Merge branch 'unstable' of ssh://delanoe.org:1979/gargantext into unstable

.gitignore

@@ -4,3 +4,4 @@ parsing/Taggers/treetagger/
 *.pyc
 data_samples
 VENV
+local_settings.py

analysis/diachronic_specificity.py

 import sqlalchemy
-from gargantext_web import api, db
+from gargantext_web import api
+from gargantext_web.db import *
+
 from node import models
 from sqlalchemy import create_engine
 from sqlalchemy.sql import func

annotations/.bowerrc

+{
+  "directory": "static/bower_components"
+}

annotations/.gitignore

+static/bower_components/

annotations/.jshintrc

+{
+  "globalstrict": true,
+  "globals": {
+    "angular": false,
+    "describe": false,
+    "it": false,
+    "expect": false,
+    "beforeEach": false,
+    "afterEach": false,
+    "module": false,
+    "inject": false
+  }
+}
\ No newline at end of file

annotations/.lvimrc

+set tabstop=4
+set shiftwidth=4
+set expandtab
+set softtabstop=4

annotations/README.md

+# Gargantext Annotations web application
+
+We also use a number of node.js tools to initialize and test. You must have node.js and
+its package manager (npm) installed.  You can get them from [http://nodejs.org/](http://nodejs.org/).
+
+## Preview only
+
+Activate your virtualenv and run a simple http server
+
+```
+workon gargantext
+python3 -m http.server
+```
+or :
+
+```
+npm start
+```
+
+Now browse to the app at `http://localhost:8000/app/index.html`.
+
+## Install development tools and dependencies
+
+
+We have two kinds of dependencies in this project: tools and angular framework code.  The tools help
+us manage and test the application.
+
+* We get the tools we depend upon via `npm`, the [node package manager][npm].
+* We get the angular code via `bower`, a [client-side code package manager][bower].
+
+We have preconfigured `npm` to automatically run `bower` so we can simply do:
+
+```
+npm install
+```
+
+Behind the scenes this will also call `bower install`.  You should find that you have two new
+folders in your project.
+
+* `node_modules` - contains the npm packages for the tools we need
+* `app/bower_components` - contains the angular framework files
+
+*Note that the `bower_components` folder would normally be installed in the root folder but
+angular-seed changes this location through the `.bowerrc` file.  Putting it in the app folder makes
+it easier to serve the files by a webserver.*
+
+
+## Directory Layout
+
+
+This will be adapted to fit the django API code as well. For now, the generic layout is :
+
+```
+app/                    --> all of the source files for the application
+  app.css               --> default stylesheet
+  components/           --> all app specific modules
+  view1/                --> the view1 view template and logic
+    view1.html            --> the partial template
+    view1.js              --> the controller logic
+    view1_test.js         --> tests of the controller
+  app.js                --> main application module
+  index.html            --> app layout file (the main html template file of the app)
+```
+
+
+# Conception and workflow documentation
+
+## TODO : à traduire en anglais
+
+Cette API permet d'éditer les mots-clés miamlistés ou stoplistés associé à un document affiché dans un cadre d'une page web permettant de naviguer à travers un ensemble de document d'un corpus.
+
+### Architecture
+
+- Templates : Django et Angular.js ?
+- Communication entre les modules : évènements Angular ($emit et $broadcast)
+- Pas de routage entre différentes URL, car ici une seule vue principale basée sur le template django corpus.html
+- Modèle d'abstraction de données : côté client (Angular Scopes) et côté serveur (Django Model et SQLAlchemy)
+- Composants : TODO lister et décrire les composants client et serveur
+- Structure de l'application : organisation du client et du serveur
+- Style : Bootstrap et un thème spécifique choisi pour Gargantext
+- Gestion des dépendances :
+  - bower, npm pour le développement web et les tests côté client
+  - pip requirements pour le côté serveur
+
+## Quelles actions execute l'API ?
+
+- afficher le titre, les auteurs, le résumé, la date de publication et le corps d'un document.
+- lecture des mots-clés miamlistés associés à un document (dans le texte et hors du texte).
+- lecture des mots-clés stoplistés associés à un document (dans le texte et hors du texte).
+- lecture des documents ayant le plus de mots-clés miamlistés associés identiques pour afficher une liste de liens vers de nouveaux documents
+- lecture du groupe de mots-clés auquel appartient un mot-clé (synonymes, différentes formes)
+- modification du groupe de mots-clés auquel appartient un mot-clé donné
+
+On désigne par mot-clé un NGram.
+
+## Schéma de l'API
+
+Liste des endpoints
+
+### Lecture des données
+
+- POST '^api/nodes/(\d+)/children/queries$' : liste des NGrams d'un document avec la possibilité de filtrer par NGrams
+- GET '^api/nodes$' : liste des identifiants de mots-clés filtrés par type (NGram ou autre) pour un identifiant de parent (Document ou autre)
+- GET '^api/nodes/(\d+)/ngrams$': liste des termes des mots-clés associés à un Document parent, filtrés par termes
+- GET ^api/nodes/(\d+)/children/metadata$ : liste des metadata d'un Node, c'est-à-dire :
+  - pour un document : titre, auteur, etc
+  - pour un NGram : stoplisté ou miamlisté ?
+
+### Écriture des données
+
+TODO
+
+## Workflow
+
+Nous nous fixons sur cette documentation et spécification de l'API
+
+- en parallèle : développement de l'API et prototypage de l'interface
+- le prototypage de l'interface peut modifier l'API si besoin
+
+### Spécifications des fondations de l'interface
+
+- résolutions d'écran
+- browsers
+- langue: english only
+- SEO: aucun ?
+- collaboratif : oui, les modifications d'un autre utilisateurs seront notifiées à tous les utilisateurs présent sur le même corpus de documents
+- fonctionne offline ?
+
+### Working process
+
+- follow board is updated regularly (https://trello.com/b/96ItkDBS/gargantext-miamlists-and-stoplists)[on Trello]
+
+- calendrier prévisionnel: TODO
+- interactions entre les acteurs: emails
+- git, branches : branche "elias", `git pull --rebase origin master` réguliers
+- prévision des revues de code et de l'interface : TODO
+
+### Plateforme
+
+- Python 3.4
+- Django 1.6
+- Postgresql 9.3 + HSTORE
+- SQLAlchemy
+- Bootstrap CSS
+- Angular.js
+
+### Outils de qualité de code
+
+- pylint
+- jshint (voir .jshintrc)
+- indentations : 4 espaces (voir .lvimrc)
+- nettoyage automatique des espaces en fin de ligne
+
+## Tests
+
+There are two kinds of tests possible : Unit tests and End to End tests.
+
+- côté client : étudier karma.js et protractor
+- définir la stratégie de tests : TODO
+
+## Déploiement
+
+- définir le processus de déploiement
+- prévoir un système de monitoring des erreurs du serveur une fois en ligne
+    - Sentry ?
+
+
+## Updating the web application
+
+Previously we recommended that you merge in changes to angular-seed into your own fork of the project.
+Now that the angular framework library code and tools are acquired through package managers (npm and
+bower) you can use these tools instead to update the dependencies.
+
+You can update the tool dependencies by running:
+
+```
+npm update
+```
+
+This will find the latest versions that match the version ranges specified in the `package.json` file.
+
+You can update the Angular dependencies by running:
+
+```
+bower update
+```
+
+This will find the latest versions that match the version ranges specified in the `bower.json` file.
+
+
+
+### Running the App in Production
+
+This really depends on how complex your app is and the overall infrastructure of your system, but
+the general rule is that all you need in production are all the files under the `app/` directory.
+Everything else should be omitted.
+
+Angular apps are really just a bunch of static html, css and js files that just need to be hosted
+somewhere they can be accessed by browsers.
+
+If your Angular app is talking to the backend server via xhr or other means, you need to figure
+out what is the best way to host the static files to comply with the same origin policy if
+applicable. Usually this is done by hosting the files by the backend server or through
+reverse-proxying the backend server(s) and webserver(s).
+
+
+##
+
+[AngularJS]: http://angularjs.org/
+[git]: http://git-scm.com/
+[bower]: http://bower.io
+[npm]: https://www.npmjs.org/
+[node]: http://nodejs.org
+[protractor]: https://github.com/angular/protractor
+[jasmine]: http://jasmine.github.io
+[karma]: http://karma-runner.github.io
+[http-server]: https://github.com/nodeapps/http-server

