diff --git a/gargantext.cabal b/gargantext.cabal
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+cabal-version: 1.12
+
+-- This file has been generated from package.yaml by hpack version 0.35.0.
+--
+-- see: https://github.com/sol/hpack
+
+name: gargantext
+version: 0.0.6.7.1
+synopsis: Search, map, share
+description: Please see README.md
+category: Data
+homepage: https://gargantext.org
+author: Gargantext Team
+maintainer: team@gargantext.org
+copyright: Copyright: (c) 2017-Present: see git logs and README
+license: AGPL-3
+license-file: LICENSE
+build-type: Simple
+data-files:
+ ekg-assets/index.html
+ ekg-assets/monitor.js
+ ekg-assets/monitor.css
+ ekg-assets/jquery.flot.min.js
+ ekg-assets/jquery-1.6.4.min.js
+ ekg-assets/bootstrap-1.4.0.min.css
+ ekg-assets/chart_line_add.png
+ ekg-assets/cross.png
+
+library
+ exposed-modules:
+ Gargantext
+ Gargantext.API
+ Gargantext.API.Dev
+ Gargantext.API.HashedResponse
+ Gargantext.API.Node
+ Gargantext.API.Node.Share
+ Gargantext.API.Node.File
+ Gargantext.API.Ngrams
+ Gargantext.API.Ngrams.Tools
+ Gargantext.API.Ngrams.Types
+ Gargantext.API.Ngrams.Prelude
+ Gargantext.API.Admin.Settings
+ Gargantext.API.Admin.EnvTypes
+ Gargantext.API.Admin.Auth.Types
+ Gargantext.API.Admin.Types
+ Gargantext.API.Prelude
+ Gargantext.API.Client
+ Gargantext.Core
+ Gargantext.Core.NodeStory
+ Gargantext.Core.Methods.Similarities
+ Gargantext.Core.Types
+ Gargantext.Core.Types.Individu
+ Gargantext.Core.Types.Main
+ Gargantext.Core.Utils.Prefix
+ Gargantext.Utils.SpacyNLP
+ Gargantext.Database.Action.Flow
+ Gargantext.Database.Action.Flow.Types
+ Gargantext.Database.Action.User.New
+ Gargantext.Database.Query.Table.User
+ Gargantext.Database.Query.Table.Node
+ Gargantext.Database.Query.Table.Node.UpdateOpaleye
+ Gargantext.Database.Query.Table.NgramsPostag
+ Gargantext.Database.Schema.Ngrams
+ Gargantext.Database.Prelude
+ Gargantext.Database.Admin.Trigger.Init
+ Gargantext.Database.Admin.Config
+ Gargantext.Database.Admin.Types.Hyperdata
+ Gargantext.Database.Admin.Types.Node
+ Gargantext.Defaults
+ Gargantext.Core.Text
+ Gargantext.Core.Text.Context
+ Gargantext.Core.Text.Corpus.Parsers
+ Gargantext.Core.Text.Corpus.Parsers.Date.Parsec
+ Gargantext.Core.Text.Corpus.API
+ Gargantext.Core.Text.Corpus.Parsers.CSV
+ Gargantext.Core.Text.List.Formats.CSV
+ Gargantext.Core.Text.Metrics
+ Gargantext.Core.Text.Metrics.TFICF
+ Gargantext.Core.Text.Metrics.CharByChar
+ Gargantext.Core.Text.Metrics.Count
+ Gargantext.Core.Text.Prepare
+ Gargantext.Core.Text.Search
+ Gargantext.Core.Text.Terms
+ Gargantext.Core.Text.Terms.Mono
+ Gargantext.Core.Text.Terms.Multi.Lang.En
+ Gargantext.Core.Text.Terms.Multi.Lang.Fr
+ Gargantext.Core.Text.Terms.Multi.RAKE
+ Gargantext.Core.Text.Terms.WithList
+ Gargantext.Core.Viz.Graph
+ Gargantext.Core.Viz.Graph.Tools
+ Gargantext.Core.Viz.Graph.Tools.IGraph
+ Gargantext.Core.Viz.Graph.Index
+ Gargantext.Core.Viz.Phylo
+ Gargantext.Core.Viz.Phylo.API
+ Gargantext.Core.Viz.Phylo.API.Tools
+ Gargantext.Core.Viz.Phylo.PhyloMaker
+ Gargantext.Core.Viz.Phylo.PhyloTools
+ Gargantext.Core.Viz.Phylo.PhyloExport
+ Gargantext.Core.Viz.Phylo.SynchronicClustering
+ Gargantext.Core.Viz.Types
+ other-modules:
+ Gargantext.API.Admin.Auth
+ Gargantext.API.Admin.FrontEnd
+ Gargantext.API.Admin.Orchestrator
+ Gargantext.API.Admin.Orchestrator.Scrapy.Schedule
+ Gargantext.API.Admin.Orchestrator.Types
+ Gargantext.API.Admin.Utils
+ Gargantext.API.Context
+ Gargantext.API.Count
+ Gargantext.API.EKG
+ Gargantext.API.Flow
+ Gargantext.API.GraphQL
+ Gargantext.API.GraphQL.Annuaire
+ Gargantext.API.GraphQL.AsyncTask
+ Gargantext.API.GraphQL.IMT
+ Gargantext.API.GraphQL.Node
+ Gargantext.API.GraphQL.Team
+ Gargantext.API.GraphQL.TreeFirstLevel
+ Gargantext.API.GraphQL.User
+ Gargantext.API.GraphQL.UserInfo
+ Gargantext.API.GraphQL.Utils
+ Gargantext.API.Job
+ Gargantext.API.Metrics
+ Gargantext.API.Ngrams.List
+ Gargantext.API.Ngrams.List.Types
+ Gargantext.API.Ngrams.NgramsTree
+ Gargantext.API.Node.Contact
+ Gargantext.API.Node.Corpus.Annuaire
+ Gargantext.API.Node.Corpus.Export
+ Gargantext.API.Node.Corpus.Export.Types
+ Gargantext.API.Node.Corpus.New
+ Gargantext.API.Node.Corpus.New.File
+ Gargantext.API.Node.Corpus.New.Types
+ Gargantext.API.Node.Corpus.Searx
+ Gargantext.API.Node.Corpus.Types
+ Gargantext.API.Node.Document.Export
+ Gargantext.API.Node.Document.Export.Types
+ Gargantext.API.Node.DocumentsFromWriteNodes
+ Gargantext.API.Node.DocumentUpload
+ Gargantext.API.Node.FrameCalcUpload
+ Gargantext.API.Node.Get
+ Gargantext.API.Node.New
+ Gargantext.API.Node.Types
+ Gargantext.API.Node.Update
+ Gargantext.API.Public
+ Gargantext.API.Routes
+ Gargantext.API.Search
+ Gargantext.API.Server
+ Gargantext.API.Swagger
+ Gargantext.API.Table
+ Gargantext.API.ThrowAll
+ Gargantext.API.Types
+ Gargantext.Core.Ext.IMT
+ Gargantext.Core.Ext.IMTUser
+ Gargantext.Core.Flow.Ngrams
+ Gargantext.Core.Flow.Types
+ Gargantext.Core.Mail
+ Gargantext.Core.Mail.Types
+ Gargantext.Core.Methods.Graph.BAC.Proxemy
+ Gargantext.Core.Methods.Graph.MaxClique
+ Gargantext.Core.Methods.Matrix.Accelerate.Utils
+ Gargantext.Core.Methods.Similarities.Accelerate.Conditional
+ Gargantext.Core.Methods.Similarities.Accelerate.Distributional
+ Gargantext.Core.Methods.Similarities.Accelerate.SpeGen
+ Gargantext.Core.Methods.Similarities.Conditional
+ Gargantext.Core.Methods.Similarities.Distributional
+ Gargantext.Core.NodeStoryFile
+ Gargantext.Core.Statistics
+ Gargantext.Core.Text.Convert
+ Gargantext.Core.Text.Corpus.API.Arxiv
+ Gargantext.Core.Text.Corpus.API.Hal
+ Gargantext.Core.Text.Corpus.API.Isidore
+ Gargantext.Core.Text.Corpus.API.Istex
+ Gargantext.Core.Text.Corpus.API.Pubmed
+ Gargantext.Core.Text.Corpus.Parsers.Date
+ Gargantext.Core.Text.Corpus.Parsers.Date.Attoparsec
+ Gargantext.Core.Text.Corpus.Parsers.FrameWrite
+ Gargantext.Core.Text.Corpus.Parsers.GrandDebat
+ Gargantext.Core.Text.Corpus.Parsers.Isidore
+ Gargantext.Core.Text.Corpus.Parsers.Json2Csv
+ Gargantext.Core.Text.Corpus.Parsers.RIS
+ Gargantext.Core.Text.Corpus.Parsers.RIS.Presse
+ Gargantext.Core.Text.Corpus.Parsers.Wikidata
+ Gargantext.Core.Text.Corpus.Parsers.Wikidata.Crawler
+ Gargantext.Core.Text.Corpus.Parsers.Wikimedia
+ Gargantext.Core.Text.Corpus.Parsers.WOS
+ Gargantext.Core.Text.Learn
+ Gargantext.Core.Text.List
+ Gargantext.Core.Text.List.Group
+ Gargantext.Core.Text.List.Group.Prelude
+ Gargantext.Core.Text.List.Group.WithScores
+ Gargantext.Core.Text.List.Group.WithStem
+ Gargantext.Core.Text.List.Learn
+ Gargantext.Core.Text.List.Merge
+ Gargantext.Core.Text.List.Social
+ Gargantext.Core.Text.List.Social.Find
+ Gargantext.Core.Text.List.Social.History
+ Gargantext.Core.Text.List.Social.Patch
+ Gargantext.Core.Text.List.Social.Prelude
+ Gargantext.Core.Text.Metrics.FrequentItemSet
+ Gargantext.Core.Text.Metrics.SpeGen.IncExc
+ Gargantext.Core.Text.Metrics.Utils
+ Gargantext.Core.Text.Samples.CH
+ Gargantext.Core.Text.Samples.DE
+ Gargantext.Core.Text.Samples.EN
+ Gargantext.Core.Text.Samples.FR
+ Gargantext.Core.Text.Samples.SP
+ Gargantext.Core.Text.Terms.Eleve
+ Gargantext.Core.Text.Terms.Mono.Stem
+ Gargantext.Core.Text.Terms.Mono.Stem.En
+ Gargantext.Core.Text.Terms.Mono.Token
+ Gargantext.Core.Text.Terms.Mono.Token.En
+ Gargantext.Core.Text.Terms.Multi
+ Gargantext.Core.Text.Terms.Multi.Group
+ Gargantext.Core.Text.Terms.Multi.PosTagging
+ Gargantext.Core.Text.Terms.Multi.PosTagging.Types
+ Gargantext.Core.Types.Phylo
+ Gargantext.Core.Utils
+ Gargantext.Core.Utils.DateUtils
+ Gargantext.Core.Viz
+ Gargantext.Core.Viz.Chart
+ Gargantext.Core.Viz.Graph.API
+ Gargantext.Core.Viz.Graph.Bridgeness
+ Gargantext.Core.Viz.Graph.FGL
+ Gargantext.Core.Viz.Graph.GEXF
+ Gargantext.Core.Viz.Graph.Legend
+ Gargantext.Core.Viz.Graph.Tools.Infomap
+ Gargantext.Core.Viz.Graph.Types
+ Gargantext.Core.Viz.Graph.Utils
+ Gargantext.Core.Viz.LegacyPhylo
+ Gargantext.Core.Viz.Phylo.Example
+ Gargantext.Core.Viz.Phylo.Legacy.LegacyMain
+ Gargantext.Core.Viz.Phylo.TemporalMatching
+ Gargantext.Data.HashMap.Strict.Utils
+ Gargantext.Database
+ Gargantext.Database.Action.Delete
+ Gargantext.Database.Action.Flow.Annuaire
+ Gargantext.Database.Action.Flow.List
+ Gargantext.Database.Action.Flow.Pairing
+ Gargantext.Database.Action.Flow.Utils
+ Gargantext.Database.Action.Index
+ Gargantext.Database.Action.Learn
+ Gargantext.Database.Action.Mail
+ Gargantext.Database.Action.Metrics
