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purescript-gargantext
Commit 6963af35 authored by Przemyslaw Kaminski's avatar Przemyslaw Kaminski
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[graph] force atlas flickering fix

parent b2e22224
Pipeline #1590 failed with stage
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    Showing with 131 additions and 121 deletions
    src/Gargantext/Components/Graph.purs
    View file @ 6963af35
    ......@@ -54,14 +54,9 @@ graph = R.createElement graphCpt
    graphCpt :: forall s fa2. R.Component (Props s fa2)
    graphCpt = here.component "graph" cpt where
    cpt props@{ elRef
    , mCamera
    , multiSelectEnabledRef
    , selectedNodeIds
    , showEdges
    , sigmaRef
    , stage
    , startForceAtlas
    , transformedGraph } _ = do
    , stage } _ = do
    showEdges' <- T.useLive T.unequal showEdges
    stage' <- T.useLive T.unequal stage
    ......@@ -83,8 +78,16 @@ graphCpt = here.component "graph" cpt where
    Nothing -> RH.div {} []
    Just el -> R.createPortal [] el
    stageHooks props@{ elRef, mCamera, multiSelectEnabledRef, selectedNodeIds, forceAtlas2Settings: fa2, graph: graph'
    , sigmaRef, stage, stage': Init, startForceAtlas } = do
    stageHooks { elRef
    , mCamera
    , multiSelectEnabledRef
    , selectedNodeIds
    , forceAtlas2Settings: fa2
    , graph: graph'
    , sigmaRef
    , stage
    , stage': Init
    , startForceAtlas } = do
    R.useEffectOnce' $ do
    let rSigma = R.readRef sigmaRef
    ......@@ -126,7 +129,7 @@ graphCpt = here.component "graph" cpt where
    Sigma.updateCamera sig { ratio, x, y }
    pure unit
    Just sig -> do
    Just _sig -> do
    pure unit
    T.write Ready stage
    ......@@ -145,7 +148,9 @@ graphCpt = here.component "graph" cpt where
    Sigmax.performDiff sigma transformedGraph
    Sigmax.updateEdges sigma tEdgesMap
    Sigmax.updateNodes sigma tNodesMap
    Sigmax.setEdges sigma (not $ SigmaxTypes.edgeStateHidden showEdges')
    let edgesState = not $ SigmaxTypes.edgeStateHidden showEdges'
    here.log2 "[graphCpt] edgesState" edgesState
    Sigmax.setEdges sigma edgesState
    stageHooks _ = pure unit
    ......@@ -300,13 +305,15 @@ sigmaSettings =
    , zoomMin : 0.0
    , zoomingRatio : 1.4
    }
    type ForceAtlas2Settings =
    ( adjustSizes :: Boolean
    , barnesHutOptimize :: Boolean
    -- , barnesHutTheta :: Number
    , batchEdgesDrawing :: Boolean
    , edgeWeightInfluence :: Number
    -- , fixedY :: Boolean
    , hideEdgesOnMove :: Boolean
    , gravity :: Number
    , includeHiddenEdges :: Boolean
    , includeHiddenNodes :: Boolean
    ......@@ -324,19 +331,21 @@ type ForceAtlas2Settings =
    forceAtlas2Settings :: {|ForceAtlas2Settings}
    forceAtlas2Settings =
    { adjustSizes : true
    , barnesHutOptimize : true
    , edgeWeightInfluence : 1.0
    -- fixedY : false
    , gravity : 0.01
    , includeHiddenEdges: false
    , includeHiddenNodes: true
    , iterationsPerRender : 50.0 -- 10.0
    , linLogMode : false -- false
    , outboundAttractionDistribution: false
    , scalingRatio : 1000.0
    , skipHidden: false
    , slowDown : 1.0
    , startingIterations : 10.0
    , strongGravityMode : false
    { adjustSizes : true
    , barnesHutOptimize : true
    , batchEdgesDrawing : true
    , edgeWeightInfluence : 1.0
    -- fixedY : false
    , gravity : 0.01
