hs
View file @ b423c47b
...@@ -15,8 +15,6 @@ Portability : POSIX ...@@ -15,8 +15,6 @@ Portability : POSIX
-- TODO-EVENTS: InsertedNodes -- TODO-EVENTS: InsertedNodes
-} -}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE ConstrainedClassMethods #-} {-# LANGUAGE ConstrainedClassMethods #-}
{-# LANGUAGE ConstraintKinds #-} {-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE InstanceSigs #-} {-# LANGUAGE InstanceSigs #-}
...@@ -41,7 +39,6 @@ module Gargantext.Database.Action.Flow -- (flowDatabase, ngrams2list) ...@@ -41,7 +39,6 @@ module Gargantext.Database.Action.Flow -- (flowDatabase, ngrams2list)
, addDocumentsToHyperCorpus , addDocumentsToHyperCorpus
, reIndexWith , reIndexWith
, docNgrams
, getOrMkRoot , getOrMkRoot
, getOrMk_RootWithCorpus , getOrMk_RootWithCorpus
...@@ -50,53 +47,44 @@ module Gargantext.Database.Action.Flow -- (flowDatabase, ngrams2list) ...@@ -50,53 +47,44 @@ module Gargantext.Database.Action.Flow -- (flowDatabase, ngrams2list)
, allDataOrigins , allDataOrigins
, do_api , do_api
, indexAllDocumentsWithPosTag
) )
where where
import Conduit import Conduit
import Control.Lens hiding (elements, Indexed) import Control.Lens hiding (elements, Indexed)
import Data.Aeson.TH (deriveJSON) import Data.Bifunctor qualified as B
import Data.Conduit qualified as C import Data.Conduit qualified as C
import Data.Conduit.Internal (zipSources) import Data.Conduit.Internal (zipSources)
import Data.Conduit.List qualified as CL import Data.Conduit.List qualified as CL
import Data.Conduit.List qualified as CList import Data.Conduit.List qualified as CList
import Data.HashMap.Strict qualified as HashMap import Data.HashMap.Strict qualified as HashMap
import Data.List qualified as List import Data.List qualified as List
import Data.Map.Strict (lookup)
import Data.Map.Strict qualified as Map import Data.Map.Strict qualified as Map
import Data.Proxy import Data.Proxy
import Data.Set qualified as Set import Data.Set qualified as Set
import Data.Swagger
import Data.Text qualified as T import Data.Text qualified as T
import EPO.API.Client.Types qualified as EPO import EPO.API.Client.Types qualified as EPO
import Gargantext.API.Ngrams.Tools (getTermsWith) import Gargantext.API.Ngrams.Tools (getTermsWith)
import Gargantext.API.Ngrams.Types qualified as NT import Gargantext.Core (Lang(..), NLPServerConfig)
import Gargantext.Core (Lang(..), PosTagAlgo(..), NLPServerConfig)
import Gargantext.Core (withDefaultLanguage) import Gargantext.Core (withDefaultLanguage)
import Gargantext.Core.Ext.IMTUser (readFile_Annuaire) import Gargantext.Core.Ext.IMTUser (readFile_Annuaire)
import Gargantext.Core.Flow.Types
import Gargantext.Core.NLP (HasNLPServer, nlpServerGet) import Gargantext.Core.NLP (HasNLPServer, nlpServerGet)
import Gargantext.Core.NodeStory (HasNodeStory) import Gargantext.Core.NodeStory (HasNodeStory)
import Gargantext.Core.Text
import Gargantext.Core.Text.Corpus.API qualified as API import Gargantext.Core.Text.Corpus.API qualified as API
import Gargantext.Core.Text.Corpus.Parsers (parseFile, FileFormat, FileType, splitOn) import Gargantext.Core.Text.Corpus.Parsers (parseFile, FileFormat, FileType)
import Gargantext.Core.Text.List (buildNgramsLists) import Gargantext.Core.Text.List (buildNgramsLists)
import Gargantext.Core.Text.List.Group.WithStem ({-StopSize(..),-} GroupParams(..)) import Gargantext.Core.Text.List.Group.WithStem ({-StopSize(..),-} GroupParams(..))
import Gargantext.Core.Text.List.Social (FlowSocialListWith(..)) import Gargantext.Core.Text.List.Social (FlowSocialListWith(..))
import Gargantext.Core.Text.Terms import Gargantext.Core.Text.Terms
import Gargantext.Core.Text.Terms.Mono.Stem.En (stemIt) import Gargantext.Core.Text.Terms.Mono.Stem.En (stemIt)
import Gargantext.Core.Text.Terms.WithList (MatchedText, buildPatternsWith, termsInText) import Gargantext.Core.Types (HasValidationError, TermsCount)
import Gargantext.Core.Types (HasValidationError, POS(NP), TermsCount)
import Gargantext.Core.Types.Individu (User(..)) import Gargantext.Core.Types.Individu (User(..))
import Gargantext.Core.Types.Main import Gargantext.Core.Types.Main
import Gargantext.Core.Types.Query (Limit) import Gargantext.Core.Types.Query (Limit)
import Gargantext.Core.Utils (addTuples) import Gargantext.Database.Action.Flow.Extract () -- ExtractNgramsT instances
import Gargantext.Core.Utils.Prefix (unPrefix, unPrefixSwagger)
import Gargantext.Data.HashMap.Strict.Utils qualified as HashMap
import Gargantext.Database.Action.Flow.List import Gargantext.Database.Action.Flow.List
import Gargantext.Database.Action.Flow.Utils (docNgrams, documentIdWithNgrams, insertDocNgrams, insertDocs, mapNodeIdNgrams)
import Gargantext.Database.Action.Flow.Types import Gargantext.Database.Action.Flow.Types
import Gargantext.Database.Action.Flow.Utils (insertDocNgrams, DocumentIdWithNgrams(..))
import Gargantext.Database.Action.Metrics (updateNgramsOccurrences, updateContextScore) import Gargantext.Database.Action.Metrics (updateNgramsOccurrences, updateContextScore)
import Gargantext.Database.Action.Search (searchDocInDatabase) import Gargantext.Database.Action.Search (searchDocInDatabase)
import Gargantext.Database.Admin.Config (userMaster, corpusMasterName) import Gargantext.Database.Admin.Config (userMaster, corpusMasterName)
...@@ -112,42 +100,23 @@ import Gargantext.Database.Query.Table.Node.Error (HasNodeError(..)) ...@@ -112,42 +100,23 @@ import Gargantext.Database.Query.Table.Node.Error (HasNodeError(..))
import Gargantext.Database.Query.Table.NodeContext (selectDocNodes) import Gargantext.Database.Query.Table.NodeContext (selectDocNodes)
import Gargantext.Database.Query.Table.NodeNgrams (listInsertDb , getCgramsId) import Gargantext.Database.Query.Table.NodeNgrams (listInsertDb , getCgramsId)
import Gargantext.Database.Query.Tree.Root (getOrMkRoot, getOrMk_RootWithCorpus) import Gargantext.Database.Query.Tree.Root (getOrMkRoot, getOrMk_RootWithCorpus)
import Gargantext.Database.Schema.Context
import Gargantext.Database.Schema.Node (NodePoly(..), node_id)
import Gargantext.Database.Schema.Node (node_hyperdata) import Gargantext.Database.Schema.Node (node_hyperdata)
import Gargantext.Database.Types
import Gargantext.Prelude hiding (to) import Gargantext.Prelude hiding (to)
import Gargantext.Prelude.Config (GargConfig(..)) import Gargantext.Prelude.Config (GargConfig(..))