annotations/bower.json

+{
+  "name": "annotations",
+  "description": "Annotations for Gargantext",
+  "version": "0.0.1",
+  "license": "GPLv3",
+  "private": true,
+  "dependencies": {
+    "angular": "~1.2.x",
+    "angular-loader": "~1.2.x",
+    "angular-resource": "~1.2.x",
+    "bootstrap": "~3.x"
+  },
+  "resolutions": {
+    "angular": "~1.2.x"
+  }
+}

annotations/package.json

+{
+  "name": "gargantext-annotations",
+  "private": true,
+  "version": "0.0.1",
+  "description": "Annotations for gargantext",
+  "license": "GPLv3",
+  "devDependencies": {
+    "karma": "~0.10",
+    "protractor": "^1.1.1",
+    "http-server": "^0.6.1",
+    "bower": "^1.3.1",
+    "shelljs": "^0.2.6",
+    "karma-junit-reporter": "^0.2.2"
+  },
+  "scripts": {
+    "postinstall": "bower install",
+
+    "prestart": "npm install",
+    "start": "http-server -a localhost -p 8000 -c-1",
+
+    "pretest": "npm install",
+    "test": "karma start karma.conf.js",
+    "test-single-run": "karma start karma.conf.js  --single-run",
+
+    "preupdate-webdriver": "npm install",
+    "update-webdriver": "webdriver-manager update",
+
+    "preprotractor": "npm run update-webdriver",
+    "protractor": "protractor e2e-tests/protractor.conf.js",
+
+    "update-index-async": "node -e \"require('shelljs/global'); sed('-i', /\\/\\/@@NG_LOADER_START@@[\\s\\S]*\\/\\/@@NG_LOADER_END@@/, '//@@NG_LOADER_START@@\\n' + sed(/sourceMappingURL=angular-loader.min.js.map/,'sourceMappingURL=bower_components/angular-loader/angular-loader.min.js.map','static/bower_components/angular-loader/angular-loader.min.js') + '\\n//@@NG_LOADER_END@@', 'templates/annotations/demo.html');\""
+  }
+}