    , hideEdgesOnMove : true
    , includeHiddenEdges : false
    , includeHiddenNodes : true
    , iterationsPerRender : 50.0 -- 10.0
    , linLogMode : false -- false
    , outboundAttractionDistribution : false
    , scalingRatio : 1000.0
    , skipHidden : false
    , slowDown : 1.0
    , startingIterations : 10.0
    , strongGravityMode : false
    }
    src/Gargantext/Components/GraphExplorer.purs
    View file @ 6963af35
    ......@@ -78,9 +78,8 @@ explorerWriteGraph :: R2.Component GraphWriteProps
    explorerWriteGraph = R.createElement explorerWriteGraphCpt
    explorerWriteGraphCpt :: R.Component GraphWriteProps
    explorerWriteGraphCpt = here.component "explorerWriteGraph" cpt where
    cpt props@{ boxes: { sidePanelGraph, sidePanelState }
    cpt props@{ boxes: { sidePanelGraph }
    , graph
    , hyperdataGraph
    , mMetaData' } _ = do
    R.useEffectOnce' $ do
    T.write_ (Just { mGraph: Just graph
    ......@@ -99,13 +98,13 @@ explorer = R.createElement explorerCpt
    explorerCpt :: R.Component Props
    explorerCpt = here.component "explorer" cpt
    where
    cpt props@{ boxes: boxes@{ graphVersion, handed, reloadForest, showTree, sidePanelGraph, sidePanelState }
    , graph
    , graphId
    , hyperdataGraph
    , session
    } _ = do
    { mMetaData, sideTab } <- GEST.focusedSidePanel sidePanelGraph
    cpt { boxes: { graphVersion, handed, reloadForest, showTree, sidePanelGraph, sidePanelState }
    , graph
    , graphId
    , hyperdataGraph
    , session
    } _ = do
    { mMetaData } <- GEST.focusedSidePanel sidePanelGraph
    graphVersion' <- T.useLive T.unequal graphVersion
    handed' <- T.useLive T.unequal handed
    mMetaData' <- T.useLive T.unequal mMetaData
    ......@@ -318,7 +317,10 @@ transformGraph graph { edgeConfluence'
    hasSelection = not $ Set.isEmpty selectedNodeIds'
    newEdges' = Seq.filter edgeFilter $ Seq.map (
    edgeHideWeight <<< edgeHideConfluence <<< edgeShowFilter <<< edgeMarked
    -- NOTE We don't use edgeShowFilter anymore because of
    -- https://gitlab.iscpif.fr/gargantext/purescript-gargantext/issues/304
    -- edgeHideWeight <<< edgeHideConfluence <<< edgeShowFilter <<< edgeMarked
    edgeHideWeight <<< edgeHideConfluence <<< edgeMarked
    ) edges
    newNodes = Seq.filter nodeFilter $ Seq.map (nodeMarked <<< nodeHideSize) nodes
    newEdges = Seq.filter (edgeInGraph $ Set.fromFoldable $ Seq.map _.id newNodes) newEdges'
    ......
    src/Gargantext/Components/GraphExplorer/Controls.purs
    View file @ 6963af35
    ......@@ -85,7 +85,6 @@ controlsCpt = here.component "controls" cpt
    , showControls
    , showEdges
    , showLouvain
    , showTree
    , sidePanelState
    , sideTab
    , sigmaRef } _ = do
    ......@@ -112,8 +111,9 @@ controlsCpt = here.component "controls" cpt
    -- Handle automatic edge hiding when FA is running (to prevent flickering).
    -- TODO Commented temporarily: this breaks forceatlas rendering after reset
    -- R.useEffect2' sigmaRef forceAtlasState' $ do
    -- T.modify_ (SigmaxT.forceAtlasEdgeState forceAtlasState') showEdges
    -- NOTE This is a hack anyways. It's force atlas that should be fixed.
    R.useEffect2' sigmaRef forceAtlasState' $ do
    T.modify_ (SigmaxT.forceAtlasEdgeState forceAtlasState') showEdges
    -- Automatic opening of sidebar when a node is selected (but only first time).