+ Gargantext.Database.Action.Metrics.Lists
+ Gargantext.Database.Action.Metrics.NgramsByContext
+ Gargantext.Database.Action.Metrics.TFICF
+ Gargantext.Database.Action.Node
+ Gargantext.Database.Action.Search
+ Gargantext.Database.Action.Share
+ Gargantext.Database.Action.TSQuery
+ Gargantext.Database.Action.User
+ Gargantext.Database.Admin.Access
+ Gargantext.Database.Admin.Bashql
+ Gargantext.Database.Admin.Trigger.ContextNodeNgrams
+ Gargantext.Database.Admin.Trigger.Contexts
+ Gargantext.Database.Admin.Trigger.NodesContexts
+ Gargantext.Database.Admin.Types.Hyperdata.Any
+ Gargantext.Database.Admin.Types.Hyperdata.Contact
+ Gargantext.Database.Admin.Types.Hyperdata.Corpus
+ Gargantext.Database.Admin.Types.Hyperdata.CorpusField
+ Gargantext.Database.Admin.Types.Hyperdata.Dashboard
+ Gargantext.Database.Admin.Types.Hyperdata.Default
+ Gargantext.Database.Admin.Types.Hyperdata.Document
+ Gargantext.Database.Admin.Types.Hyperdata.File
+ Gargantext.Database.Admin.Types.Hyperdata.Folder
+ Gargantext.Database.Admin.Types.Hyperdata.Frame
+ Gargantext.Database.Admin.Types.Hyperdata.List
+ Gargantext.Database.Admin.Types.Hyperdata.Model
+ Gargantext.Database.Admin.Types.Hyperdata.Phylo
+ Gargantext.Database.Admin.Types.Hyperdata.Prelude
+ Gargantext.Database.Admin.Types.Hyperdata.Texts
+ Gargantext.Database.Admin.Types.Hyperdata.User
+ Gargantext.Database.Admin.Types.Metrics
+ Gargantext.Database.GargDB
+ Gargantext.Database.Query
+ Gargantext.Database.Query.Facet
+ Gargantext.Database.Query.Filter
+ Gargantext.Database.Query.Join
+ Gargantext.Database.Query.Prelude
+ Gargantext.Database.Query.Table.Context
+ Gargantext.Database.Query.Table.ContextNodeNgrams
+ Gargantext.Database.Query.Table.ContextNodeNgrams2
+ Gargantext.Database.Query.Table.Ngrams
+ Gargantext.Database.Query.Table.Node.Children
+ Gargantext.Database.Query.Table.Node.Contact
+ Gargantext.Database.Query.Table.Node.Document.Add
+ Gargantext.Database.Query.Table.Node.Document.Insert
+ Gargantext.Database.Query.Table.Node.Error
+ Gargantext.Database.Query.Table.Node.Select
+ Gargantext.Database.Query.Table.Node.Update
+ Gargantext.Database.Query.Table.Node.User
+ Gargantext.Database.Query.Table.Node_NodeNgramsNodeNgrams
+ Gargantext.Database.Query.Table.NodeContext
+ Gargantext.Database.Query.Table.NodeContext_NodeContext
+ Gargantext.Database.Query.Table.NodeNgrams
+ Gargantext.Database.Query.Table.NodeNode
+ Gargantext.Database.Query.Table.NodeNodeNgrams
+ Gargantext.Database.Query.Table.NodesNgramsRepo
+ Gargantext.Database.Query.Tree
+ Gargantext.Database.Query.Tree.Error
+ Gargantext.Database.Query.Tree.Root
+ Gargantext.Database.Schema.Context
+ Gargantext.Database.Schema.ContextNodeNgrams
+ Gargantext.Database.Schema.ContextNodeNgrams2
+ Gargantext.Database.Schema.NgramsPostag
+ Gargantext.Database.Schema.Node
+ Gargantext.Database.Schema.Node_NodeNgramsNodeNgrams
+ Gargantext.Database.Schema.NodeContext
+ Gargantext.Database.Schema.NodeContext_NodeContext
+ Gargantext.Database.Schema.NodeNgrams
+ Gargantext.Database.Schema.NodeNode
+ Gargantext.Database.Schema.NodeNodeNgrams
+ Gargantext.Database.Schema.NodeNodeNgrams2
+ Gargantext.Database.Schema.NodesNgramsRepo
+ Gargantext.Database.Schema.Prelude
+ Gargantext.Database.Schema.User
+ Gargantext.Database.Types
+ Gargantext.Utils.Aeson
+ Gargantext.Utils.JohnSnowNLP
+ Gargantext.Utils.Servant
+ Gargantext.Utils.UTCTime
+ Paths_gargantext
+ hs-source-dirs:
+ src
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wmissing-signatures -Wunused-binds -Wunused-imports -Werror -freduction-depth=300
+ build-depends:
+ HSvm
+ , KMP
+ , MissingH
+ , MonadRandom
+ , QuickCheck
+ , Unique
+ , accelerate
+ , accelerate-arithmetic
+ , accelerate-llvm-native
+ , accelerate-utility
+ , aeson
+ , aeson-lens
+ , aeson-pretty
+ , array
+ , async
+ , attoparsec
+ , auto-update
+ , base >=4.7 && <5
+ , base16-bytestring
+ , base64-bytestring
+ , blaze-html
+ , blaze-markup
+ , blaze-svg
+ , bytestring
+ , case-insensitive
+ , cassava
+ , cborg
+ , cereal
+ , conduit
+ , conduit-extra
+ , containers
+ , contravariant
+ , crawlerArxiv
+ , crawlerHAL
+ , crawlerISTEX
+ , crawlerIsidore
+ , crawlerPubMed
+ , cryptohash
+ , data-time-segment
+ , deepseq
+ , directory
+ , duckling
+ , ekg-core
+ , ekg-json
+ , exceptions
+ , extra
+ , fast-logger
+ , fclabels
+ , fgl
+ , filelock
+ , filepath
+ , formatting
+ , full-text-search
+ , fullstop
+ , gargantext-graph >=0.1.0.0
+ , gargantext-prelude
+ , graphviz
+ , hashable
+ , haskell-igraph
+ , hlcm
+ , hsinfomap
+ , hsparql
+ , hstatistics
+ , http-api-data
+ , http-client
+ , http-client-tls
+ , http-conduit
+ , http-media
+ , http-types
+ , hxt
+ , ihaskell
+ , ini
+ , insert-ordered-containers
+ , jose
+ , json-stream
+ , lens
+ , lifted-base
+ , listsafe
+ , located-base
+ , logging-effect
+ , matrix
+ , monad-control
+ , monad-logger
+ , monad-logger-aeson
+ , morpheus-graphql
+ , morpheus-graphql-app
+ , morpheus-graphql-core
+ , morpheus-graphql-subscriptions
+ , mtl
+ , natural-transformation
+ , opaleye
+ , pandoc
+ , parallel
+ , parsec
+ , patches-class
+ , patches-map
+ , path
+ , path-io
+ , postgresql-simple
+ , pretty-simple
+ , probability
+ , process
+ , product-profunctors
+ , profunctors
+ , protolude
+ , pureMD5
+ , quickcheck-instances
+ , rake
+ , random
+ , rdf4h
+ , regex-compat
+ , regex-tdfa
+ , resource-pool
+ , resourcet
+ , safe
+ , scientific
+ , semigroups
+ , serialise
+ , servant
+ , servant-auth
+ , servant-auth-client
+ , servant-auth-server >=0.4.4.0
+ , servant-auth-swagger
+ , servant-blaze
+ , servant-cassava
+ , servant-client
+ , servant-ekg
+ , servant-flatten
+ , servant-job
+ , servant-mock
+ , servant-multipart
+ , servant-server
+ , servant-static-th
+ , servant-swagger
+ , servant-swagger-ui
+ , servant-xml
+ , simple-reflect
+ , singletons
+ , split
+ , stemmer
+ , swagger2
+ , taggy-lens
+ , tagsoup
+ , template-haskell
+ , temporary
+ , text
+ , text-conversions
+ , text-metrics
+ , time
+ , time-locale-compat
+ , timezone-series
+ , transformers
+ , transformers-base
+ , tuple
+ , unordered-containers
+ , uri-encode
+ , utf8-string
+ , uuid
+ , validity
+ , vector
+ , wai
+ , wai-app-static
+ , wai-cors
+ , wai-extra
+ , wai-websockets
+ , warp
+ , websockets
+ , wikiparsec
+ , wreq
+ , xml-conduit
+ , xml-types
+ , xmlbf
+ , yaml
+ , zip
+ , zlib
+ default-language: Haskell2010
+
+executable gargantext-admin
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-admin
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , text
+ default-language: Haskell2010
+
+executable gargantext-cbor2json
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-cbor2json
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ aeson
+ , base
+ , bytestring
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , serialise
+ , text
+ default-language: Haskell2010
+
+executable gargantext-cli
+ main-is: Main.hs
+ other-modules:
+ CleanCsvCorpus
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-cli
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ aeson
+ , async
+ , base
+ , bytestring
+ , cassava
+ , containers
+ , extra
+ , full-text-search
+ , gargantext
+ , gargantext-prelude
+ , ini
+ , optparse-generic
+ , split
+ , text
+ , unordered-containers
+ , vector
+ default-language: Haskell2010
+
+executable gargantext-client
+ main-is: Main.hs
+ other-modules:
+ Auth
+ Core
+ Options
+ Script
+ Tracking
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-client
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , ekg-json
+ , exceptions
+ , extra
+ , gargantext
+ , http-client
+ , optparse-generic
+ , servant
+ , servant-auth-client
+ , servant-client
+ , text
+ default-language: Haskell2010
+
+executable gargantext-import
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-import
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , servant-server
+ , text
+ default-language: Haskell2010
+
+executable gargantext-init
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-init
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , text
+ default-language: Haskell2010
+
+executable gargantext-invitations
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-invitations
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , text
+ default-language: Haskell2010
+
+executable gargantext-phylo
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-phylo
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ aeson