import Gargantext.Prelude.Crypto.Hash (Hash)
import Gargantext.System.Logging import Gargantext.System.Logging
import Gargantext.Utils.Jobs (JobHandle, MonadJobStatus(..)) import Gargantext.Utils.Jobs (JobHandle, MonadJobStatus(..))
import PUBMED.Types qualified as PUBMED import PUBMED.Types qualified as PUBMED
import qualified Data.Bifunctor as B
------------------------------------------------------------------------ ------------------------------------------------------------------------
-- Imports for upgrade function -- Imports for upgrade function
import Gargantext.Database.Query.Tree.Root (getRootId) import Gargantext.Database.Query.Tree (HasTreeError)
import Gargantext.Database.Query.Tree (findNodesId, HasTreeError)
------------------------------------------------------------------------ ------------------------------------------------------------------------
-- TODO use internal with API name (could be old data)
data DataOrigin = InternalOrigin { _do_api :: API.ExternalAPIs }
| ExternalOrigin { _do_api :: API.ExternalAPIs }
-- TODO Web
deriving (Generic, Eq)
makeLenses ''DataOrigin
deriveJSON (unPrefix "_do_") ''DataOrigin
instance ToSchema DataOrigin where
declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_do_")
allDataOrigins :: [DataOrigin] allDataOrigins :: [DataOrigin]
allDataOrigins = map InternalOrigin API.externalAPIs <> map ExternalOrigin API.externalAPIs allDataOrigins = map InternalOrigin API.externalAPIs <> map ExternalOrigin API.externalAPIs
--------------- ---------------
data DataText = DataOld ![NodeId]
| DataNew !(Maybe Integer, ConduitT () HyperdataDocument IO ())
--- | DataNew ![[HyperdataDocument]]
-- Show instance is not possible because of IO -- Show instance is not possible because of IO
printDataText :: DataText -> IO () printDataText :: DataText -> IO ()
...@@ -384,35 +353,50 @@ flowCorpusUser :: ( HasNodeError err ...@@ -384,35 +353,50 @@ flowCorpusUser :: ( HasNodeError err
-> Maybe FlowSocialListWith -> Maybe FlowSocialListWith
-> m CorpusId -> m CorpusId
flowCorpusUser l user userCorpusId listId ctype mfslw = do flowCorpusUser l user userCorpusId listId ctype mfslw = do
server <- view (nlpServerGet l) buildSocialList l user userCorpusId listId ctype mfslw
-- _ <- insertOccsUpdates userCorpusId mastListId
--_ <- mkPhylo userCorpusId userId
-- Annuaire Flow
-- _ <- mkAnnuaire rootUserId userId
_ <- reIndexWith userCorpusId listId NgramsTerms (Set.singleton MapTerm)
_ <- updateContextScore userCorpusId listId
_ <- updateNgramsOccurrences userCorpusId listId
pure userCorpusId
buildSocialList :: ( HasNodeError err
, HasValidationError err
, HasNLPServer env
, HasTreeError err
, HasNodeStory env err m
, MkCorpus c
)
=> Lang
-> User
-> CorpusId
-> ListId
-> Maybe c
-> Maybe FlowSocialListWith
-> m ()
buildSocialList _l _user _userCorpusId _listId _ctype (Just (NoList _)) = pure ()
buildSocialList l user userCorpusId listId ctype mfslw = do
-- User List Flow -- User List Flow
(masterUserId, _masterRootId, masterCorpusId) (masterUserId, _masterRootId, masterCorpusId)
<- getOrMk_RootWithCorpus (UserName userMaster) (Left "") ctype <- getOrMk_RootWithCorpus (UserName userMaster) (Left "") ctype
nlpServer <- view (nlpServerGet l)
--let gp = (GroupParams l 2 3 (StopSize 3)) --let gp = (GroupParams l 2 3 (StopSize 3))
-- Here the PosTagAlgo should be chosen according to the Lang -- Here the PosTagAlgo should be chosen according to the Lang
_ <- case mfslw of
(Just (NoList _)) -> do
-- printDebug "Do not build list" mfslw
pure ()
_ -> do
ngs <- buildNgramsLists user userCorpusId masterCorpusId mfslw ngs <- buildNgramsLists user userCorpusId masterCorpusId mfslw
$ GroupWithPosTag l server HashMap.empty $ GroupWithPosTag l nlpServer HashMap.empty
-- printDebug "flowCorpusUser:ngs" ngs -- printDebug "flowCorpusUser:ngs" ngs
_userListId <- flowList_DbRepo listId ngs _userListId <- flowList_DbRepo listId ngs
_mastListId <- getOrMkList masterCorpusId masterUserId _mastListId <- getOrMkList masterCorpusId masterUserId
pure () pure ()
-- _ <- insertOccsUpdates userCorpusId mastListId
--_ <- mkPhylo userCorpusId userId
-- Annuaire Flow
-- _ <- mkAnnuaire rootUserId userId
_ <- reIndexWith userCorpusId listId NgramsTerms (Set.singleton MapTerm)
_ <- updateContextScore userCorpusId listId
_ <- updateNgramsOccurrences userCorpusId listId
pure userCorpusId
insertMasterDocs :: ( DbCmd' env err m insertMasterDocs :: ( DbCmd' env err m
...@@ -483,170 +467,6 @@ saveDocNgramsWith lId mapNgramsDocs' = do ...@@ -483,170 +467,6 @@ saveDocNgramsWith lId mapNgramsDocs' = do
------------------------------------------------------------------------ ------------------------------------------------------------------------
-- TODO Type NodeDocumentUnicised
insertDocs :: ( DbCmd' env err m
-- , FlowCorpus a
, FlowInsertDB a
, HasNodeError err
)
=> UserId
-> CorpusId
-> [a]
-> m ([ContextId], [Indexed ContextId a])
insertDocs uId cId hs = do
let docs = map addUniqId hs
newIds <- insertDb uId Nothing docs
-- printDebug "newIds" newIds
let
newIds' = map (nodeId2ContextId . reId) newIds
documentsWithId = mergeData (toInserted newIds) (Map.fromList $ map viewUniqId' docs)
_ <- Doc.add cId newIds'
pure (newIds', map (B.first nodeId2ContextId) documentsWithId)
------------------------------------------------------------------------
viewUniqId' :: UniqId a
=> a
-> (Hash, a)
viewUniqId' d = maybe err (\h -> (h,d)) (view uniqId d)
where
err = panicTrace "[ERROR] Database.Flow.toInsert"
toInserted :: [ReturnId]
-> Map Hash ReturnId
toInserted =
Map.fromList . map (\r -> (reUniqId r, r) )
. filter (\r -> reInserted r == True)
mergeData :: Map Hash ReturnId
-> Map Hash a
-> [Indexed NodeId a]
mergeData rs = catMaybes . map toDocumentWithId . Map.toList
where
toDocumentWithId (sha,hpd) =
Indexed <$> fmap reId (lookup sha rs)
<*> Just hpd
------------------------------------------------------------------------
------------------------------------------------------------------------
------------------------------------------------------------------------
documentIdWithNgrams :: HasNodeError err
=> (a
-> DBCmd err (HashMap.HashMap b (Map NgramsType Int, TermsCount)))
-> [Indexed NodeId a]
-> DBCmd err [DocumentIdWithNgrams a b]
documentIdWithNgrams f = traverse toDocumentIdWithNgrams
where
toDocumentIdWithNgrams d = do
e <- f $ _unIndex d
pure $ DocumentIdWithNgrams d e
-- | TODO check optimization
mapNodeIdNgrams :: (Ord b, Hashable b)
=> [DocumentIdWithNgrams a b]
-> HashMap.HashMap b
(Map NgramsType
(Map NodeId (Int, TermsCount))
)
mapNodeIdNgrams = HashMap.unionsWith (Map.unionWith (Map.unionWith addTuples)) . fmap f
where
-- | NOTE We are somehow multiplying 'TermsCount' here: If the
-- same ngrams term has different ngrams types, the 'TermsCount'
-- for it (which is the number of times the terms appears in a
-- document) is copied over to all its types.