annotations/static/annotations/app.css

+/* app css stylesheet */
+
+.delete-keyword, .occurrences {
+    vertical-align: super;
+    font-size: 70%;
+}
+
+.delete-keyword {
+    cursor: pointer;
+}
+
+.center-block {
+  display: block;
+  margin-left: auto;
+  margin-right: auto;
+}
+
+.keyword-inline {
+  display: inline;
+}
+
+.keyword-inline:hover {
+  text-decoration: none;
+}
+
+.nav-tabs {
+  border-bottom: none;
+}
+
+.miamword {
+  color: black;
+  background-color: rgba(60, 118, 61, 0.5);
+  cursor: pointer;
+}
+
+.stopword {
+  color: black;
+  background-color: rgba(169, 68, 66, 0.2);
+  cursor: pointer;
+}
+
+.global-stopword {
+  color: black;
+  background-color: rgba(169, 68, 66, 0.05);
+  cursor: pointer;
+}
+
+.main-panel, .text-panel, .words-panel {
+  height: 400px;
+  margin: 10px 0px;
+}
+
+.text-panel {
+  overflow-y: auto;
+}
+
+.words-list {
+  margin-bottom: 5px;
+  height: 250px;
+}
+
+.keyword-container {
+  max-width: 200px;
+}
+
+.keyword {
+  word-break: break-all;
+}
+
+.list-group-item {
+  display: inline-block;
+  float: left;
+  padding: 5px;
+}
+
+.words-pagination {
+  margin: 5px 0;
+}
+
+.text-panel p, .text-panel h3 {
+  -webkit-transition: all 0.25s linear;
+  -moz-transition: all 0.25s linear;
+  -ms-transition: all 0.25s linear;
+  -o-transition: all 0.25s linear;
+  transition: all 0.25s linear;
+}
+
+.selection {
+  color: #aaa;
+}
+::selection {
+  color: black;
+  background-color: rgba(0, 0, 0, 0.4);
+}
+
+.noselection {
+    -webkit-touch-callout: none;
+    -webkit-user-select: none;
+    -khtml-user-select: none;
+    -moz-user-select: none;
+    -ms-user-select: none;
+    user-select: none;
+}
+
+.selection-menu {
+  display: none;
+  position: absolute;
+  color: #394141;
+  background: white;
+  font-size: 0.8em;
+  font-weight: 600;
+  -webkit-box-shadow: 1px 1px 2px rgba(0, 0, 0, 0.5);
+  -moz-box-shadow: 1px 1px 2px rgba(0, 0, 0, 0.5);
+  box-shadow: 1px 1px 2px rgba(0, 0, 0, 0.5);
+}
+
+/*.selection-menu:before {
+  content: '';
+  position: absolute;
+  left: -10px;
+  top: 0px;
+  border-right: solid white 10px;
+  border-top: solid transparent 8px;
+  border-bottom: solid transparent 8px;
+}*/
+
+.selection-menu ul {
+  list-style: none;
+  margin: 0;
+  padding: 0;
+}
+
+.selection-menu li {
+  border-bottom: solid thin #CCC;
+  padding: 10px;
+  white-space: nowrap;
+}
+
+.selection-menu [class*="glyphicon"] {
+  min-width: 25px;
+  display: inline-block;
+  text-align: center;
+  border-right: solid thin #CCC;
+  margin-right: 5px;
+}