+ , async
+ , base
+ , bytestring
+ , cassava
+ , containers
+ , cryptohash
+ , directory
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , ini
+ , optparse-generic
+ , parallel
+ , split
+ , text
+ , time
+ , unordered-containers
+ , vector
+ default-language: Haskell2010
+
+executable gargantext-server
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-server
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -O2 -Wcompat -Wmissing-signatures -rtsopts -threaded -with-rtsopts=-N -with-rtsopts=-T -fprof-auto
+ build-depends:
+ base
+ , cassava
+ , containers
+ , extra
+ , full-text-search
+ , gargantext
+ , gargantext-prelude
+ , ini
+ , optparse-generic
+ , text
+ , unordered-containers
+ , vector
+ default-language: Haskell2010
+
+executable gargantext-upgrade
+ main-is: Main.hs
+ other-modules:
+ Paths_gargantext
+ hs-source-dirs:
+ bin/gargantext-upgrade
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N -O2 -Wmissing-signatures
+ build-depends:
+ base
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , postgresql-simple
+ , text
+ default-language: Haskell2010
+
+test-suite garg-test
+ type: exitcode-stdio-1.0
+ main-is: Main.hs
+ other-modules:
+ Core.Text
+ Core.Text.Examples
+ Core.Text.Flow
+ Graph.Clustering
+ Graph.Distance
+ Ngrams.Lang
+ Ngrams.Lang.En
+ Ngrams.Lang.Fr
+ Ngrams.Lang.Occurrences
+ Ngrams.Metrics
+ Parsers.Date
+ Parsers.Types
+ Parsers.WOS
+ Utils.Crypto
+ Paths_gargantext
+ hs-source-dirs:
+ src-test
+ default-extensions:
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NamedFieldPuns
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ RecordWildCards
+ DataKinds
+ DeriveGeneric
+ FlexibleContexts
+ FlexibleInstances
+ GeneralizedNewtypeDeriving
+ MultiParamTypeClasses
+ NoImplicitPrelude
+ OverloadedStrings
+ RankNTypes
+ ghc-options: -Wall -threaded -rtsopts -with-rtsopts=-N
+ build-depends:
+ QuickCheck
+ , base
+ , duckling
+ , extra
+ , gargantext
+ , gargantext-prelude
+ , hspec
+ , parsec
+ , quickcheck-instances
+ , text
+ , time
+ , unordered-containers
+ default-language: Haskell2010
diff --git a/src-test/Graph/Clustering.hs b/src-test/Graph/Clustering.hs
index 39e45f3852657663de7885a3301dea95cdfb1551..6c1adee148235ca271a1ebc5a7086518ef0348f5 100644
--- a/src-test/Graph/Clustering.hs
+++ b/src-test/Graph/Clustering.hs
@@ -15,7 +15,7 @@ module Graph.Clustering where
import Gargantext.API.Ngrams.Types (NgramsTerm(..))
import Gargantext.Core.Viz.Graph (Graph(..), Strength(..))
-import Gargantext.Core.Viz.Graph.Tools (doDistanceMap)
+import Gargantext.Core.Viz.Graph.Tools (doSimilarityMap)
import Gargantext.Core.Viz.Graph.Tools.IGraph (spinglass)
import Gargantext.Prelude
import Test.Hspec
@@ -24,7 +24,7 @@ import qualified Data.HashMap.Strict as HashMap
import qualified Data.List as List
import Gargantext.Core.Viz.Graph.Tools (PartitionMethod(..))
import Gargantext.Core.Viz.Graph.Tools.IGraph (spinglass)
-import Gargantext.Core.Methods.Distances (Distance(..))
+import Gargantext.Core.Methods.Similarities (Similarity(..))
myCooc :: HashMap (NgramsTerm, NgramsTerm) Int
myCooc = HashMap.fromList [((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "sqrt"}),12),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "data"}),8),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "transverse momentum"}),6),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "gev au"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "rhic"}),13),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "sqrt"}),27),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "s"}),8),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "p"}),27),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "s"}),10),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),5),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "gev"}),9),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "transverse momentum"}),3),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "hadrons"}),4),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "gev"}),9),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "gev/c"}),3),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "nn"}),80),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "particle"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "p collisions"}),6),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "sqrt"}),88),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "gev/c"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "gev au"}),5),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "p_t"}),5),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "s_nn"}),12),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "p"}),21),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "sqrt"}),6),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "gev"}),12),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),8),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "rhic"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "eta"}),4),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "sqrt"}),9),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "particle"}),8),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "s_nn"}),12),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "particle"}),4),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "phenix experiment"}),4),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "nn"}),65),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "number"}),3),((NgramsTerm {unNgramsTerm = "p_t"},NgramsTerm {unNgramsTerm = "s_nn"}),11),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "not found"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "number"}),4),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "pi ^"}),7),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "spectra"}),3),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "s"}),9),((NgramsTerm {unNgramsTerm = "second part"},NgramsTerm {unNgramsTerm = "thesis"}),4),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "pi ^"}),5),((NgramsTerm {unNgramsTerm = "midrapidity"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "s_nn"}),13),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "s_nn"}),5),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "number"}),4),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "s"}),8),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "p"}),6),((NgramsTerm {unNgramsTerm = "lambda"},NgramsTerm {unNgramsTerm = "rhic"}),4),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "pi ^"}),13),((NgramsTerm {unNgramsTerm = "lambda"},NgramsTerm {unNgramsTerm = "p"}),3),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "pi ^"}),3),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "nn"}),10),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "p_t"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "yields"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "rhic"}),7),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "gev/c"}),6),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "pi ^"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "central collisions"}),3),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "not found"}),7),((NgramsTerm {unNgramsTerm = "s"},NgramsTerm {unNgramsTerm = "s_nn"}),7),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "phenix experiment"}),5),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "energy"}),3),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "s"}),4),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "nn"}),6),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "p"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "number"}),11),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "spectra"}),5),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "s_nn"}),3),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),4),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "nn"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "phenix experiment"}),8),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "not found"}),3),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "not found"}),15),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "s_nn"},NgramsTerm {unNgramsTerm = "yields"}),3),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "s"}),14),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "s"}),18),((NgramsTerm {unNgramsTerm = "not found"},NgramsTerm {unNgramsTerm = "phi"}),4),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "yields"}),3),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "rhic"}),5),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "gev au"}),3),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "phi"}),3),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "s"}),9),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "midrapidity"}),4),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "function"}),6),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "spectra"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "p"}),5),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "p_t"}),9),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "p_t"}),8),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "eta"}),3),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "spectra"}),6),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "ratio"}),5),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "p collisions"}),6),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "measurements"}),23),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "phi"}),10),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "sqrt"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "sqrt"}),25),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "sqrt"}),21),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "particle"}),5),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "rhic"}),10),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "particle"}),4),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "phenix experiment"}),3),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "hadrons"}),8),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "transverse momentum"}),3),((NgramsTerm {unNgramsTerm = "s"},NgramsTerm {unNgramsTerm = "yields"}),5),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "function"}),3),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "s"}),3),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "sqrt"}),9),((NgramsTerm {unNgramsTerm = "elliptic flow"},NgramsTerm {unNgramsTerm = "hadrons"}),3),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),3),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "spectra"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "pi ^"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "phi"}),7),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "p"}),4),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "measurements"}),14),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "ratio"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "suppression"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "s_nn"}),17),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "yields"}),5),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "yields"}),3),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "transverse momentum"}),5),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "d"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "gev"}),69),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "centralities"}),20),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "centrality dependence"}),8),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "rhic"}),6),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "nn"}),99),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "pi ^"}),22),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "nn"}),7),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "p"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "phi"}),6),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),18),((NgramsTerm {unNgramsTerm = "midrapidity"},NgramsTerm {unNgramsTerm = "midrapidity"}),13),((NgramsTerm {unNgramsTerm = "eu"},NgramsTerm {unNgramsTerm = "ph"}),5),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "suppression"}),5),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "gev/c"}),30),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "pi ^"}),4),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "s_nn"}),3),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "measurements"}),58),((NgramsTerm {unNgramsTerm = "yields"},NgramsTerm {unNgramsTerm = "yields"}),15),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "measurements"}),6),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "suppression"}),3),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "p"}),50),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "data"}),44),((NgramsTerm {unNgramsTerm = "sqrt"},NgramsTerm {unNgramsTerm = "sqrt"}),118),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "particle"}),12),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "p"}),5),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),13),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "centrality dependence"}),18),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "gev au"}),14),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "s_nn"}),5),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "function"}),31),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "p collisions"}),20),((NgramsTerm {unNgramsTerm = "eu"},NgramsTerm {unNgramsTerm = "eu"}),9),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "central au"}),14),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "sqrt"}),98),((NgramsTerm {unNgramsTerm = "spectra"},NgramsTerm {unNgramsTerm = "spectra"}),16),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),3),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "nn"}),13),((NgramsTerm {unNgramsTerm = "particle"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "gev"}),125),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "d"}),32),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "nn"}),10),((NgramsTerm {unNgramsTerm = "s_nn"},NgramsTerm {unNgramsTerm = "s_nn"}),20),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),9),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "ratio"}),6),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "centralities"}),28),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "rhic"}),9),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "au"}),101),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "central collisions"}),9),((NgramsTerm {unNgramsTerm = "thesis"},NgramsTerm {unNgramsTerm = "thesis"}),13),((NgramsTerm {unNgramsTerm = "ph"},NgramsTerm {unNgramsTerm = "ph"}),12),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "eta"}),13),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "particle"}),8),((NgramsTerm {unNgramsTerm = "case study"},NgramsTerm {unNgramsTerm = "case study"}),24),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "rhic"}),66),((NgramsTerm {unNgramsTerm = "particle"},NgramsTerm {unNgramsTerm = "particle"}),27),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = 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dependence"},NgramsTerm {unNgramsTerm = "gev"}),14),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "hadrons"}),19),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "centrality dependence"}),12),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "sqrt"}),13),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),3),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "s"}),10),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "pi ^"}),4),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "phi"}),4),((NgramsTerm {unNgramsTerm = "particle"},NgramsTerm {unNgramsTerm = "s_nn"}),3),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "rhic"}),18),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "centralities"}),19),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "s"}),11),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "s_nn"}),19),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "suppression"}),9),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "nn"}),13),((NgramsTerm {unNgramsTerm = "p_t"},NgramsTerm {unNgramsTerm = "phenix experiment"}),8),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "rhic"}),7),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "au collisions"}),102),((NgramsTerm {unNgramsTerm = "transverse momentum"},NgramsTerm {unNgramsTerm = "transverse momentum"}),15),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),3),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "gev/c"}),3),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "ph"}),3),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "ratio"}),4),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "phenix