f :: DocumentIdWithNgrams a b
-> HashMap.HashMap b (Map NgramsType (Map NodeId (Int, TermsCount)))
f d = fmap (\(ngramsTypeMap, cnt) -> fmap (\i -> Map.singleton nId (i, cnt)) ngramsTypeMap) $ documentNgrams d
where
nId = _index $ documentWithId d
------------------------------------------------------------------------
instance ExtractNgramsT HyperdataContact
where
extractNgramsT _ncs l hc = HashMap.mapKeys (cleanExtractedNgrams 255) <$> extract l hc
where
extract :: TermType Lang -> HyperdataContact
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extract _l hc' = do
let authors = map text2ngrams
$ maybe ["Nothing"] (\a -> [a])
$ view (hc_who . _Just . cw_lastName) hc'
pure $ HashMap.fromList $ [(SimpleNgrams a', (Map.singleton Authors 1, 1)) | a' <- authors ]
instance ExtractNgramsT HyperdataDocument
where
extractNgramsT :: NLPServerConfig
-> TermType Lang
-> HyperdataDocument
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extractNgramsT ncs lang hd = HashMap.mapKeys (cleanExtractedNgrams 255) <$> extractNgramsT' hd
where
extractNgramsT' :: HyperdataDocument
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extractNgramsT' doc = do
let source = text2ngrams
$ maybe "Nothing" identity
$ _hd_source doc
institutes = map text2ngrams
$ maybe ["Nothing"] (splitOn Institutes (doc^. hd_bdd))
$ _hd_institutes doc
authors = map text2ngrams
$ maybe ["Nothing"] (splitOn Authors (doc^. hd_bdd))
$ _hd_authors doc
termsWithCounts' <- map (\(t, cnt) -> (enrichedTerms (lang ^. tt_lang) CoreNLP NP t, cnt))
<$> concat
<$> liftBase (extractTerms ncs lang $ hasText doc)
pure $ HashMap.fromList
$ [(SimpleNgrams source, (Map.singleton Sources 1, 1)) ]
<> [(SimpleNgrams i', (Map.singleton Institutes 1, 1)) | i' <- institutes ]
<> [(SimpleNgrams a', (Map.singleton Authors 1, 1)) | a' <- authors ]
<> [(EnrichedNgrams t', (Map.singleton NgramsTerms 1, cnt')) | (t', cnt') <- termsWithCounts' ]
instance (ExtractNgramsT a, HasText a) => ExtractNgramsT (Node a)
where
extractNgramsT ncs l (Node { _node_hyperdata = h }) = extractNgramsT ncs l h
instance HasText a => HasText (Node a)
where
hasText (Node { _node_hyperdata = h }) = hasText h
-- | TODO putelsewhere
-- | Upgrade function
-- Suppose all documents are English (this is the case actually)
indexAllDocumentsWithPosTag :: ( HasNodeStory env err m
, HasNLPServer env )
=> m ()
indexAllDocumentsWithPosTag = do
rootId <- getRootId (UserName userMaster)
corpusIds <- findNodesId rootId [NodeCorpus]
docs <- List.concat <$> mapM getDocumentsWithParentId corpusIds
_ <- mapM extractInsert (splitEvery 1000 docs)
pure ()
extractInsert :: ( HasNodeStory env err m
, HasNLPServer env )
=> [Node HyperdataDocument] -> m ()
extractInsert docs = do
let documentsWithId = map (\doc -> Indexed (doc ^. node_id) doc) docs
let lang = EN
ncs <- view $ nlpServerGet lang
mapNgramsDocs' <- mapNodeIdNgrams
<$> documentIdWithNgrams
(extractNgramsT ncs $ withLang (Multi lang) documentsWithId)
documentsWithId
_ <- insertExtractedNgrams $ HashMap.keys mapNgramsDocs'
pure ()
...@@ -680,22 +500,3 @@ reIndexWith cId lId nt lts = do ...@@ -680,22 +500,3 @@ reIndexWith cId lId nt lts = do
-- Saving the indexation in database -- Saving the indexation in database
_ <- mapM (saveDocNgramsWith lId) ngramsByDoc _ <- mapM (saveDocNgramsWith lId) ngramsByDoc
pure () pure ()
docNgrams :: Lang
-> NgramsType
-> [NT.NgramsTerm]
-> Gargantext.Database.Admin.Types.Node.Context HyperdataDocument
-> [((MatchedText, TermsCount),
Map NgramsType (Map NodeId Int))]
docNgrams lang nt ts doc =
List.zip
(termsInText lang (buildPatternsWith lang ts)
$ T.unlines $ catMaybes
[ doc ^. context_hyperdata . hd_title
, doc ^. context_hyperdata . hd_abstract
]
)
(List.cycle [Map.fromList $ [(nt, Map.singleton (doc ^. context_id) 1 )]])
src/Gargantext/Database/Action/Flow/Extract.hs 0 → 100644
View file @ b423c47b
{-|
Module : Gargantext.Database.Flow.Extract
Description : Database Flow
Copyright : (c) CNRS, 2017-Present
License : AGPL + CECILL v3
Maintainer : team@gargantext.org
Stability : experimental
Portability : POSIX
-}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE InstanceSigs #-}
module Gargantext.Database.Action.Flow.Extract
where
import Control.Lens ((^.), _Just, view)
import Data.HashMap.Strict qualified as HashMap
import Data.Map.Strict qualified as DM
import Gargantext.Core (Lang, NLPServerConfig, PosTagAlgo(CoreNLP))
import Gargantext.Core.Text (HasText(..))
import Gargantext.Core.Text.Corpus.Parsers (splitOn)
import Gargantext.Core.Text.Terms (ExtractNgramsT, ExtractedNgrams(..), TermType, cleanExtractedNgrams, enrichedTerms, extractNgramsT, extractTerms, tt_lang)
import Gargantext.Core.Types (POS(NP), TermsCount)
import Gargantext.Database.Admin.Types.Hyperdata (HyperdataContact, HyperdataDocument, cw_lastName, hc_who, hd_authors, hd_bdd, hd_institutes, hd_source)
import Gargantext.Database.Admin.Types.Node
import Gargantext.Database.Prelude (DBCmd)
import Gargantext.Database.Schema.Ngrams
import Gargantext.Database.Schema.Node (NodePoly(..))