annotations/static/annotations/app.js

+(function () {
+  'use strict';
+
+  var S = window.STATIC_URL;
+
+  window.annotationsApp = angular.module('annotationsApp', ['annotationsAppHttp']);
+
+  window.annotationsApp.config(function($interpolateProvider) {
+    $interpolateProvider.startSymbol('{[{');
+    $interpolateProvider.endSymbol('}]}');
+  });
+
+  window.annotationsApp.directive('keywordTemplate', function () {
+    return {
+      templateUrl: function ($element, $attributes) {
+        return S + 'annotations/keyword_tpl.html';
+      }
+    };
+  });
+
+  window.annotationsApp.controller('ExtraAnnotationController', ['$scope', '$rootScope', '$element', 'NgramHttpService',
+    function ($scope, $rootScope, $element, NgramHttpService) {
+    // TODO use the tooltip ?
+    $scope.onDeleteClick = function () {
+      NgramHttpService.delete($scope.keyword, $rootScope);
+    };
+  }]);
+
+  window.annotationsApp.controller('AnnotationController', ['$scope', '$rootScope', '$element', function ($scope, $rootScope, $element) {
+    // FIXME maybe use angular.copy of the annotation
+    var keyword = _.find(
+      $rootScope.annotations,
+      function(annotation) { return annotation.uuid.toString() === $element[0].getAttribute('uuid').toString(); }
+    );
+    // attach the annotation scope dynamically
+    if (keyword) {
+      $scope.keyword = keyword;
+    }
+
+    $scope.onClick = function(e) {
+      $rootScope.$emit("positionAnnotationMenu", e.pageX, e.pageY);
+      $rootScope.$emit("toggleAnnotationMenu", $scope.keyword);
+      e.stopPropagation();
+    };
+  }]);
+
+  window.annotationsApp.directive('selectionTemplate', function () {
+    return {
+      templateUrl: function ($element, $attributes) {
+        return S + 'annotations/selection_tpl.html';
+      }
+    };
+  });
+
+  window.annotationsApp.controller('AnnotationMenuController', ['$scope', '$rootScope', '$element', '$timeout', 'NgramHttpService',
+    function ($scope, $rootScope, $element, $timeout, NgramHttpService) {
+    /*
+    * Universal text selection
+    */
+    function getSelected() {
+        if (window.getSelection) {
+            return window.getSelection();
+        }
+        else if (document.getSelection) {
+            return document.getSelection();
+        }
+        else {
+            var selection = document.selection && document.selection.createRange();
+            if (selection.text) {
+                return selection.text;
+            }
+            return false;
+        }
+        return false;
+    }
+
+    var selection = getSelected();
+
+    function toggleSelectionHighlight(text) {
+      if (text.trim() !== "") {
+        $(".text-panel").addClass("selection");
+      } else {
+        $(".text-panel").removeClass("selection");
+      }
+    }
+
+    function toggleMenu(context, annotation){
+      $timeout(function() {
+        $scope.$apply(function() {
+          if (angular.isObject(annotation)) {
+            $scope.level = angular.copy(annotation.level);
+            $scope.category = angular.copy(annotation.category);
+            // used in onClick
+            $scope.selection_text = angular.copy(annotation);
+
+            if ($scope.category == "miamlist") {
+              $scope.local_miamlist = false;
+              $scope.global_stoplist = true;
+              $scope.local_stoplist = true;
+            } else if ($scope.category == "stoplist") {
+
+              if ($scope.level == "local") {
+                $scope.local_stoplist = false;
+                $scope.global_stoplist = true;
+              }
+              if ($scope.level == "global") {
+                $scope.global_stoplist = false;
+                $scope.local_stoplist = true;
+              }
+              $scope.local_miamlist = true;
+            }
+            // show menu
+            $element.fadeIn(100);
+          }
+          else if (annotation.trim() !== "") {
+            $scope.selection_text = angular.copy(annotation);
+            $scope.level = "Create from current selection";
+            $scope.category = null;
+            $scope.local_miamlist = true;
+            $scope.local_stoplist = true;
+            $scope.global_stoplist = true;
+            // show menu
+            $element.fadeIn(100);
+          } else {
+            // close menu
+            $element.fadeOut(100);
+          }
+        });
+      });
+    }
+    var elt = $(".text-panel")[0];
+    var pos = $(".text-panel").position();
+
+    function positionElement(context, x, y) {
+      // todo try bootstrap popover component
+      $element.css('left', x + 10);
+      $element.css('top', y + 10);
+    }
+
+    function positionMenu(e) {
+      positionElement(null, e.pageX, e.pageY);
+    }
+
+    // TODO is mousedown necessary ?
+    $(".text-panel").mousedown(function(){
+      $(".text-panel").mousemove(positionMenu);
+    });
+
+    $(".text-panel").mouseup(function(){
+      $(".text-panel").unbind("mousemove", positionMenu);