experiment"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "measurements"}),15),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "ratio"}),5),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "phenix experiment"}),25),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "phi"}),12),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "eu"}),4),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),5),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "ratio"}),11),((NgramsTerm {unNgramsTerm = "account"},NgramsTerm {unNgramsTerm = "account"}),17),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "rhic"}),3),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "p"}),12),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "rhic"}),7),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "d"}),15),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "s_nn"}),15),((NgramsTerm {unNgramsTerm = "s"},NgramsTerm {unNgramsTerm = "s"}),118),((NgramsTerm {unNgramsTerm = "p_t"},NgramsTerm {unNgramsTerm = "p_t"}),17),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "transverse momentum"}),3),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "rhic"}),18),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "p_t"}),9),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "sqrt"}),14),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "s"}),10),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "s_nn"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "function"}),13),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "not found"}),63),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "s_nn"}),4),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "phi"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "lambda"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "pi ^"}),3),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "s"}),6),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "ratio"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "energy"}),7),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "p_t"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),4),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),4),((NgramsTerm {unNgramsTerm = "spectra"},NgramsTerm {unNgramsTerm = "suppression"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),12),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "s"}),89),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "spectra"}),5),((NgramsTerm {unNgramsTerm = "lambda"},NgramsTerm {unNgramsTerm = "sqrt"}),7),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "number"}),9),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "gev"}),10),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "s"}),7),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "not found"}),7),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "midrapidity"}),7),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "phenix experiment"}),3),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "s"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "lambda"}),5),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "s"}),22),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "not found"}),8),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "phenix experiment"}),13),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "s"}),8),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),15),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "energy"}),8),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "ratio"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "particle"}),6),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "function"}),13),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "particle"}),4),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "pi ^"}),8),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "yields"}),5),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "pi ^"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "spectra"}),7),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),13),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "lambda"}),5),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "gev"}),14),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "centralities"}),5),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "yields"}),4),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "sqrt"}),12),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "phi"}),3),((NgramsTerm {unNgramsTerm = "spectra"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "suppression"}),3),((NgramsTerm {unNgramsTerm = "not found"},NgramsTerm {unNgramsTerm = "p collisions"}),6),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "gev"}),9),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "gev/c"}),4),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "number"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "spectra"}),9),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "suppression"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "gev/c"}),18),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "rhic"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "elliptic flow"},NgramsTerm {unNgramsTerm = "measurements"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "s"}),5),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "gev au"}),12),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "elliptic flow"}),10),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "suppression"}),5),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "measurements"}),11),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "p collisions"}),11),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "eta"}),4),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "transverse momentum"}),14),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "hadrons"}),11),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "number"}),3),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "s"}),7),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "data"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),7),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "nn"}),67),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "rhic"}),4),((NgramsTerm {unNgramsTerm = "sqrt"},NgramsTerm {unNgramsTerm = "transverse momentum"}),13),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "sqrt"}),11),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "sqrt"}),16),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "p_t"}),6),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "p"}),10),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "p"}),14),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "rhic"}),6),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "p collisions"}),15),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "rhic"}),15),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "transverse momentum"}),7),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "hadrons"}),8),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "suppression"}),6)]
@@ -35,7 +35,7 @@ test :: IO ()
test = hspec $ do
describe "Cross" $ do
let
- (distanceMap,_,_) = doDistanceMap Conditional 0 Weak myCooc
+ (distanceMap,_,_) = doSimilarityMap Conditional 0 Weak myCooc
it "Partition test" $ do
partitions <- spinglass 1 distanceMap
let
diff --git a/src/Gargantext/API/Ngrams/Tools.hs b/src/Gargantext/API/Ngrams/Tools.hs
index 145bc032adc75282f030e2066d1bbdc52c71dbbc..d7d11b8db217b45f53c5ae4941eab5045ce7ded9 100644
--- a/src/Gargantext/API/Ngrams/Tools.hs
+++ b/src/Gargantext/API/Ngrams/Tools.hs
@@ -195,7 +195,36 @@ getCoocByNgrams' f (Diagonal diag) m =
listToCombi identity ks
]
- where ks = HM.keys m
+ where
+ ks = HM.keys m
+
+-- TODO k could be either k1 or k2 here
+getCoocByNgrams'' :: (Hashable k, Ord k, Ord contexts)
+ => Diagonal
+ -> (contextA -> Set contexts, contextB -> Set contexts)
+ -> (HashMap k contextA, HashMap k contextB)
+ -> HashMap (k, k) Int
+getCoocByNgrams'' (Diagonal diag) (f1,f2) (m1,m2) =
+ HM.fromList [( (t1,t2)
+ , maybe 0 Set.size $ Set.intersection
+ <$> (fmap f1 $ HM.lookup t1 m1)
+ <*> (fmap f2 $ HM.lookup t2 m2)
+ )
+ | (t1,t2) <- if diag
+ then
+ [ (x,y) | x <- ks1, y <- ks2, x <= y]
+ -- TODO if we keep a Data.Map here it might be
+ -- more efficient to enumerate all the y <= x.