import Gargantext.Prelude
------------------------------------------------------------------------
instance ExtractNgramsT HyperdataContact
where
extractNgramsT _ncs l hc = HashMap.mapKeys (cleanExtractedNgrams 255) <$> extract l hc
where
extract :: TermType Lang -> HyperdataContact
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extract _l hc' = do
let authors = map text2ngrams
$ maybe ["Nothing"] (\a -> [a])
$ view (hc_who . _Just . cw_lastName) hc'
pure $ HashMap.fromList $ [(SimpleNgrams a', (DM.singleton Authors 1, 1)) | a' <- authors ]
instance ExtractNgramsT HyperdataDocument
where
extractNgramsT :: NLPServerConfig
-> TermType Lang
-> HyperdataDocument
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extractNgramsT ncs lang hd = HashMap.mapKeys (cleanExtractedNgrams 255) <$> extractNgramsT' hd
where
extractNgramsT' :: HyperdataDocument
-> DBCmd err (HashMap.HashMap ExtractedNgrams (Map NgramsType Int, TermsCount))
extractNgramsT' doc = do
let source = text2ngrams
$ maybe "Nothing" identity
$ doc ^. hd_source
institutes = map text2ngrams
$ maybe ["Nothing"] (splitOn Institutes (doc^. hd_bdd))
$ doc ^. hd_institutes
authors = map text2ngrams
$ maybe ["Nothing"] (splitOn Authors (doc^. hd_bdd))
$ doc ^. hd_authors
termsWithCounts' <- map (\(t, cnt) -> (enrichedTerms (lang ^. tt_lang) CoreNLP NP t, cnt))
<$> concat
<$> liftBase (extractTerms ncs lang $ hasText doc)
pure $ HashMap.fromList
$ [(SimpleNgrams source, (DM.singleton Sources 1, 1)) ]
<> [(SimpleNgrams i', (DM.singleton Institutes 1, 1)) | i' <- institutes ]
<> [(SimpleNgrams a', (DM.singleton Authors 1, 1)) | a' <- authors ]
<> [(EnrichedNgrams t', (DM.singleton NgramsTerms 1, cnt')) | (t', cnt') <- termsWithCounts' ]
instance (ExtractNgramsT a, HasText a) => ExtractNgramsT (Node a)
where
extractNgramsT ncs l (Node { _node_hyperdata = h }) = extractNgramsT ncs l h
instance HasText a => HasText (Node a)
where
hasText (Node { _node_hyperdata = h }) = hasText h
-- Apparently unused functions
-- extractInsert :: ( HasNodeStory env err m
-- , HasNLPServer env )
-- => [Node HyperdataDocument] -> m ()
-- extractInsert docs = do
-- let documentsWithId = map (\doc -> Indexed (doc ^. node_id) doc) docs
-- let lang = EN
-- ncs <- view $ nlpServerGet lang
-- mapNgramsDocs' <- mapNodeIdNgrams
-- <$> documentIdWithNgrams
-- (extractNgramsT ncs $ withLang (Multi lang) documentsWithId)
-- documentsWithId
-- _ <- insertExtractedNgrams $ HashMap.keys mapNgramsDocs'
-- pure ()
src/Gargantext/Database/Action/Flow/List.hs
View file @ b423c47b
...@@ -17,16 +17,16 @@ Portability : POSIX ...@@ -17,16 +17,16 @@ Portability : POSIX
module Gargantext.Database.Action.Flow.List module Gargantext.Database.Action.Flow.List
where where
import Control.Lens ((^.), (+~), (%~), at, (.~), _Just) import Control.Lens ((^.), (+~), (%~), at, (.~))
import Control.Monad.Reader import Control.Monad.Reader
import Data.List qualified as List import Data.List qualified as List
import Data.Map.Strict (toList) import Data.Map.Strict (toList)
import Data.Map.Strict qualified as Map import Data.Map.Strict qualified as Map
import Data.Map.Strict.Patch qualified as PM import Data.Map.Strict.Patch qualified as PM
import Gargantext.API.Ngrams (saveNodeStory) import Gargantext.API.Ngrams (saveNodeStory)
import Gargantext.API.Ngrams.Tools (getNodeStoryVar) import Gargantext.API.Ngrams.Tools (getNodeStory)
import Gargantext.API.Ngrams.Types import Gargantext.API.Ngrams.Types
import Gargantext.Core.NodeStory import Gargantext.Core.NodeStory (HasNodeStory, a_history, a_state, a_version)
import Gargantext.Core.Types (HasValidationError(..), assertValid) import Gargantext.Core.Types (HasValidationError(..), assertValid)
import Gargantext.Core.Types.Main (ListType(CandidateTerm)) import Gargantext.Core.Types.Main (ListType(CandidateTerm))
import Gargantext.Database.Admin.Types.Node import Gargantext.Database.Admin.Types.Node
...@@ -34,7 +34,6 @@ import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams ...@@ -34,7 +34,6 @@ import Gargantext.Database.Query.Table.Ngrams qualified as TableNgrams
import Gargantext.Database.Query.Table.NodeNgrams (NodeNgramsPoly(..), NodeNgramsW, listInsertDb,{- getCgramsId -}) import Gargantext.Database.Query.Table.NodeNgrams (NodeNgramsPoly(..), NodeNgramsW, listInsertDb,{- getCgramsId -})
import Gargantext.Database.Schema.Ngrams (NgramsType(..)) import Gargantext.Database.Schema.Ngrams (NgramsType(..))
import Gargantext.Prelude hiding (toList) import Gargantext.Prelude hiding (toList)
import GHC.Conc (readTVar, writeTVar)
-- FLOW LIST -- FLOW LIST
-- 1. select specific terms of the corpus when compared with others langs -- 1. select specific terms of the corpus when compared with others langs
...@@ -201,11 +200,14 @@ putListNgrams nodeId ngramsType nes = putListNgrams' nodeId ngramsType m ...@@ -201,11 +200,14 @@ putListNgrams nodeId ngramsType nes = putListNgrams' nodeId ngramsType m
-- The modifyMVar_ would test the patch with applicable first. -- The modifyMVar_ would test the patch with applicable first.
-- If valid the rest would be atomic and no merge is required. -- If valid the rest would be atomic and no merge is required.
-} -}
var <- getNodeStoryVar [listId] a <- getNodeStory listId
liftBase $ atomically $ do let a' = a & a_version +~ 1
r <- readTVar var & a_history %~ (p :)
writeTVar var $ & a_state . at ngramsType' .~ Just ns
r & unNodeStory . at listId . _Just . a_version +~ 1 -- liftBase $ atomically $ do
& unNodeStory . at listId . _Just . a_history %~ (p :) -- r <- readTVar var
& unNodeStory . at listId . _Just . a_state . at ngramsType' .~ Just ns -- writeTVar var $
saveNodeStory -- r & unNodeStory . at listId . _Just . a_version +~ 1
-- & unNodeStory . at listId . _Just . a_history %~ (p :)
-- & unNodeStory . at listId . _Just . a_state . at ngramsType' .~ Just ns
saveNodeStory listId a'
src/Gargantext/Database/Action/Flow/Types.hs
View file @ b423c47b
...@@ -9,29 +9,40 @@ Portability : POSIX ...@@ -9,29 +9,40 @@ Portability : POSIX
-} -}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE ConstraintKinds #-} {-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE ConstrainedClassMethods #-} {-# LANGUAGE ConstrainedClassMethods #-}
{-# LANGUAGE ConstraintKinds #-} {-# LANGUAGE ConstraintKinds #-}
{-# LANGUAGE InstanceSigs #-} {-# LANGUAGE InstanceSigs #-}
{-# LANGUAGE TemplateHaskell #-}
module Gargantext.Database.Action.Flow.Types module Gargantext.Database.Action.Flow.Types
where where
import Conduit (ConduitT)
import Control.Lens (makeLenses)
import Data.Aeson (ToJSON) import Data.Aeson (ToJSON)
import Data.Aeson.TH (deriveJSON)
import Gargantext.Core.Types (HasValidationError) import Data.HashMap.Strict (HashMap)
import Data.Swagger (ToSchema(..), genericDeclareNamedSchema)
import Gargantext.Core.Flow.Types import Gargantext.Core.Flow.Types
import Gargantext.Core.Text
import Gargantext.Core.NodeStory import Gargantext.Core.NodeStory
import Gargantext.Core.Text
import Gargantext.Core.Text.Corpus.API qualified as API
import Gargantext.Core.Text.Terms import Gargantext.Core.Text.Terms
import Gargantext.Database.Query.Table.Node.Error (HasNodeError) import Gargantext.Core.Types (HasValidationError, TermsCount)
import Gargantext.Core.Utils.Prefix (unPrefix, unPrefixSwagger)
import Gargantext.Database.Admin.Types.Hyperdata (HyperdataDocument)
import Gargantext.Database.Admin.Types.Node (NodeId)
import Gargantext.Database.Prelude (CmdM) import Gargantext.Database.Prelude (CmdM)
import Gargantext.Database.Query.Table.Node.Document.Insert import Gargantext.Database.Query.Table.Node.Document.Insert
import Gargantext.Database.Query.Table.Node.Error (HasNodeError)
import Gargantext.Database.Query.Tree.Error (HasTreeError) import Gargantext.Database.Query.Tree.Error (HasTreeError)
import Gargantext.Database.Schema.Ngrams (NgramsType(..))