+      toggleSelectionHighlight(selection.toString().trim());
+      toggleMenu(null, selection.toString().trim());
+    });
+
+    $(".text-panel").delegate(':not("#selection")', "click", function(e) {
+      if ($(e.target).hasClass("keyword-inline")) return;
+      positionMenu(e);
+      toggleSelectionHighlight(selection.toString().trim());
+      toggleMenu(null, selection.toString().trim());
+    });
+
+    $rootScope.$on("positionAnnotationMenu", positionElement);
+    $rootScope.$on("toggleAnnotationMenu", toggleMenu);
+
+    $scope.onClick = function($event, action, category, level) {
+      if (angular.isObject($scope.selection_text)) {
+        // change the status of an existing Ngram
+        $scope.selection_text.category = category;
+        $scope.selection_text.level = level;
+
+        NgramHttpService[action](
+          {
+            'listId': $rootScope.listId,
+            'ngramId': $scope.selection_text.uuid
+          },
+          {'annotation': $scope.selection_text}
+        );
+      } else if ($scope.selection_text.trim() !== "") {
+        // new annotation from selection
+        NgramHttpService.post(
+          {
+            'listId': $rootScope.listId
+          },
+          {'annotation' : {'text': $scope.selection_text.trim(), 'category': category, 'level': level}}
+        );
+      }
+      // hide selection highlighted text and the menu
+      $(".text-panel").removeClass("selection");
+      $element.fadeOut(100);
+    };
+
+  }]);
+
+  window.annotationsApp.controller('IntraTextController', ['$scope', '$rootScope', '$compile', 'NgramHttpService',
+    function ($scope, $rootScope, $compile, NgramHttpService) {
+
+    $scope.extra_stoplist = [];
+    $scope.extra_miamlist = [];
+    $scope.currentStopPage = 0;
+    $scope.currentMiamPage = 0;
+    $scope.pageSize = 15;
+    var counter = 0;
+
+    /*
+    * Replace the text by and html template
+    */
+    function replaceTextByTemplate(text, annotation, template, pattern) {
+      return text.replace(pattern, function(matched) {
+        var tpl = angular.element(template);
+        tpl.append(matched);
+        tpl.attr('title', annotation.tooltip_content);
+        tpl.attr('uuid', annotation.uuid);
+
+        if (annotation.category == 'miamlist') tpl.addClass("miamword");
+        if (annotation.category == 'stoplist' && annotation.level == 'local') tpl.addClass("stopword");
+        //if (annotation.category == 'stoplist' && annotation.level == 'global') tpl.addClass("global-stopword");
+
+        return tpl.get(0).outerHTML;
+      });
+    }
+
+    function compileText(annotations, fullText, abstractText, $rootScope) {
+      counter = 0;
+      var templateBegin = "<span ng-controller='AnnotationController' ng-click='onClick($event)' class='keyword-inline'>";
+      var templateBeginRegexp = "<span ng-controller='AnnotationController' ng-click='onClick\(\$event\)' class='keyword-inline'>";
+
+      var templateEnd = "</span>";
+      var template = templateBegin + templateEnd;
+
+      var startPattern = "\\b((?:"+templateBeginRegexp+")*";
+      var middlePattern = "(?:<\/span>)*\\s(?:"+templateBeginRegexp+")*";
+      var endPattern = "(?:<\/span>)*)\\b";
+      /*
+       * Sorts annotations on the number of words
+       */
+      function lengthSort(listitems, valuekey) {
+          listitems.sort(function(a, b) {
+              var compA = a[valuekey].split(" ").length;
+              var compB = b[valuekey].split(" ").length;
+              return (compA > compB) ? -1 : (compA <= compB) ? 1 : 0;
+          });
+          return listitems;
+      }
+
+      var sortedSizeAnnotations = lengthSort(annotations, "text");
+      var extra_stoplist = [],
+          extra_miamlist = [];
+
+      _.each(sortedSizeAnnotations, function (annotation) {
+        // TODO better split to manage two-words with minus sign
+        var words = annotation.text.split(" ");
+        var pattern = new RegExp(startPattern + words.join(middlePattern) + endPattern, 'gmi');
+        var textRegexp = new RegExp("\\b"+annotation.text+"\\b", 'igm');
+
+        if (pattern.test(fullText) === true) {
+          fullText = replaceTextByTemplate(fullText, annotation, template, pattern);
+          // TODO remove debug
+          counter++;
+        } else if (pattern.test(abstractText) === true) {
+          abstractText = replaceTextByTemplate(abstractText, annotation, template, pattern);
+          counter++;
+        } else if (!textRegexp.test($rootScope.full_text) && !textRegexp.test($rootScope.abstract_text)) {
+          if (annotation.category == "stoplist" && annotation.level == 'local') {
+            // if ($.inArray(annotation.uuid, $scope.extra_stoplist.map(function (item) {
+            //     return item.uuid;
+            //   })) == -1) {
+              extra_stoplist = lengthSort(extra_stoplist.concat(annotation), "text");
+            // }
+          } else if (annotation.category == "miamlist") {