    R.useEffect' $ do
    ......
    src/Gargantext/Hooks/Sigmax/Sigma.purs
    View file @ 6963af35
    ......@@ -6,7 +6,6 @@ import DOM.Simple.Types (Element)
    import Data.Array as A
    import Data.Either (Either(..))
    import Data.Maybe (Maybe)
    import Data.Nullable (null)
    import Data.Sequence as Seq
    import Data.Set as Set
    import Data.Traversable (traverse_)
    ......@@ -48,7 +47,7 @@ sigma = runEffectFn3 _sigma Left Right
    -- | Kill a sigmajs instance.
    kill :: Sigma -> Effect Unit
    kill sigma = pure $ sigma ... "kill" $ []
    kill s = pure $ s ... "kill" $ []
    -- | Call the `refresh()` method on a sigmajs instance.
    refresh :: Sigma -> Effect Unit
    ......
    src/Gargantext/Hooks/Sigmax/Sigmajs.purs
    View file @ 6963af35
    ......@@ -2,10 +2,8 @@ module Gargantext.Hooks.Sigmax.Sigmajs where
    import Prelude
    import Data.Nullable (Nullable)
    import Effect (Effect)
    import Effect.Uncurried (EffectFn1, runEffectFn1)
    import React (SyntheticEventHandler)
    import React.Ref as RR
    import Record.Unsafe (unsafeGet)
    import Unsafe.Coerce (unsafeCoerce)
    ......
    src/Gargantext/Hooks/Sigmax/Types.purs
    View file @ 6963af35
    ......@@ -173,6 +173,8 @@ toggleForceAtlasState Killed = InitialRunning
    -- | Custom state for show edges. Normally it is EShow or EHide (show/hide
    -- | edges). However, edges are temporarily turned off when forceAtlas is
    -- | running.
    -- | NOTE ETempHiddenThenShow state is a hack for force atlas
    -- | flickering. Ideally it should be removed from here.
    data ShowEdgesState = EShow | EHide | ETempHiddenThenShow
    derive instance Generic ShowEdgesState _
    ......
    yarn.lock
    View file @ 6963af35
    ......@@ -970,9 +970,9 @@
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    fastq "^1.6.0"
    ......@@ -1580,9 +1580,9 @@
    dequal "^2.0.2"
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    dependencies:
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    ......@@ -1592,40 +1592,40 @@
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    ......@@ -2044,9 +2044,9 @@ bootstrap-dark@^1.0.3:
    bootstrap ">=4.3"
    bootstrap@>=4.3, bootstrap@^5.0.1:
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    ......@@ -2395,9 +2395,9 @@ caniuse-api@^3.0.0:
    lodash.uniq "^4.5.0"
    caniuse-lite@^1.0.0, caniuse-lite@^1.0.30001219:
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    ......@@ -2741,17 +2741,17 @@ copy-descriptor@^0.1.0:
    integrity sha1-Z29us8OZl8LuGsOpJP1hJHSPV40=
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    ......@@ -3053,9 +3053,9 @@ debug@2.6.9, debug@^2.2.0, debug@^2.3.3:
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    ......@@ -3318,9 +3318,9 @@ ejs@^2.6.1:
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    ......@@ -3619,9 +3619,9 @@ fast-levenshtein@~2.0.6:
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    version "2.0.8"
    resolved "https://registry.yarnpkg.com/fast-safe-stringify/-/fast-safe-stringify-2.0.8.tgz#dc2af48c46cf712b683e849b2bbd446b32de936f"
    integrity sha512-lXatBjf3WPjmWD6DpIZxkeSsCOwqI0maYMpgDlx8g4U2qi4lbjA9oH/HD2a87G+KfsUmo5WbJFmqBZlPxtptag==
    fast-url-parser@1.1.3:
    version "1.1.3"
    ......@@ -3641,9 +3641,9 @@ fastparse@^1.1.2:
    integrity sha512-483XLLxTVIwWK3QTrMGRqUfUpoOs/0hbQrl2oz4J0pAcm3A3bu84wxTFqGqkJzewCLdME38xJLJAxBABfQT8sQ==
    fastq@^1.6.0:
    version "1.11.0"
    resolved "https://registry.yarnpkg.com/fastq/-/fastq-1.11.0.tgz#bb9fb955a07130a918eb63c1f5161cc32a5d0858"
    integrity sha512-7Eczs8gIPDrVzT+EksYBcupqMyxSHXXrHOLRRxU2/DicV8789MRBRR8+Hc2uWzUupOs4YS4JzBmBxjjCVBxD/g==
    version "1.11.1"
    resolved "https://registry.yarnpkg.com/fastq/-/fastq-1.11.1.tgz#5d8175aae17db61947f8b162cfc7f63264d22807"
    integrity sha512-HOnr8Mc60eNYl1gzwp6r5RoUyAn5/glBolUzP/Ez6IFVPMPirxn/9phgL6zhOtaTy7ISwPvQ+wT+hfcRZh/bzw==
    dependencies:
    reusify "^1.0.4"
    ......@@ -3665,9 +3665,9 @@ filesize@^4.1.2:
    integrity sha512-bP82Hi8VRZX/TUBKfE24iiUGsB/sfm2WUrwTQyAzQrhO3V9IhcBBNBXMyzLY5orACxRyYJ3d2HeRVX+eFv4lmA==
    filesize@^6.1.0:
    version "6.3.0"
    resolved "https://registry.yarnpkg.com/filesize/-/filesize-6.3.0.tgz#dff53cfb3f104c9e422f346d53be8dbcc971bf11"
    integrity sha512-ytx0ruGpDHKWVoiui6+BY/QMNngtDQ/pJaFwfBpQif0J63+E8DLdFyqS3NkKQn7vIruUEpoGD9JUJSg7Kp+I0g==
    version "6.4.0"
    resolved "https://registry.yarnpkg.com/filesize/-/filesize-6.4.0.tgz#914f50471dd66fdca3cefe628bd0cde4ef769bcd"
    integrity sha512-mjFIpOHC4jbfcTfoh4rkWpI31mF7viw9ikj/JyLoKzqlwG/YsefKfvYlYhdYdg/9mtK2z1AzgN/0LvVQ3zdlSQ==
    fill-range@^4.0.0:
    version "4.0.0"
    ......@@ -3882,9 +3882,9 @@ globals@^11.1.0:
    integrity sha512-WOBp/EEGUiIsJSp7wcv/y6MO+lV9UoncWqxuFfm8eBwzWNgyfBd6Gz+IeKQ9jCmyhoH99g15M3T+QaVHFjizVA==
    globals@^13.2.0:
    version "13.9.0"
    resolved "https://registry.yarnpkg.com/globals/-/globals-13.9.0.tgz#4bf2bf635b334a173fb1daf7c5e6b218ecdc06cb"
    integrity sha512-74/FduwI/JaIrr1H8e71UbDE+5x7pIPs1C2rrwC52SszOo043CsWOZEMW7o2Y58xwm9b+0RBKDxY5n2sUpEFxA==
    version "13.10.0"
    resolved "https://registry.yarnpkg.com/globals/-/globals-13.10.0.tgz#60ba56c3ac2ca845cfbf4faeca727ad9dd204676"
    integrity sha512-piHC3blgLGFjvOuMmWZX60f+na1lXFDhQXBf1UYp2fXPXqvEUbOhNwi6BsQ0bQishwedgnjkwv1d9zKf+MWw3g==
    dependencies:
    type-fest "^0.20.2"
    ......@@ -4162,9 +4162,9 @@ immer@^8.0.1:
    integrity sha512-jMfL18P+/6P6epANRvRk6q8t+3gGhqsJ9EuJ25AXE+9bNTYtssvzeYbEd0mXRYWCmmXSIbnlpz6vd6iJlmGGGQ==
    immer@^9.0.3:
    version "9.0.3"
    resolved "https://registry.yarnpkg.com/immer/-/immer-9.0.3.tgz#146e2ba8b84d4b1b15378143c2345559915097f4"
    integrity sha512-mONgeNSMuyjIe0lkQPa9YhdmTv8P19IeHV0biYhcXhbd5dhdB9HSK93zBpyKjp6wersSUgT5QyU0skmejUVP2A==
    version "9.0.5"
    resolved "https://registry.yarnpkg.com/immer/-/immer-9.0.5.tgz#a7154f34fe7064f15f00554cc94c66cc0bf453ec"
    integrity sha512-2WuIehr2y4lmYz9gaQzetPR2ECniCifk4ORaQbU3g5EalLt+0IVTosEPJ5BoYl/75ky2mivzdRzV8wWgQGOSYQ==
    import-fresh@^2.0.0:
    version "2.0.0"
    ......@@ -4330,9 +4330,9 @@ is-color-stop@^1.0.0:
    rgba-regex "^1.0.0"
    is-core-module@^2.2.0:
    version "2.4.0"
    resolved "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.4.0.tgz#8e9fc8e15027b011418026e98f0e6f4d86305cc1"
    integrity sha512-6A2fkfq1rfeQZjxrZJGerpLCTHRNEBiSgnu0+obeJpEPZRUooHgsizvzv0ZjJwOz3iWIHdJtVWJ/tmPr3D21/A==
    version "2.5.0"
    resolved "https://registry.yarnpkg.com/is-core-module/-/is-core-module-2.5.0.tgz#f754843617c70bfd29b7bd87327400cda5c18491"
    integrity sha512-TXCMSDsEHMEEZ6eCA8rwRDbLu55MRGmrctljsBX/2v1d9/GzqHOxW5c5oPSgrUt2vBFXebu9rGqckXGPWOlYpg==
    dependencies:
    has "^1.0.3"
    ......@@ -5253,9 +5253,9 @@ object-copy@^0.1.0:
    kind-of "^3.0.3"
    object-inspect@^1.10.3:
    version "1.10.3"
    resolved "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.10.3.tgz#c2aa7d2d09f50c99375704f7a0adf24c5782d369"
    integrity sha512-e5mCJlSH7poANfC8z8S9s9S2IN5/4Zb3aZ33f5s8YqoazCFzNLloLU8r5VCG+G7WoqLvAAZoVMcy3tp/3X0Plw==
    version "1.11.0"
    resolved "https://registry.yarnpkg.com/object-inspect/-/object-inspect-1.11.0.tgz#9dceb146cedd4148a0d9e51ab88d34cf509922b1"
    integrity sha512-jp7ikS6Sd3GxQfZJPyH3cjcbJF6GZPClgdV+EFygjFLQ5FmW/dRUnTd9PQ9k0JhoNDabWFbpF1yCdSWCC6gexg==
    object-is@^1.0.1:
    version "1.1.5"
    ......@@ -6162,9 +6162,9 @@ purescript-language-server@^0.15.2:
    which "^2.0.2"
    purescript@^0.14.2:
    version "0.14.2"
    resolved "https://registry.yarnpkg.com/purescript/-/purescript-0.14.2.tgz#6c42c941c014c23991d7782bbaa71f1ee73aa290"
    integrity sha512-kEXY5yUaG8a1FNN/IdtfNl4gcql7p76CPqnanMZ37GdtBZTcFK/SB24bp2rOAT1/N9qU8/corlra6uNf4+5pgQ==
    version "0.14.3"
    resolved "https://registry.yarnpkg.com/purescript/-/purescript-0.14.3.tgz#8a725c5dc640afeebb1fe9e2512477827ca05ee8"
    integrity sha512-lAzHU/tcmxF4n3YUwUTwG/sIwHzjUq1zsIOBNmaVpbm7hxM+RhOTKMJdwdbTeCjxlilyVPWOLUQ6Exll4DYuMA==
    dependencies:
    purescript-installer "^0.2.0"
    ......@@ -6288,9 +6288,9 @@ react-lifecycles-compat@^3.0.4:
    integrity sha512-fBASbA6LnOU9dOU2eW7aQ8xmYBSXUIWr+UmF9b1efZBazGNO+rcXT/icdKnYm2pTwcRylVUYwW7H1PHfLekVzA==
    react-overlays@^5.0.1:
    version "5.0.1"
    resolved "https://registry.yarnpkg.com/react-overlays/-/react-overlays-5.0.1.tgz#7e2c3cd3c0538048b0b7451d203b1289c561b7f2"
    integrity sha512-plwUJieTBbLSrgvQ4OkkbTD/deXgxiJdNuKzo6n1RWE3OVnQIU5hffCGS/nvIuu6LpXFs2majbzaXY8rcUVdWA==
    version "5.1.1"
    resolved "https://registry.yarnpkg.com/react-overlays/-/react-overlays-5.1.1.tgz#2e7cf49744b56537c7828ccb94cfc63dd778ae4f"
    integrity sha512-eCN2s2/+GVZzpnId4XVWtvDPYYBD2EtOGP74hE+8yDskPzFy9+pV1H3ZZihxuRdEbQzzacySaaDkR7xE0ydl4Q==
    dependencies:
    "@babel/runtime" "^7.13.8"
    "@popperjs/core" "^2.8.6"
    ......@@ -6659,9 +6659,9 @@ sander@^0.5.0:
    rimraf "^2.5.2"
    sass@^1.23.7:
    version "1.35.1"
    resolved "https://registry.yarnpkg.com/sass/-/sass-1.35.1.tgz#90ecf774dfe68f07b6193077e3b42fb154b9e1cd"
    integrity sha512-oCisuQJstxMcacOPmxLNiLlj4cUyN2+8xJnG7VanRoh2GOLr9RqkvI4AxA4a6LHVg/rsu+PmxXeGhrdSF9jCiQ==
    version "1.35.2"
    resolved "https://registry.yarnpkg.com/sass/-/sass-1.35.2.tgz#b732314fcdaf7ef8d0f1698698adc378043cb821"
    integrity sha512-jhO5KAR+AMxCEwIH3v+4zbB2WB0z67V1X0jbapfVwQQdjHZUGUyukpnoM6+iCMfsIUC016w9OPKQ5jrNOS9uXw==
    dependencies:
    chokidar ">=3.0.0 <4.0.0"
    ......@@ -7280,9 +7280,9 @@ term-size@^2.2.1:
    integrity sha512-wK0Ri4fOGjv/XPy8SBHZChl8CM7uMc5VML7SqiQ0zG7+J5Vr+RMQDoHa2CNT6KHUnTGIXH34UDMkPzAUyapBZg==
    terser@^5.2.0, terser@^5.6.1:
    version "5.7.0"
    resolved "https://registry.yarnpkg.com/terser/-/terser-5.7.0.tgz#a761eeec206bc87b605ab13029876ead938ae693"
    integrity sha512-HP5/9hp2UaZt5fYkuhNBR8YyRcT8juw8+uFbAme53iN9hblvKnLUTKkmwJG6ocWpIKf8UK4DoeWG4ty0J6S6/g==
    version "5.7.1"
    resolved "https://registry.yarnpkg.com/terser/-/terser-5.7.1.tgz#2dc7a61009b66bb638305cb2a824763b116bf784"
    integrity sha512-b3e+d5JbHAe/JSjwsC3Zn55wsBIM7AsHLjKxT31kGCldgbpFePaFo+PiddtO6uwRZWRw7sPXmAN8dTW61xmnSg==
    dependencies:
    commander "^2.20.0"
    source-map "~0.7.2"
    ......@@ -7845,9 +7845,9 @@ ws@^6.1.2:
    async-limiter "~1.0.0"
    ws@^7.0.0:
    version "7.5.0"
    resolved "https://registry.yarnpkg.com/ws/-/ws-7.5.0.tgz#0033bafea031fb9df041b2026fc72a571ca44691"
    integrity sha512-6ezXvzOZupqKj4jUqbQ9tXuJNo+BR2gU8fFRk3XCP3e0G6WT414u5ELe6Y0vtp7kmSJ3F7YWObSNr1ESsgi4vw==
    version "7.5.3"
    resolved "https://registry.yarnpkg.com/ws/-/ws-7.5.3.tgz#160835b63c7d97bfab418fc1b8a9fced2ac01a74"
    integrity sha512-kQ/dHIzuLrS6Je9+uv81ueZomEwH0qVYstcAQ4/Z93K8zeko9gtAbttJWzoC5ukqXY1PpoouV3+VSOqEAFt5wg==
    xhr2@^0.2.1:
    version "0.2.1"
    ......
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