import Gargantext.Database.Types (Indexed)
import Gargantext.Prelude
import Gargantext.System.Logging import Gargantext.System.Logging
type FlowCmdM env err m = type FlowCmdM env err m =
( CmdM env err m ( CmdM env err m
, HasNodeStory env err m , HasNodeStory env err m
...@@ -56,3 +67,27 @@ type FlowInsertDB a = ( AddUniqId a ...@@ -56,3 +67,27 @@ type FlowInsertDB a = ( AddUniqId a
, UniqParameters a , UniqParameters a
, InsertDb a , InsertDb a
) )
data DocumentIdWithNgrams a b =
DocumentIdWithNgrams
{ documentWithId :: Indexed NodeId a
, documentNgrams :: HashMap b (Map NgramsType Int, TermsCount)
} deriving (Show)
-- TODO use internal with API name (could be old data)
data DataOrigin = InternalOrigin { _do_api :: API.ExternalAPIs }
| ExternalOrigin { _do_api :: API.ExternalAPIs }
-- TODO Web
deriving (Generic, Eq)
makeLenses ''DataOrigin
deriveJSON (unPrefix "_do_") ''DataOrigin
instance ToSchema DataOrigin where
declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_do_")
data DataText = DataOld ![NodeId]
| DataNew !(Maybe Integer, ConduitT () HyperdataDocument IO ())
--- | DataNew ![[HyperdataDocument]]
src/Gargantext/Database/Action/Flow/Utils.hs
View file @ b423c47b
...@@ -9,30 +9,47 @@ Portability : POSIX ...@@ -9,30 +9,47 @@ Portability : POSIX
-} -}
{-# OPTIONS_GHC -fno-warn-orphans #-}
{-# LANGUAGE InstanceSigs #-}
module Gargantext.Database.Action.Flow.Utils module Gargantext.Database.Action.Flow.Utils
where ( docNgrams
, documentIdWithNgrams
, insertDocNgrams
, insertDocs
, mapNodeIdNgrams )
where
import Control.Lens ((^.)) import Control.Lens ((^.))
import Data.HashMap.Strict (HashMap) import Data.HashMap.Strict (HashMap)
import Data.HashMap.Strict qualified as HashMap import Data.HashMap.Strict qualified as HashMap
import Data.List qualified as List
import Data.Map.Strict qualified as DM import Data.Map.Strict qualified as DM
import Data.Text qualified as T
import Gargantext.API.Ngrams.Types qualified as NT
import Gargantext.Core (Lang, toDBid)
import Gargantext.Core.Flow.Types (UniqId, uniqId)
import Gargantext.Core.Text.Terms.WithList (MatchedText, buildPatternsWith, termsInText)
import Gargantext.Core.Types (TermsCount) import Gargantext.Core.Types (TermsCount)
import Gargantext.Core.Utils (addTuples)
import Gargantext.Data.HashMap.Strict.Utils qualified as HashMap
import Gargantext.Database.Action.Flow.Types (DocumentIdWithNgrams(..), FlowInsertDB)
import Gargantext.Database.Admin.Types.Hyperdata (HyperdataDocument, hd_abstract, hd_title)
import Gargantext.Database.Admin.Types.Node import Gargantext.Database.Admin.Types.Node
import Gargantext.Database.Prelude (DBCmd) import Gargantext.Database.Prelude (DBCmd, DbCmd')
import Gargantext.Database.Query.Table.ContextNodeNgrams import Gargantext.Database.Query.Table.ContextNodeNgrams
import Gargantext.Database.Query.Table.Node.Document.Add qualified as Doc (add)
import Gargantext.Database.Query.Table.Node.Document.Insert (ReturnId, addUniqId, insertDb, reId, reInserted, reUniqId)
import Gargantext.Database.Query.Table.Node.Error (HasNodeError(..))
import Gargantext.Database.Schema.Context (context_hyperdata, context_id)
import Gargantext.Database.Schema.Ngrams import Gargantext.Database.Schema.Ngrams
import Gargantext.Database.Types import Gargantext.Database.Types
import Gargantext.Prelude import Gargantext.Prelude
import Gargantext.Core (toDBid) import Gargantext.Prelude.Crypto.Hash (Hash)
data DocumentIdWithNgrams a b =
DocumentIdWithNgrams
{ documentWithId :: Indexed NodeId a
, documentNgrams :: HashMap b (Map NgramsType Int, TermsCount)
} deriving (Show)
insertDocNgrams :: ListId insertDocNgrams :: ListId
-> HashMap (Indexed NgramsId Ngrams) (Map NgramsType (Map DocId (Int, TermsCount))) -> HashMap (Indexed NgramsId Ngrams) (Map NgramsType (Map DocId (Int, TermsCount)))
-> DBCmd err Int -> DBCmd err Int
...@@ -52,3 +69,122 @@ insertDocNgrams lId m = do ...@@ -52,3 +69,122 @@ insertDocNgrams lId m = do
-- [(NodeId, {Ngrams: ({NgramsType: Int}, TermsCount)})] -- [(NodeId, {Ngrams: ({NgramsType: Int}, TermsCount)})]
-- {Ngrams: {NgramsType: {NodeId: (Int, TermsCount)}}} -- {Ngrams: {NgramsType: {NodeId: (Int, TermsCount)}}}
docNgrams :: Lang
-> NgramsType
-> [NT.NgramsTerm]
-> Gargantext.Database.Admin.Types.Node.Context HyperdataDocument
-> [((MatchedText, TermsCount),
Map NgramsType (Map NodeId Int))]
docNgrams lang nt ts doc =
List.zip
(termsInText lang (buildPatternsWith lang ts)
$ T.unlines $ catMaybes
[ doc ^. context_hyperdata . hd_title
, doc ^. context_hyperdata . hd_abstract
]
)
(List.cycle [DM.fromList $ [(nt, DM.singleton (doc ^. context_id) 1 )]])
documentIdWithNgrams :: HasNodeError err
=> (a
-> DBCmd err (HashMap.HashMap b (Map NgramsType Int, TermsCount)))
-> [Indexed NodeId a]
-> DBCmd err [DocumentIdWithNgrams a b]
documentIdWithNgrams f = traverse toDocumentIdWithNgrams
where
toDocumentIdWithNgrams d = do
e <- f $ _unIndex d
pure $ DocumentIdWithNgrams d e
-- | TODO check optimization
mapNodeIdNgrams :: (Ord b, Hashable b)
=> [DocumentIdWithNgrams a b]
-> HashMap.HashMap b
(Map NgramsType
(Map NodeId (Int, TermsCount))
)
mapNodeIdNgrams = HashMap.unionsWith (DM.unionWith (DM.unionWith addTuples)) . fmap f
where
-- | NOTE We are somehow multiplying 'TermsCount' here: If the
-- same ngrams term has different ngrams types, the 'TermsCount'
-- for it (which is the number of times the terms appears in a
-- document) is copied over to all its types.