+ else
+ [ (x,y) | x <- ks1, y <- ks2, x < y]
+ -- TODO check optim
+ -- listToCombi identity ks1
+ ]
+ where
+ ks1 = HM.keys m1
+ ks2 = HM.keys m2
+
+
------------------------------------------
diff --git a/src/Gargantext/API/Node/Update.hs b/src/Gargantext/API/Node/Update.hs
index 4566183107c9349d3b2d0716e424f96652a7837f..3031c9be3b2e880aa34cc24568156392ce68c0fa 100644
--- a/src/Gargantext/API/Node/Update.hs
+++ b/src/Gargantext/API/Node/Update.hs
@@ -64,6 +64,8 @@ data UpdateNodeParams = UpdateNodeParamsList { methodList :: !Method }
| UpdateNodeParamsGraph { methodGraphMetric :: !GraphMetric
, methodGraphClustering :: !PartitionMethod
, methodGraphEdgesStrength :: !Strength
+ , methodGraphNodeType1 :: !NgramsType
+ , methodGraphNodeType2 :: !NgramsType
}
| UpdateNodeParamsTexts { methodTexts :: !Granularity }
@@ -104,7 +106,7 @@ updateNode :: (HasSettings env, FlowCmdM env err m)
-> UpdateNodeParams
-> (JobLog -> m ())
-> m JobLog
-updateNode uId nId (UpdateNodeParamsGraph metric method strength) logStatus = do
+updateNode uId nId (UpdateNodeParamsGraph metric method strength nt1 nt2) logStatus = do
logStatus JobLog { _scst_succeeded = Just 1
, _scst_failed = Just 0
@@ -112,7 +114,7 @@ updateNode uId nId (UpdateNodeParamsGraph metric method strength) logStatus = do
, _scst_events = Just []
}
printDebug "Computing graph: " method
- _ <- recomputeGraph uId nId method (Just metric) (Just strength) True
+ _ <- recomputeGraph uId nId method (Just metric) (Just strength) nt1 nt2 True
printDebug "Graph computed: " method
pure JobLog { _scst_succeeded = Just 2
@@ -273,7 +275,7 @@ instance ToSchema UpdateNodeParams
instance Arbitrary UpdateNodeParams where
arbitrary = do
l <- UpdateNodeParamsList <$> arbitrary
- g <- UpdateNodeParamsGraph <$> arbitrary <*> arbitrary <*> arbitrary
+ g <- UpdateNodeParamsGraph <$> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary
t <- UpdateNodeParamsTexts <$> arbitrary
b <- UpdateNodeParamsBoard <$> arbitrary
elements [l,g,t,b]
diff --git a/src/Gargantext/Core/Viz/Graph.hs b/src/Gargantext/Core/Viz/Graph.hs
index aba000c57815bd028bd0c7bad9a873453751ebba..28dd22eae931db092e3ea02b1ad432f96dec49da 100644
--- a/src/Gargantext/Core/Viz/Graph.hs
+++ b/src/Gargantext/Core/Viz/Graph.hs
@@ -17,20 +17,20 @@ module Gargantext.Core.Viz.Graph
import Data.ByteString.Lazy as DBL (readFile, writeFile)
import Data.HashMap.Strict (HashMap, lookup)
+import Data.HashSet (HashSet)
import Data.Text (pack)
import GHC.IO (FilePath)
-
-import qualified Data.Aeson as DA
-import qualified Data.Text as T
-import qualified Text.Read as T
-
import Gargantext.API.Ngrams.Types (NgramsTerm(..), NgramsRepoElement(..), mSetToList)
import Gargantext.Core.Methods.Similarities (GraphMetric)
import Gargantext.Core.Types (ListId)
import Gargantext.Database.Admin.Types.Hyperdata.Prelude
import Gargantext.Database.Admin.Types.Node (NodeId)
+import Gargantext.Database.Schema.Ngrams (NgramsType(..))