+            // if ($.inArray(annotation.uuid, $scope.extra_miamlist.map(function (item) {
+            //     return item.uuid;
+            //   })) == -1) {
+              extra_miamlist = lengthSort(extra_miamlist.concat(annotation), "text");
+            // }
+          }
+        }
+      });
+      $scope.extra_stoplist = extra_stoplist;
+      $scope.extra_miamlist = extra_miamlist;
+
+      return {
+        'fullTextHtml': fullText,
+        'abstractTextHtml': abstractText
+      };
+    }
+
+    $rootScope.$watchCollection('annotations', function (newValue, oldValue) {
+      if ($rootScope.annotations === undefined) return;
+      if (angular.equals(newValue, oldValue)) return;
+
+      $scope.extra_stoplist = [];
+      $scope.extra_miamlist = [];
+
+      var result = compileText(
+        $rootScope.annotations,
+        angular.copy($rootScope.full_text),
+        angular.copy($rootScope.abstract_text),
+        $rootScope);
+
+      console.log($rootScope.annotations.length);
+      console.log(counter);
+
+      angular.element('#full-text').html(result.fullTextHtml);
+      angular.element('#abstract-text').html(result.abstractTextHtml);
+
+      angular.element('.text-container').find('[ng-controller=AnnotationController]').each(function(idx, elt) {
+        angular.element(elt).replaceWith($compile(elt)($rootScope.$new(true)));
+      });
+    });
+
+    function submitNewAnnotation($event, inputEltId, category) {
+      if ($event.keyCode !== undefined && $event.keyCode != 13) return;
+      var value = $(inputEltId).val().trim();
+      if (value === "") return;
+
+      NgramHttpService.post(
+        {
+          'listId': $rootScope.listId
+        },
+        {'annotation' : {'text': value, 'category': category, 'level': 'local'}},
+        function(data) {
+          // on success
+          if (data) {
+            $rootScope.annotations.push(data);
+          }
+      });
+
+      $(inputEltId).val("");
+    }
+
+    $scope.onMiamlistSubmit = function ($event) {
+      submitNewAnnotation($event, "#miamlist-input", "miamlist");
+    };
+    // TODO refactor
+    $scope.onStoplistSubmit = function ($event) {
+      submitNewAnnotation($event, "#stoplist-input", "stoplist");
+    };
+    $scope.numStopPages = function () {
+      if ($scope.extra_stoplist === undefined) return 0;
+      return Math.ceil($scope.extra_stoplist.length / $scope.pageSize);
+    };
+    $scope.numMiamPages = function () {
+      if ($scope.extra_miamlist === undefined) return 0;
+      return Math.ceil($scope.extra_miamlist.length / $scope.pageSize);
+    };
+    $scope.nextMiamPage = function() {
+      $scope.currentMiamPage = $scope.currentMiamPage + 1;
+    };
+    $scope.previousMiamPage = function() {
+      $scope.currentMiamPage = $scope.currentMiamPage - 1;
+    };
+    $scope.nextStopPage = function() {
+      $scope.currentStopPage = $scope.currentStopPage + 1;
+    };
+    $scope.previousStopPage = function() {
+      $scope.currentStopPage = $scope.currentStopPage - 1;
+    };
+  }]);
+
+  window.annotationsApp.filter('startFrom', function () {
+    return function (input, start) {
+      if (input === undefined) return;
+      start = +start; //parse to int
+      return input.slice(start);
+    };
+  });
+
+  window.annotationsApp.controller('DocController', ['$scope', '$rootScope', 'NgramListHttpService', 'DocumentHttpService',
+  function ($scope, $rootScope, NgramListHttpService, DocumentHttpService) {
+    //$rootScope.$on('loadNewDoc', function (event, listId, docId) {
+      $rootScope.documentResource = DocumentHttpService.get({docId: $rootScope.docId}, function(data, responseHeaders) {
+        $scope.title = data.title;
+        $scope.authors = data.authors;
+        $scope.journal = data.journal;
+        $scope.publication_date = data.publication_date;
+        // TODO this data have to be deleted
+        $scope.current_page_number = data.current_page_number;
+        $scope.last_page_number = data.last_page_number;
+        // put in rootScope because used by many components
+        $rootScope.docId = data.id;
+        $rootScope.full_text = data.full_text;
+        $rootScope.abstract_text = data.abstract_text;
+        // GET the annotations
+        $rootScope.annotationsResource = NgramListHttpService.get(
+          {'listId': $rootScope.listId, 'docId': $rootScope.docId}
+        ).$promise.then(function(data) {
+          $rootScope.annotations = data[$rootScope.listId.toString()][$rootScope.docId.toString()];
+        });
+      });
+    //});
+    // TODO setup pagination client-side
+    $scope.onPreviousClick = function () {
+      DocumentHttpService.get($scope.docId - 1);
+    };
+    $scope.onNextClick = function () {
+      DocumentHttpService.get($scope.docId + 1);
+    };
+  }]);
+
+  window.annotationsApp.run(function ($rootScope) {
+    /* GET the document node and all the annotations in the list associated */
+    // TODO debug
+    $rootScope.docId = 4;
+    $rootScope.listId = 1;
+  });
+
+})(window);