f :: DocumentIdWithNgrams a b
-> HashMap.HashMap b (Map NgramsType (Map NodeId (Int, TermsCount)))
f d = fmap (\(ngramsTypeMap, cnt) -> fmap (\i -> DM.singleton nId (i, cnt)) ngramsTypeMap) $ documentNgrams d
where
nId = _index $ documentWithId d
-- TODO Type NodeDocumentUnicised
insertDocs :: ( DbCmd' env err m
-- , FlowCorpus a
, FlowInsertDB a
, HasNodeError err
)
=> UserId
-> CorpusId
-> [a]
-> m ([ContextId], [Indexed ContextId a])
insertDocs uId cId hs = do
let docs = map addUniqId hs
newIds <- insertDb uId Nothing docs
-- printDebug "newIds" newIds
let
newIds' = map (nodeId2ContextId . reId) newIds
documentsWithId = mergeData (toInserted newIds) (DM.fromList $ map viewUniqId' docs)
_ <- Doc.add cId newIds'
pure (newIds', map (first nodeId2ContextId) documentsWithId)
------------------------------------------------------------------------
viewUniqId' :: UniqId a
=> a
-> (Hash, a)
viewUniqId' d = maybe err (\h -> (h,d)) (d ^. uniqId)
where
err = panicTrace "[ERROR] Database.Flow.toInsert"
mergeData :: Map Hash ReturnId
-> Map Hash a
-> [Indexed NodeId a]
mergeData rs = catMaybes . map toDocumentWithId . DM.toList
where
toDocumentWithId (sha,hpd) =
Indexed <$> fmap reId (DM.lookup sha rs)
<*> Just hpd
toInserted :: [ReturnId]
-> Map Hash ReturnId
toInserted =
DM.fromList . map (\r -> (reUniqId r, r) )
. filter (\r -> reInserted r == True)
-- Apparently unused functions
-- | TODO putelsewhere
-- | Upgrade function
-- Suppose all documents are English (this is the case actually)
-- indexAllDocumentsWithPosTag :: ( HasNodeStory env err m
-- , HasNLPServer env )
-- => m ()
-- indexAllDocumentsWithPosTag = do
-- rootId <- getRootId (UserName userMaster)
-- corpusIds <- findNodesId rootId [NodeCorpus]
-- docs <- List.concat <$> mapM getDocumentsWithParentId corpusIds
-- _ <- mapM extractInsert (splitEvery 1000 docs)
-- pure ()
src/Gargantext/Database/Action/Metrics.hs
View file @ b423c47b
...@@ -30,7 +30,7 @@ import Database.PostgreSQL.Simple.Types (Values(..), QualifiedIdentifier(..)) ...@@ -30,7 +30,7 @@ import Database.PostgreSQL.Simple.Types (Values(..), QualifiedIdentifier(..))
import Gargantext.API.Ngrams.Tools (filterListWithRoot, groupNodesByNgrams, Diagonal(..), getCoocByNgrams, mapTermListRoot, RootTerm, getRepo) import Gargantext.API.Ngrams.Tools (filterListWithRoot, groupNodesByNgrams, Diagonal(..), getCoocByNgrams, mapTermListRoot, RootTerm, getRepo)
import Gargantext.API.Ngrams.Types (TabType(..), ngramsTypeFromTabType, NgramsTerm(..)) import Gargantext.API.Ngrams.Types (TabType(..), ngramsTypeFromTabType, NgramsTerm(..))
import Gargantext.Core (HasDBid(toDBid)) import Gargantext.Core (HasDBid(toDBid))
import Gargantext.Core.NodeStory hiding (runPGSQuery) import Gargantext.Core.NodeStory
import Gargantext.Core.Text.Metrics (scored, Scored(..), {-localMetrics, toScored-}) import Gargantext.Core.Text.Metrics (scored, Scored(..), {-localMetrics, toScored-})
import Gargantext.Core.Types (ListType(..), NodeType(..), ContextId, contextId2NodeId) import Gargantext.Core.Types (ListType(..), NodeType(..), ContextId, contextId2NodeId)
import Gargantext.Core.Types.Query (Limit(..)) import Gargantext.Core.Types.Query (Limit(..))
...@@ -74,7 +74,8 @@ getNgramsCooc cId lId tabType maybeLimit = do ...@@ -74,7 +74,8 @@ getNgramsCooc cId lId tabType maybeLimit = do
------------------------------------------------------------------------ ------------------------------------------------------------------------
------------------------------------------------------------------------ ------------------------------------------------------------------------
updateNgramsOccurrences :: (HasNodeStory env err m) updateNgramsOccurrences :: (HasNodeStory env err m)
=> CorpusId -> ListId => CorpusId
-> ListId
-> m () -> m ()
updateNgramsOccurrences cId lId = do updateNgramsOccurrences cId lId = do
_ <- mapM (updateNgramsOccurrences' cId lId Nothing) [Terms, Sources, Authors, Institutes] _ <- mapM (updateNgramsOccurrences' cId lId Nothing) [Terms, Sources, Authors, Institutes]
......
src/Gargantext/Database/Action/Search.hs
View file @ b423c47b
...@@ -95,7 +95,7 @@ searchDocInDatabase p t = runOpaQuery (queryDocInDatabase p t) ...@@ -95,7 +95,7 @@ searchDocInDatabase p t = runOpaQuery (queryDocInDatabase p t)
queryDocInDatabase :: ParentId -> Text -> O.Select (Column SqlInt4, Column SqlJsonb) queryDocInDatabase :: ParentId -> Text -> O.Select (Column SqlInt4, Column SqlJsonb)
queryDocInDatabase _p q = proc () -> do queryDocInDatabase _p q = proc () -> do
row <- queryNodeSearchTable -< () row <- queryNodeSearchTable -< ()
restrict -< (_ns_search row) @@ (sqlToTSQuery (unpack q)) restrict -< (_ns_search row) @@ (sqlPlainToTSQuery (unpack q))
restrict -< (_ns_typename row) .== (sqlInt4 $ toDBid NodeDocument) restrict -< (_ns_typename row) .== (sqlInt4 $ toDBid NodeDocument)
returnA -< (_ns_id row, _ns_hyperdata row) returnA -< (_ns_id row, _ns_hyperdata row)
......
stack.yaml
View file @ b423c47b
...@@ -71,10 +71,6 @@ ...@@ -71,10 +71,6 @@
git: "https://github.com/adinapoli/duckling.git" git: "https://github.com/adinapoli/duckling.git"
subdirs: subdirs:
- . - .
- commit: e9a29582ac66198dd2c2fdc3f8c8a4b1e6fbe004
git: "https://github.com/adinapoli/haskell-opaleye.git"
subdirs:
- .
- commit: 7533a9ccd3bfe77141745f6b61039a26aaf5c83b - commit: 7533a9ccd3bfe77141745f6b61039a26aaf5c83b
git: "https://github.com/adinapoli/llvm-hs.git" git: "https://github.com/adinapoli/llvm-hs.git"
subdirs: subdirs:
...@@ -119,6 +115,10 @@ ...@@ -119,6 +115,10 @@
git: "https://github.com/delanoe/patches-map" git: "https://github.com/delanoe/patches-map"
subdirs: subdirs:
- . - .