import Gargantext.Prelude
-
+import qualified Data.Aeson as DA
+import qualified Data.HashSet as HashSet
+import qualified Data.Text as Text
+import qualified Text.Read as Text
data TypeNode = Terms | Unknown
deriving (Show, Generic)
@@ -84,7 +84,34 @@ instance ToSchema LegendField where
declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_lf_")
makeLenses ''LegendField
+
+---------------------------------------------------------------
+data Partite = Partite { _partite_nodes :: HashSet NgramsTerm
+ , _partite_type :: NgramsType
+ }
+ deriving (Show, Generic)
+$(deriveJSON (unPrefix "_partite_") ''Partite)
+instance ToSchema Partite where
+ declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_partite_")
+makeLenses ''Partite
+
+
+data MultiPartite = MultiPartite { _multipartite_data1 :: Partite
+ , _multipartite_data2 :: Partite
+ }
+ deriving (Show, Generic)
+$(deriveJSON (unPrefix "_multipartite_") ''MultiPartite)
+instance ToSchema MultiPartite where
+ declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_multipartite_")
+makeLenses ''MultiPartite
+
+defaultMultipartite :: MultiPartite
+defaultMultipartite = MultiPartite a a
+ where
+ a = Partite HashSet.empty NgramsTerms
+
---------------------------------------------------------------
+
type Version = Int
data ListForGraph =
ListForGraph { _lfg_listId :: ListId
@@ -117,6 +144,7 @@ data GraphMetadata =
, _gm_legend :: [LegendField] -- legend of the Graph
, _gm_list :: ListForGraph
, _gm_startForceAtlas :: Bool
+ -- , _gm_nodesTypes :: Maybe (NgramsType, NgramsType)
-- , _gm_version :: Int
}
deriving (Show, Generic)
@@ -248,7 +276,7 @@ graphV3ToGraph (GraphV3 links nodes) = Graph { _graph_nodes = map nodeV32node no
linkV32edge n (EdgeV3 eo_s' eo_t' eo_w') =
Edge { edge_source = cs $ show eo_s'
, edge_target = cs $ show eo_t'
- , edge_weight = (T.read $ T.unpack eo_w') :: Double
+ , edge_weight = (Text.read $ Text.unpack eo_w') :: Double
, edge_confluence = 0.5
, edge_id = cs $ show n }
@@ -258,7 +286,7 @@ graphV3ToGraphWithFiles g1 g2 = do
-- GraphV3 <- IO Fichier
graph <- DBL.readFile g1
let newGraph = case DA.decode graph :: Maybe GraphV3 of
- Nothing -> panic (T.pack "no graph")
+ Nothing -> panic (Text.pack "no graph")
Just new -> new
DBL.writeFile g2 (DA.encode $ graphV3ToGraph newGraph)
diff --git a/src/Gargantext/Core/Viz/Graph/API.hs b/src/Gargantext/Core/Viz/Graph/API.hs
index b58d9a00eaada56143bcf7b7824287eb0e522817..4f17285e1a341ac43d430352eb56ab427f5bf61c 100644
--- a/src/Gargantext/Core/Viz/Graph/API.hs
+++ b/src/Gargantext/Core/Viz/Graph/API.hs
@@ -107,7 +107,7 @@ getGraph _uId nId = do
let defaultMetric = Order1
let defaultPartitionMethod = Spinglass
let defaultEdgesStrength = Strong
- graph' <- computeGraph cId defaultPartitionMethod (withMetric defaultMetric) defaultEdgesStrength NgramsTerms repo
+ graph' <- computeGraph cId defaultPartitionMethod (withMetric defaultMetric) defaultEdgesStrength (NgramsTerms, NgramsTerms) repo
mt <- defaultGraphMetadata cId "Title" repo defaultMetric defaultEdgesStrength
let
graph'' = set graph_metadata (Just mt) graph'
@@ -127,9 +127,11 @@ recomputeGraph :: FlowCmdM env err m
-> PartitionMethod
-> Maybe GraphMetric
-> Maybe Strength
+ -> NgramsType
+ -> NgramsType
-> Bool
-> m Graph
-recomputeGraph _uId nId method maybeSimilarity maybeStrength force = do
+recomputeGraph _uId nId method maybeSimilarity maybeStrength nt1 nt2 force = do
nodeGraph <- getNodeWith nId (Proxy :: Proxy HyperdataGraph)
let
graph = nodeGraph ^. node_hyperdata . hyperdataGraph
@@ -157,7 +159,7 @@ recomputeGraph _uId nId method maybeSimilarity maybeStrength force = do
let v = repo ^. unNodeStory . at listId . _Just . a_version
let computeG mt = do
- !g <- computeGraph cId method similarity strength NgramsTerms repo
+ !g <- computeGraph cId method similarity strength (nt1,nt2) repo
let g' = set graph_metadata mt g
_nentries <- updateHyperdata nId (HyperdataGraph (Just g') camera)
pure g'
@@ -174,31 +176,53 @@ recomputeGraph _uId nId method maybeSimilarity maybeStrength force = do
pure $ trace "[G.V.G.API] Graph exists, recomputing" g
+-- TODO remove repo
computeGraph :: FlowCmdM env err m
=> CorpusId
-> PartitionMethod
-> Similarity
-> Strength
- -> NgramsType
+ -> (NgramsType, NgramsType)
-> NodeListStory
-> m Graph
-computeGraph corpusId method similarity strength nt repo = do
+computeGraph corpusId method similarity strength (nt1,nt2) repo = do
+ -- Getting the Node parameters
lId <- defaultList corpusId
lIds <- selectNodesWithUsername NodeList userMaster
- let ngs = filterListWithRoot [MapTerm]
- $ mapTermListRoot [lId] nt repo
- -- Removing the hapax (ngrams with 1 cooc)
- !myCooc <- HashMap.filter (>1)
- <$> getCoocByNgrams (Diagonal True)
- <$> groupNodesByNgrams ngs
- <$> getContextsByNgramsOnlyUser corpusId (lIds <> [lId]) nt (HashMap.keys ngs)
-
- graph <- liftBase $ cooc2graphWith method similarity 0 strength myCooc
+ -- Getting the Ngrams to compute with and grouping it according to the lists
+ let
+ groupedContextsByNgrams nt corpusId' (lists_master, lists_user) = do
+ let
+ ngs = filterListWithRoot [MapTerm] $ mapTermListRoot lists_user nt repo
+ groupNodesByNgrams ngs <$> getContextsByNgramsOnlyUser corpusId'
+ (lists_user <> lists_master) nt (HashMap.keys ngs)
+
+ -- Optim if nt1 == nt2 : do not compute twice
+ (m1,m2) <- do
+ m1 <- groupedContextsByNgrams nt1 corpusId (lIds, [lId])
+ if nt1 == nt2
+ then
+ pure (m1,m1)
+ else do
+ m2 <- groupedContextsByNgrams nt2 corpusId (lIds, [lId])
+ pure (m1,m2)
+
+ -- Removing the hapax (ngrams with 1 cooc)
+ let !myCooc = HashMap.filter (>1)
+ $ getCoocByNgrams'' (Diagonal True) (identity, identity) (m1,m2)
+
+ -- TODO MultiPartite Here
+ graph <- liftBase
+ $ cooc2graphWith method (MultiPartite (Partite (HashMap.keysSet m1) nt1)
+ (Partite (HashMap.keysSet m2) nt2)
+ )
+ similarity 0 strength myCooc
pure graph
+
defaultGraphMetadata :: HasNodeError err
=> CorpusId
-> Text
@@ -240,6 +264,7 @@ graphAsync u n =
-- -> NodeId
-- -> (JobLog -> GargNoServer ())
-- -> GargNoServer JobLog
+-- TODO get Graph Metadata to recompute
graphRecompute :: FlowCmdM env err m
=> UserId
-> NodeId
@@ -251,7 +276,7 @@ graphRecompute u n logStatus = do
, _scst_remaining = Just 1
, _scst_events = Just []
}
- _g <- recomputeGraph u n Spinglass Nothing Nothing False
+ _g <- recomputeGraph u n Spinglass Nothing Nothing NgramsTerms NgramsTerms False
pure JobLog { _scst_succeeded = Just 1
, _scst_failed = Just 0
, _scst_remaining = Just 0
@@ -306,7 +331,7 @@ recomputeVersions :: FlowCmdM env err m
=> UserId
-> NodeId
-> m Graph
-recomputeVersions uId nId = recomputeGraph uId nId Spinglass Nothing Nothing False
+recomputeVersions uId nId = recomputeGraph uId nId Spinglass Nothing Nothing NgramsTerms NgramsTerms False
------------------------------------------------------------
graphClone :: UserId
diff --git a/src/Gargantext/Core/Viz/Graph/Tools.hs b/src/Gargantext/Core/Viz/Graph/Tools.hs
index f43ef6b15958f780fd68b476117dc86d0b4c5684..195c6d5cc341de7af26bf5ad18782bfefb70ab9f 100644
--- a/src/Gargantext/Core/Viz/Graph/Tools.hs
+++ b/src/Gargantext/Core/Viz/Graph/Tools.hs
@@ -30,6 +30,7 @@ import Gargantext.Core.Viz.Graph.Bridgeness (bridgeness, Partitions, ToComId(..)