annotations/static/annotations/http.js

+(function () {
+  'use strict';
+
+    var http = angular.module('annotationsAppHttp', ['ngResource']);
+
+    /*
+    * Read Document
+    */
+    http.factory('DocumentHttpService', function($resource) {
+      return $resource(
+        window.ANNOTATION_API_URL  + "document" + '/:docId/',
+        {
+          docId: '@docId'
+        },
+        {
+          get: {
+            method: 'GET',
+            params: {docId: '@docId'}
+          }
+        }
+      );
+    });
+
+    /*
+    * Read Ngram Lists
+    */
+    http.factory('NgramListHttpService', function ($resource) {
+      return $resource(
+        window.ANNOTATION_API_URL  + 'lists' + '/:listId/',
+      	{
+          listId: '@listId'
+        },
+  			{
+          get: {
+      			method: 'GET',
+      			params: {listId: '@listId'}
+      		}
+        }
+      );
+    });
+
+    /*
+    * Create, modify or delete on Ngram of a list
+    */
+    http.factory('NgramHttpService', function ($resource) {
+      return $resource(
+        window.ANNOTATION_API_URL  + 'lists' + '/:listId/ngrams/' + ':ngramId/',
+      	{
+          listId: '@listId'
+        },
+  			{
+          post: {
+            method: 'POST',
+            params: {'listId': '@listId', 'ngramId': '@ngramId'}
+          },
+          delete: {
+            method: 'DELETE',
+            params: {'listId': '@listId', 'ngramId': '@ngramId'}
+          }
+        }
+      );
+    });
+      // return {
+        // newAnnotationObject: function(text, category, level) {
+        //   return {
+        //     'text': text.trim(),
+        //     'category': category,
+        //     'level': level
+        //   };
+        // },
+        // create: function(keyword, $rootScope) {
+        //   if ($rootScope.annotations === undefined) $rootScope.annotations = [];
+        //   // find duplicate by text
+        //   var existing = _.find(
+        //     $rootScope.annotations,
+        //     function(annotation) { return annotation.text.trim().toLowerCase() === keyword.text.trim().toLowerCase(); }
+        //   );
+        //   // delete existing conflicting data before adding new
+        //   if (existing) {
+        //     if (existing.category == keyword.category && existing.level == keyword.level) return;
+        //     this.delete(existing, $rootScope);
+        //   }
+        //   // TODO remove server mocking
+        //   var mock = _.extend(keyword, {
+        //     'uuid': jQuery.now().toString(),
+        //     'occurrences': 322
+        //   });
+        //
+        //   $timeout(function() {
+        //     $rootScope.$apply(function() {
+        //       $rootScope.annotations.push(mock);
+        //     });
+        //   });
+        //
+        //   return mock;
+        // },
+        // delete: function(keyword, $rootScope) {
+        //   var filtered = _.filter($rootScope.annotations, function(item) {
+        //     if (item.uuid == keyword.uuid) {
+        //       return false;
+        //     } else {
+        //       return true;
+        //     }
+        //   });
+        //   $timeout(function() {
+        //     $rootScope.$apply(function() {
+        //       $rootScope.annotations = filtered;
+        //     });
+        //   });
+        // }
+      // };
+
+})(window);

annotations/static/annotations/keyword_tpl.html

+<span ng-if="keyword.category == 'miamlist'" ng-click='onDeleteClick()' class="delete-keyword" data-keyword-id="{{keyword.uuid}}" data-keyword-text="{{keyword.text}}" data-keyword-category="miamlist">×</span>
+<a ng-if="keyword.category == 'miamlist'" href="#" data-toggle="tooltip" class="keyword miamword">{{keyword.text}}</a>
+<span ng-if="keyword.category == 'stoplist'" ng-click='onDeleteClick()' class="delete-keyword" data-keyword-id="{{keyword.uuid}}" data-keyword-text="{{keyword.text}}" data-keyword-category="stoplist">×</span>
+<a ng-if="keyword.category == 'stoplist'" href="#" data-toggle="tooltip" class="keyword stopword">{{keyword.text}}</a>
+<span class="occurrences" data-keyword-id="{{keyword.uuid}}">{{keyword.occurrences}}</span>