- commit: 6cf1bcfe215143efac17919cfd0abdd60e0f717c
git: "https://github.com/garganscript/haskell-opaleye.git"
subdirs:
- .
- commit: 4fd2edf30c141600ffad6d730cc4c1c08a6dbce4 - commit: 4fd2edf30c141600ffad6d730cc4c1c08a6dbce4
git: "https://github.com/robstewart57/rdf4h.git" git: "https://github.com/robstewart57/rdf4h.git"
subdirs: subdirs:
......
test/Test/Database/Operations.hs
View file @ b423c47b
...@@ -68,6 +68,7 @@ tests = sequential $ aroundAll withTestDB $ describe "Database" $ do ...@@ -68,6 +68,7 @@ tests = sequential $ aroundAll withTestDB $ describe "Database" $ do
it "Can perform search by author in documents" corpusSearch02 it "Can perform search by author in documents" corpusSearch02
it "Can perform more complex searches using the boolean API" corpusSearch03 it "Can perform more complex searches using the boolean API" corpusSearch03
it "Can correctly count doc score" corpusScore01 it "Can correctly count doc score" corpusScore01
it "Can perform search with spaces for doc in db" corpusSearchDB01
nodeStoryTests :: Spec nodeStoryTests :: Spec
nodeStoryTests = sequential $ nodeStoryTests = sequential $
......
test/Test/Database/Operations/DocumentSearch.hs
View file @ b423c47b
...@@ -208,3 +208,16 @@ corpusScore01 env = do ...@@ -208,3 +208,16 @@ corpusScore01 env = do
liftIO $ do liftIO $ do
map facetDoc_score results `shouldBe` [Just 0.0, Just 0.0] map facetDoc_score results `shouldBe` [Just 0.0, Just 0.0]
-- | Check that we support search with tsquery
corpusSearchDB01 :: TestEnv -> Assertion
corpusSearchDB01 env = do
flip runReaderT env $ runTestMonad $ do
parentId <- getRootId (UserName userMaster)
[corpus] <- getCorporaWithParentId parentId
results <- searchDocInDatabase (_node_id corpus) ("first second")
liftIO $ do
length results `shouldBe` 0 -- doesn't exist, we just check that proper to_tsquery is called
test/Test/Database/Operations/NodeStory.hs
View file @ b423c47b
...@@ -20,9 +20,9 @@ import Data.Map.Strict.Patch qualified as PM ...@@ -20,9 +20,9 @@ import Data.Map.Strict.Patch qualified as PM
import Data.Set qualified as Set import Data.Set qualified as Set
import Database.PostgreSQL.Simple qualified as PSQL import Database.PostgreSQL.Simple qualified as PSQL
import Database.PostgreSQL.Simple.SqlQQ import Database.PostgreSQL.Simple.SqlQQ
import Gargantext.API.Ngrams (commitStatePatch, mSetFromList, setListNgrams, saveNodeStoryImmediate) import Gargantext.API.Ngrams (commitStatePatch, mSetFromList, setListNgrams, saveNodeStory)
import Gargantext.API.Ngrams.Types (MSet(..), NgramsPatch(..), NgramsRepoElement(..), NgramsTerm(..), Versioned(..), mkNgramsTablePatch, nre_children, nre_list, nre_parent, nre_root) import Gargantext.API.Ngrams.Types (MSet(..), NgramsPatch(..), NgramsRepoElement(..), NgramsTerm(..), Versioned(..), mkNgramsTablePatch, nre_children, nre_list, nre_parent, nre_root)
import Gargantext.API.Ngrams.Tools (getNodeStoryVar) import Gargantext.API.Ngrams.Tools (getNodeStory)
import Gargantext.Core.NodeStory hiding (runPGSQuery) import Gargantext.Core.NodeStory hiding (runPGSQuery)
import Gargantext.Core.Types.Individu import Gargantext.Core.Types.Individu
import Gargantext.Core.Types (ListType(..), ListId, NodeId, UserId) import Gargantext.Core.Types (ListType(..), ListId, NodeId, UserId)
...@@ -35,13 +35,12 @@ import Gargantext.Database.Query.Tree.Root ...@@ -35,13 +35,12 @@ import Gargantext.Database.Query.Tree.Root
import Gargantext.Database.Schema.Ngrams (NgramsType(..)) import Gargantext.Database.Schema.Ngrams (NgramsType(..))
import Gargantext.Database.Schema.Node (NodePoly(..)) import Gargantext.Database.Schema.Node (NodePoly(..))
import Gargantext.Prelude import Gargantext.Prelude
import GHC.Conc (TVar, readTVar)
import Test.Database.Types import Test.Database.Types
import Test.Hspec.Expectations import Test.Hspec.Expectations
import Test.Tasty.HUnit import Test.Tasty.HUnit
commonInitialization :: TestMonad ( UserId, NodeId, ListId, TVar NodeListStory ) commonInitialization :: TestMonad ( UserId, NodeId, ListId, ArchiveList )
commonInitialization = do commonInitialization = do
let user = UserName userMaster let user = UserName userMaster
parentId <- getRootId user parentId <- getRootId user
...@@ -52,9 +51,9 @@ commonInitialization = do ...@@ -52,9 +51,9 @@ commonInitialization = do
listId <- getOrMkList corpusId userId listId <- getOrMkList corpusId userId
v <- getNodeStoryVar [listId] a <- getNodeStory listId
pure $ (userId, corpusId, listId, v) pure $ (userId, corpusId, listId, a)
initArchiveList :: ArchiveList initArchiveList :: ArchiveList
...@@ -90,7 +89,7 @@ simpleChildTerm = ( simpleChildTerm' ...@@ -90,7 +89,7 @@ simpleChildTerm = ( simpleChildTerm'
createListTest :: TestEnv -> Assertion createListTest :: TestEnv -> Assertion
createListTest env = do createListTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(userId, corpusId, listId, _v) <- commonInitialization (userId, corpusId, listId, _a) <- commonInitialization
listId' <- getOrMkList corpusId userId listId' <- getOrMkList corpusId userId
...@@ -100,28 +99,32 @@ createListTest env = do ...@@ -100,28 +99,32 @@ createListTest env = do
queryNodeStoryTest :: TestEnv -> Assertion queryNodeStoryTest :: TestEnv -> Assertion
queryNodeStoryTest env = do queryNodeStoryTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, a) <- commonInitialization
saveNodeStoryImmediate liftIO $ do
a `shouldBe` initArchiveList
saveNodeStory listId a
a' <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a' `shouldBe` a
ns `shouldBe` (NodeStory $ Map.singleton listId initArchiveList)
insertNewTermsToNodeStoryTest :: TestEnv -> Assertion insertNewTermsToNodeStoryTest :: TestEnv -> Assertion
insertNewTermsToNodeStoryTest env = do insertNewTermsToNodeStoryTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, _a) <- commonInitialization
let (terms, nre) = simpleTerm let (terms, nre) = simpleTerm
let nls = Map.singleton terms nre let nls = Map.singleton terms nre
setListNgrams listId NgramsTerms nls setListNgrams listId NgramsTerms nls
a <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nls })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nls }))
-- check that the ngrams are in the DB as well -- check that the ngrams are in the DB as well
ngramsMap <- selectNgramsId [unNgramsTerm terms] ngramsMap <- selectNgramsId [unNgramsTerm terms]
liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` [unNgramsTerm terms] liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` [unNgramsTerm terms]
...@@ -139,7 +142,7 @@ insertNewTermsToNodeStoryTest env = do ...@@ -139,7 +142,7 @@ insertNewTermsToNodeStoryTest env = do
insertNewTermsWithChildrenToNodeStoryTest :: TestEnv -> Assertion insertNewTermsWithChildrenToNodeStoryTest :: TestEnv -> Assertion
insertNewTermsWithChildrenToNodeStoryTest env = do insertNewTermsWithChildrenToNodeStoryTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, _a) <- commonInitialization
let (tParent, nreParent) = simpleParentTerm let (tParent, nreParent) = simpleParentTerm
let (tChild, nreChild) = simpleChildTerm let (tChild, nreChild) = simpleChildTerm
