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haskell-gargantext
haskell-gargantext
Commit d3dbcd9b authored by Przemyslaw Kaminski's avatar Przemyslaw Kaminski Committed by Alexandre Delanoë
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[phylo] some small phyloexport refactoring

parent e8c7bfa3
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Showing with 31 additions and 30 deletions
src/Gargantext/Core/Viz/Phylo/API/Tools.hs
View file @ d3dbcd9b
......@@ -78,7 +78,6 @@ phylo2dot2json phylo = do
-- parsing a file can be done with:
-- runParser' (Data.GraphViz.Parsing.parse :: Parse (Data.GraphViz.DotGraph Text)) $ TL.fromStrict f
Shell.callProcess "dot" ["-Tdot", "-o", fileDot, fileFrom]
Shell.callProcess "dot" ["-Txdot_json", "-o", fileToJson, fileDot]
......
src/Gargantext/Core/Viz/Phylo/PhyloExport.hs
View file @ d3dbcd9b
......@@ -28,6 +28,7 @@ import Gargantext.Core.Viz.Phylo.PhyloTools
import Gargantext.Core.Viz.Phylo.TemporalMatching (filterDocs, filterDiago, reduceDiagos, toSimilarity, getNextPeriods)
import Gargantext.Prelude hiding (scale)
import Prelude (writeFile)
import Protolude (floor)
import System.FilePath
import qualified Data.GraphViz.Attributes.HTML as H
import qualified Data.Text as Text
......@@ -44,18 +45,18 @@ dotToFile filePath dotG = writeFile filePath $ dotToString dotG
dotToString :: DotGraph DotId -> [Char]
dotToString dotG = unpack (printDotGraph dotG)
dynamicToColor :: Double -> H.Attribute
dynamicToColor :: Int -> H.Attribute
dynamicToColor d
| d == 0 = H.BGColor (toColor LightCoral)
| d == 1 = H.BGColor (toColor Khaki)
| d == 2 = H.BGColor (toColor SkyBlue)
| otherwise = H.Color (toColor Black)
pickLabelColor :: [Double] -> H.Attribute
pickLabelColor :: [Int] -> H.Attribute
pickLabelColor lst
| elem 0 lst = dynamicToColor 0
| elem 2 lst = dynamicToColor 2
| elem 1 lst = dynamicToColor 1
| elem 2 lst = dynamicToColor 2
| otherwise = dynamicToColor 3
toDotLabel :: Text.Text -> Label
......@@ -88,20 +89,21 @@ groupToTable fdt g = H.Table H.HTable
$ zip ((g ^. phylo_groupMeta) ! "dynamics") ((g ^. phylo_groupMeta) ! "inclusion"))}
where
--------------------------------------
ngramsToRow :: [(Ngrams,(Double,Double))] -> H.Row
ngramsToRow :: [(Ngrams, (Double, Double))] -> H.Row
ngramsToRow ns = H.Cells $ map (\(n,(d,_)) ->
H.LabelCell [H.Align H.HLeft,dynamicToColor d] $ H.Text [H.Str $ fromStrict n]) ns
H.LabelCell [ H.Align H.HLeft
, dynamicToColor $ floor d] $ H.Text [H.Str $ fromStrict n]) ns
--------------------------------------
header :: H.Row
header =
H.Cells [ H.LabelCell [pickLabelColor ((g ^. phylo_groupMeta) ! "dynamics")]
$ H.Text [H.Str $ (((fromStrict . Text.toUpper) $ g ^. phylo_groupLabel)
<> (fromStrict " ( ")
H.Cells [ H.LabelCell [pickLabelColor $ floor <$> ((g ^. phylo_groupMeta) ! "dynamics")]
$ H.Text [H.Str $ ((fromStrict . Text.toUpper) $ g ^. phylo_groupLabel)
<> fromStrict " ( "
<> (pack $ show (fst $ g ^. phylo_groupPeriod))
<> (fromStrict " , ")
<> fromStrict " , "
<> (pack $ show (snd $ g ^. phylo_groupPeriod))
<> (fromStrict " ) ")
<> (pack $ show (getGroupId g)))]]
<> fromStrict " ) "
<> (pack $ show (getGroupId g))]]
--------------------------------------
branchToDotNode :: PhyloBranch -> Int -> Dot DotId
......@@ -112,8 +114,8 @@ branchToDotNode b bId =
<> [ toAttr "nodeType" "branch"
, toAttr "bId" (pack $ show bId)
, toAttr "branchId" (pack $ unwords (map show $ snd $ b ^. branch_id))
, toAttr "branch_x" (fromStrict $ Text.pack $ (show $ b ^. branch_x))
, toAttr "branch_y" (fromStrict $ Text.pack $ (show $ b ^. branch_y))
, toAttr "branch_x" (fromStrict $ Text.pack $ show $ b ^. branch_x)
, toAttr "branch_y" (fromStrict $ Text.pack $ show $ b ^. branch_y)
, toAttr "label" (pack $ show $ b ^. branch_label)