import Gargantext.Core.Viz.Graph.Index (createIndices, toIndex, map2mat, mat2map, Index, MatrixShape(..))
import Gargantext.Core.Viz.Graph.Tools.IGraph (mkGraphUfromEdges, spinglass)
import Gargantext.Core.Viz.Graph.Tools.Infomap (infomap)
+import Gargantext.Database.Schema.Ngrams (NgramsType(..))
import Gargantext.Core.Viz.Graph.Utils (edgesFilter, nodesFilter)
import Gargantext.Prelude
import Graph.Types (ClusterNode)
@@ -40,6 +41,7 @@ import qualified Data.HashMap.Strict as HashMap
import qualified Data.List as List
import qualified Data.Map as Map
import qualified Data.Set as Set
+import qualified Data.HashSet as HashSet
import qualified Data.Text as Text
import qualified Data.Vector.Storable as Vec
import qualified Graph.BAC.ProxemyOptim as BAC
@@ -87,6 +89,7 @@ cooc2graph' distance threshold myCooc
-- coocurrences graph computation
cooc2graphWith :: PartitionMethod
+ -> MultiPartite
-> Similarity
-> Threshold
-> Strength
@@ -100,12 +103,13 @@ cooc2graphWith Infomap = cooc2graphWith' (infomap "--silent --two-level -N2")
cooc2graphWith' :: ToComId a
=> Partitions a
+ -> MultiPartite
-> Similarity
-> Threshold
-> Strength
-> HashMap (NgramsTerm, NgramsTerm) Int
-> IO Graph
-cooc2graphWith' doPartitions similarity threshold strength myCooc = do
+cooc2graphWith' doPartitions multi similarity threshold strength myCooc = do
let (distanceMap, diag, ti) = doSimilarityMap similarity threshold strength myCooc
distanceMap `seq` diag `seq` ti `seq` return ()
@@ -130,7 +134,7 @@ cooc2graphWith' doPartitions similarity threshold strength myCooc = do
n' = Set.size $ Set.fromList $ as <> bs
!bridgeness' = bridgeness (fromIntegral nodesApprox) partitions distanceMap
!confluence' = BAC.computeConfluences 3 (Map.keys bridgeness') True
- pure $ data2graph ti diag bridgeness' confluence' partitions
+ pure $ data2graph multi ti diag bridgeness' confluence' partitions
type Reverse = Bool
@@ -187,14 +191,26 @@ doSimilarityMap Conditional threshold strength myCooc = (distanceMap, toIndex ti
type Occurrences = Int
-data2graph :: ToComId a
- => Map NgramsTerm Int
+multiPartiteWith :: MultiPartite -> NgramsTerm -> TypeNode
+multiPartiteWith (MultiPartite (Partite s1 t1) (Partite _s2 t2)) t =
+ if HashSet.member t s1
+ then typeNode t1
+ else typeNode t2
+
+typeNode :: NgramsType -> TypeNode
+typeNode NgramsTerms = Terms
+typeNode _ = Unknown
+
+
+data2graph :: ToComId a
+ => MultiPartite
+ -> Map NgramsTerm Int
-> Map (Int, Int) Occurrences
-> Map (Int, Int) Double
-> Map (Int, Int) Double
-> [a]
-> Graph
-data2graph labels' occurences bridge conf partitions = Graph { _graph_nodes = nodes
+data2graph multi labels' occurences bridge conf partitions = Graph { _graph_nodes = nodes
, _graph_edges = edges
, _graph_metadata = Nothing
}
@@ -202,7 +218,7 @@ data2graph labels' occurences bridge conf partitions = Graph { _graph_nodes = no
nodes = map (setCoord ForceAtlas labels bridge)
[ (n, Node { node_size = maybe 0 identity (Map.lookup (n,n) occurences)
- , node_type = Terms -- or Unknown
+ , node_type = multiPartiteWith multi l
, node_id = cs (show n)
, node_label = unNgramsTerm l
, node_x_coord = 0
diff --git a/src/Gargantext/Database/Schema/Ngrams.hs b/src/Gargantext/Database/Schema/Ngrams.hs
index 8f6f00621f2c868af367255bbcb73232f3471c58..37c0b83167736ac0c1953fcee0d37f7c1cb54e06 100644
--- a/src/Gargantext/Database/Schema/Ngrams.hs
+++ b/src/Gargantext/Database/Schema/Ngrams.hs
@@ -23,20 +23,21 @@ module Gargantext.Database.Schema.Ngrams
import Codec.Serialise (Serialise())
import Control.Lens (over)
import Control.Monad (mzero)
-import Data.Maybe (fromMaybe)
-import Data.HashMap.Strict (HashMap)
-import Data.Hashable (Hashable)
import Data.Aeson
import Data.Aeson.Types (toJSONKeyText)
+import Data.HashMap.Strict (HashMap)
+import Data.Hashable (Hashable)
import Data.Map (fromList, lookup)
-import Database.PostgreSQL.Simple.FromField (returnError, ResultError(..))
+import Data.Maybe (fromMaybe)
import Data.Text (Text, splitOn, pack, strip)
+import Database.PostgreSQL.Simple.FromField (returnError, ResultError(..))
+import Gargantext.Core (HasDBid(..))
import Gargantext.Core.Types (TODO(..), Typed(..))
+import Gargantext.Database.Schema.Prelude
+import Gargantext.Database.Types
import Gargantext.Prelude
import Servant (FromHttpApiData(..), Proxy(..), ToHttpApiData(..))
-import Gargantext.Core (HasDBid(..))
-import Gargantext.Database.Types
-import Gargantext.Database.Schema.Prelude
+import Test.QuickCheck (elements)
import Text.Read (read)
import qualified Data.ByteString.Char8 as B
import qualified Data.HashMap.Strict as HashMap
@@ -84,10 +85,19 @@ ngramsTable = Table "ngrams" (pNgramsDb NgramsDB { _ngrams_id = optionalTable
-- ngrams in text fields of documents has Terms Type (i.e. either title or abstract)
data NgramsType = Authors | Institutes | Sources | NgramsTerms
deriving (Eq, Show, Read, Ord, Enum, Bounded, Generic)
+
instance Serialise NgramsType
instance FromJSON NgramsType
+ where
+ parseJSON (String "Authors") = pure Authors
+ parseJSON (String "Institutes") = pure Institutes
+ parseJSON (String "Sources") = pure Sources
+ parseJSON (String "Terms") = pure NgramsTerms
+ parseJSON _ = mzero
+
instance FromJSONKey NgramsType where
fromJSONKey = FromJSONKeyTextParser (parseJSON . String)
+
instance ToJSON NgramsType
instance ToJSONKey NgramsType where
toJSONKey = toJSONKeyText (pack . show)
@@ -97,6 +107,9 @@ instance ToHttpApiData NgramsType where
toUrlPiece = pack . show
instance ToParamSchema NgramsType where
toParamSchema _ = toParamSchema (Proxy :: Proxy TODO)
+instance Arbitrary NgramsType where
+ arbitrary = elements [ minBound .. maxBound ]
+
-- map NgramsType to its assigned id
instance FromField NgramsType where
fromField fld mdata =