...@@ -148,10 +151,10 @@ insertNewTermsWithChildrenToNodeStoryTest env = do ...@@ -148,10 +151,10 @@ insertNewTermsWithChildrenToNodeStoryTest env = do
let nls = Map.fromList [(tParent, nreParent), (tChild, nreChild)] let nls = Map.fromList [(tParent, nreParent), (tChild, nreChild)]
setListNgrams listId NgramsTerms nls setListNgrams listId NgramsTerms nls
a <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nls })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nls }))
-- `setListNgrams` calls saveNodeStory already so we should have -- `setListNgrams` calls saveNodeStory already so we should have
-- the terms in the DB by now -- the terms in the DB by now
...@@ -178,7 +181,7 @@ insertNewTermsWithChildrenToNodeStoryTest env = do ...@@ -178,7 +181,7 @@ insertNewTermsWithChildrenToNodeStoryTest env = do
insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest :: TestEnv -> Assertion insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest :: TestEnv -> Assertion
insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, _a) <- commonInitialization
let (tParent, nreParent) = simpleParentTerm let (tParent, nreParent) = simpleParentTerm
let (tChild, nreChildGoodType) = simpleChildTerm let (tChild, nreChildGoodType) = simpleChildTerm
...@@ -190,10 +193,10 @@ insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do ...@@ -190,10 +193,10 @@ insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do
setListNgrams listId NgramsTerms nls setListNgrams listId NgramsTerms nls
a <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nlsWithChildFixed })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nlsWithChildFixed }))
ngramsMap <- selectNgramsId terms ngramsMap <- selectNgramsId terms
liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` terms liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` terms
...@@ -216,16 +219,16 @@ insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do ...@@ -216,16 +219,16 @@ insertNodeStoryChildrenWithDifferentNgramsTypeThanParentTest env = do
setListNgramsUpdatesNodeStoryTest :: TestEnv -> Assertion setListNgramsUpdatesNodeStoryTest :: TestEnv -> Assertion
setListNgramsUpdatesNodeStoryTest env = do setListNgramsUpdatesNodeStoryTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, _a) <- commonInitialization
let (terms, nre) = simpleTerm let (terms, nre) = simpleTerm
let nls = Map.singleton terms nre let nls = Map.singleton terms nre
setListNgrams listId NgramsTerms nls setListNgrams listId NgramsTerms nls
a <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nls })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nls }))
-- check that the ngrams are in the DB as well -- check that the ngrams are in the DB as well
ngramsMap <- selectNgramsId [unNgramsTerm terms] ngramsMap <- selectNgramsId [unNgramsTerm terms]
liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` [unNgramsTerm terms] liftIO $ (snd <$> Map.toList ngramsMap) `shouldBe` [unNgramsTerm terms]
...@@ -239,26 +242,26 @@ setListNgramsUpdatesNodeStoryTest env = do ...@@ -239,26 +242,26 @@ setListNgramsUpdatesNodeStoryTest env = do
let nls2 = Map.singleton (NgramsTerm terms2) nre2 let nls2 = Map.singleton (NgramsTerm terms2) nre2
setListNgrams listId NgramsTerms nls2 setListNgrams listId NgramsTerms nls2
a' <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a' `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms $ nls <> nls2 })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms $ nls <> nls2 }))
setListNgramsUpdatesNodeStoryWithChildrenTest :: TestEnv -> Assertion setListNgramsUpdatesNodeStoryWithChildrenTest :: TestEnv -> Assertion
setListNgramsUpdatesNodeStoryWithChildrenTest env = do setListNgramsUpdatesNodeStoryWithChildrenTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, _a) <- commonInitialization
let (tChild, nreChild) = simpleChildTerm let (tChild, nreChild) = simpleChildTerm
let (tParent, nreParent) = simpleParentTerm let (tParent, nreParent) = simpleParentTerm
let nls = Map.fromList [(tParent, nreParent), (tChild, nreChild)] let nls = Map.fromList [(tParent, nreParent), (tChild, nreChild)]
setListNgrams listId NgramsTerms nls setListNgrams listId NgramsTerms nls
a <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nls })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nls }))
-- OK, now we substitute parent with no children, the parent of -- OK, now we substitute parent with no children, the parent of
-- 'nreChild' should become Nothing -- 'nreChild' should become Nothing
...@@ -270,22 +273,20 @@ setListNgramsUpdatesNodeStoryWithChildrenTest env = do ...@@ -270,22 +273,20 @@ setListNgramsUpdatesNodeStoryWithChildrenTest env = do
, _nre_root = Nothing } , _nre_root = Nothing }
let nlsNew = Map.fromList [(tParent, nreParentNew), (tChild, nreChildNew)] let nlsNew = Map.fromList [(tParent, nreParentNew), (tChild, nreChildNew)]
a' <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a' `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nlsNew })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.singleton NgramsTerms nlsNew }))
commitPatchSimpleTest :: TestEnv -> Assertion commitPatchSimpleTest :: TestEnv -> Assertion
commitPatchSimpleTest env = do commitPatchSimpleTest env = do
flip runReaderT env $ runTestMonad $ do flip runReaderT env $ runTestMonad $ do
(_userId, _corpusId, listId, v) <- commonInitialization (_userId, _corpusId, listId, a) <- commonInitialization
-- initially, the node story table is empty -- initially, the node story table is empty
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a `shouldBe` (initArchiveList { _a_state = Map.empty })
ns `shouldBe` (NodeStory $ Map.singleton listId
(initArchiveList { _a_state = Map.empty }))
let (term, nre) = simpleTerm let (term, nre) = simpleTerm
let tPatch = NgramsReplace { _patch_old = Nothing let tPatch = NgramsReplace { _patch_old = Nothing
...@@ -299,8 +300,8 @@ commitPatchSimpleTest env = do ...@@ -299,8 +300,8 @@ commitPatchSimpleTest env = do
let nls = Map.fromList [(term, nre)] let nls = Map.fromList [(term, nre)]
a' <- getNodeStory listId
liftIO $ do liftIO $ do
ns <- atomically $ readTVar v a' `shouldBe` (initArchiveList { _a_state = Map.singleton NgramsTerms nls
ns `shouldBe` (NodeStory $ Map.singleton listId , _a_version = ver + 1 })
(initArchiveList { _a_state = Map.singleton NgramsTerms nls
, _a_version = ver + 1 }))
test/Test/Database/Types.hs
View file @ b423c47b
...@@ -115,10 +115,6 @@ instance HasMail TestEnv where ...@@ -115,10 +115,6 @@ instance HasMail TestEnv where
instance HasNodeStoryEnv TestEnv where instance HasNodeStoryEnv TestEnv where
hasNodeStory = to test_nodeStory hasNodeStory = to test_nodeStory
instance HasNodeStoryVar TestEnv where
hasNodeStoryVar = hasNodeStory . nse_getter
instance HasNodeStoryImmediateSaver TestEnv where instance HasNodeStoryImmediateSaver TestEnv where
hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate hasNodeStoryImmediateSaver = hasNodeStory . nse_saver_immediate
......
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