])
......@@ -201,29 +203,29 @@ exportToDot :: Phylo -> PhyloExport -> DotGraph DotId
exportToDot phylo export =
trace ("\n-- | Convert " <> show(length $ export ^. export_branches) <> " branches and "
<> show(length $ export ^. export_groups) <> " groups "
<> show(length $ nub $ concat $ map (\g -> g ^. phylo_groupNgrams) $ export ^. export_groups) <> " terms to a dot file\n\n"
<> show(length $ nub $ concat $ map (^. phylo_groupNgrams) $ export ^. export_groups) <> " terms to a dot file\n\n"
<> "##########################") $
digraph ((Str . fromStrict) $ (phyloName $ getConfig phylo)) $ do
digraph ((Str . fromStrict) $ phyloName $ getConfig phylo) $ do
{- 1) init the dot graph -}
graphAttrs ( [ Label (toDotLabel $ (phyloName $ getConfig phylo))]
graphAttrs ( [ Label (toDotLabel $ phyloName $ getConfig phylo)]
<> [ FontSize 30, LabelLoc VTop, NodeSep 1, RankSep [1], Rank SameRank, Splines SplineEdges, Overlap ScaleOverlaps
, Ratio FillRatio
-- , Ratio AutoRatio
, Style [SItem Filled []],Color [toWColor White]]
{-- home made attributes -}
<> [(toAttr (fromStrict "phyloFoundations") $ pack $ show (length $ Vector.toList $ getRoots phylo))
,(toAttr (fromStrict "phyloTerms") $ pack $ show (length $ nub $ concat $ map (\g -> g ^. phylo_groupNgrams) $ export ^. export_groups))
,(toAttr (fromStrict "phyloDocs") $ pack $ show (sum $ elems $ getDocsByDate phylo))
,(toAttr (fromStrict "phyloPeriods") $ pack $ show (length $ elems $ phylo ^. phylo_periods))
,(toAttr (fromStrict "phyloBranches") $ pack $ show (length $ export ^. export_branches))
,(toAttr (fromStrict "phyloGroups") $ pack $ show (length $ export ^. export_groups))
,(toAttr (fromStrict "phyloSources") $ pack $ show (Vector.toList $ getSources phylo))
,(toAttr (fromStrict "phyloTimeScale") $ pack $ getTimeScale phylo)
,(toAttr (fromStrict "PhyloScale") $ pack $ show (getLevel phylo))
,(toAttr (fromStrict "phyloQuality") $ pack $ show (phylo ^. phylo_quality))
,(toAttr (fromStrict "phyloSeaRiseStart") $ pack $ show (getPhyloSeaRiseStart phylo))
,(toAttr (fromStrict "phyloSeaRiseSteps") $ pack $ show (getPhyloSeaRiseSteps phylo))
<> [ toAttr (fromStrict "phyloFoundations") $ pack $ show (length $ Vector.toList $ getRoots phylo)
, toAttr (fromStrict "phyloTerms") $ pack $ show (length $ nub $ concat $ map (^. phylo_groupNgrams) $ export ^. export_groups)
, toAttr (fromStrict "phyloDocs") $ pack $ show (sum $ elems $ getDocsByDate phylo)
, toAttr (fromStrict "phyloPeriods") $ pack $ show (length $ elems $ phylo ^. phylo_periods)
, toAttr (fromStrict "phyloBranches") $ pack $ show (length $ export ^. export_branches)
, toAttr (fromStrict "phyloGroups") $ pack $ show (length $ export ^. export_groups)
, toAttr (fromStrict "phyloSources") $ pack $ show (Vector.toList $ getSources phylo)
, toAttr (fromStrict "phyloTimeScale") $ pack $ getTimeScale phylo
, toAttr (fromStrict "PhyloScale") $ pack $ show (getLevel phylo)
, toAttr (fromStrict "phyloQuality") $ pack $ show (phylo ^. phylo_quality)
, toAttr (fromStrict "phyloSeaRiseStart") $ pack $ show (getPhyloSeaRiseStart phylo)
, toAttr (fromStrict "phyloSeaRiseSteps") $ pack $ show (getPhyloSeaRiseSteps phylo)
-- ,(toAttr (fromStrict "phyloTermsFreq") $ pack $ show (toList $ _phylo_lastTermFreq phylo))
])
......@@ -462,7 +464,7 @@ idf n groups = log ((fromIntegral $ length groups) / (fromIntegral $ nk n groups
findTfIdf :: [[Int]] -> [(Int,Double)]
findTfIdf groups = reverse $ sortOn snd $ map (\n -> (n,(tf n groups) * (idf n groups))) $ sort $ nub $ concat groups
findTfIdf groups = reverse $ sortOn snd $ map (\n -> (n,(tf n groups) * (idf n groups))) $ nub $ concat groups
findEmergences :: [PhyloGroup] -> Map Int Double -> [(Int,Double)]
......
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