annotations/static/annotations/main.js

+
+// include angular loader, which allows the files to load in any order
+//@@NG_LOADER_START@@
+// You need to run `npm run update-index-async` to inject the angular async code here
+//@@NG_LOADER_END@@
+// include a third-party async loader library
+/*!
+ * $script.js v1.3
+ * https://github.com/ded/script.js
+ * Copyright: @ded & @fat - Dustin Diaz, Jacob Thornton 2011
+ * Follow our software http://twitter.com/dedfat
+ * License: MIT
+ */
+!function(a,b,c){function t(a,c){var e=b.createElement("script"),f=j;e.onload=e.onerror=e[o]=function(){e[m]&&!/^c|loade/.test(e[m])||f||(e.onload=e[o]=null,f=1,c())},e.async=1,e.src=a,d.insertBefore(e,d.firstChild)}function q(a,b){p(a,function(a){return!b(a)})}var d=b.getElementsByTagName("head")[0],e={},f={},g={},h={},i="string",j=!1,k="push",l="DOMContentLoaded",m="readyState",n="addEventListener",o="onreadystatechange",p=function(a,b){for(var c=0,d=a.length;c<d;++c)if(!b(a[c]))return j;return 1};!b[m]&&b[n]&&(b[n](l,function r(){b.removeEventListener(l,r,j),b[m]="complete"},j),b[m]="loading");var s=function(a,b,d){function o(){if(!--m){e[l]=1,j&&j();for(var a in g)p(a.split("|"),n)&&!q(g[a],n)&&(g[a]=[])}}function n(a){return a.call?a():e[a]}a=a[k]?a:[a];var i=b&&b.call,j=i?b:d,l=i?a.join(""):b,m=a.length;c(function(){q(a,function(a){h[a]?(l&&(f[l]=1),o()):(h[a]=1,l&&(f[l]=1),t(s.path?s.path+a+".js":a,o))})},0);return s};s.get=t,s.ready=function(a,b,c){a=a[k]?a:[a];var d=[];!q(a,function(a){e[a]||d[k](a)})&&p(a,function(a){return e[a]})?b():!function(a){g[a]=g[a]||[],g[a][k](b),c&&c(d)}(a.join("|"));return s};var u=a.$script;s.noConflict=function(){a.$script=u;return this},typeof module!="undefined"&&module.exports?module.exports=s:a.$script=s}(this,document,setTimeout)
+// load all of the dependencies asynchronously.
+
+var S = window.STATIC_URL;
+
+$script([
+  S + 'bower_components/angular/angular.min.js',
+  S + 'bower_components/bootstrap/dist/js/bootstrap.min.js',
+  S + 'bower_components/angular-loader/angular-loader.min.js',
+  S + 'bower_components/underscore/underscore-1.5.2.js',
+  //'bower_components/angular-route/angular-route.js',
+], function() {
+  $script([
+    S + 'bower_components/angular-resource/angular-resource.min.js'], function() {
+    $script([S + 'annotations/http.js', S + 'annotations/app.js'], function() {
+      // when all is done, execute bootstrap angular application (replace ng-app directive)
+      angular.bootstrap(document.getElementById("annotationsApp"), ['annotationsApp']);
+    });
+  });
+
+});

annotations/static/annotations/selection_tpl.html

+<ul class="noselection">
+  <li>{{level}}<span ng-if="category !== null"> {{category}}</span></li>
+  <li class="miamword" ng-if="local_miamlist === true" ng-click="onClick($event, 'post', 'miamlist', 'local')">add to miam-list</li>
+  <li class="miamword"  ng-if="local_miamlist === false" ng-click="onClick($event, 'delete', 'miamlist', 'local')">remove from miam-list</li>
+
+  <li class="stopword" ng-if="local_stoplist === true" ng-click="onClick($event, 'post', 'stoplist', 'local')">add to local stop-list</li>
+  <li class="stopword" ng-if="local_stoplist === false" ng-click="onClick($event, 'delete', 'stoplist', 'local')">remove from local stop-list</li>
+
+  <li class="stopword" ng-if="global_stoplist === true" ng-click="onClick($event, 'post', 'stoplist', 'global')">add to global stop-list</li>
+  <li class="stopword" ng-if="global_stoplist === false" ng-click="onClick($event, 'delete', 'stoplist', 'global')">remove from global stop-list</li>
+</ul>

annotations/static/bower_components/angular-loader/angular-loader.min.js

+/*
+ AngularJS v1.2.28
+ (c) 2010-2014 Google, Inc. http://angularjs.org
+ License: MIT
+*/
+(function(){'use strict';function d(a){return function(){var c=arguments[0],b,c="["+(a?a+":":"")+c+"] http://errors.angularjs.org/1.2.28/"+(a?a+"/":"")+c;for(b=1;b<arguments.length;b++)c=c+(1==b?"?":"&")+"p"+(b-1)+"="+encodeURIComponent("function"==typeof arguments[b]?arguments[b].toString().replace(/ \{[\s\S]*$/,""):"undefined"==typeof arguments[b]?"undefined":"string"!=typeof arguments[b]?JSON.stringify(arguments[b]):arguments[b]);return Error(c)}}(function(a){var c=d("$injector"),b=d("ng");a=a.angular||
+(a.angular={});a.$$minErr=a.$$minErr||d;return a.module||(a.module=function(){var a={};return function(e,d,f){if("hasOwnProperty"===e)throw b("badname","module");d&&a.hasOwnProperty(e)&&(a[e]=null);return a[e]||(a[e]=function(){function a(c,d,e){return function(){b[e||"push"]([c,d,arguments]);return g}}if(!d)throw c("nomod",e);var b=[],h=[],k=a("$injector","invoke"),g={_invokeQueue:b,_runBlocks:h,requires:d,name:e,provider:a("$provide","provider"),factory:a("$provide","factory"),service:a("$provide",
+"service"),value:a("$provide","value"),constant:a("$provide","constant","unshift"),animation:a("$animateProvider","register"),filter:a("$filterProvider","register"),controller:a("$controllerProvider","register"),directive:a("$compileProvider","directive"),config:k,run:function(a){h.push(a);return this}};f&&k(f);return g}())}}())})(window)})(window);
+//# sourceMappingURL=angular-loader.min.js.map

annotations/static/bower_components/angular-resource/angular-resource.min.js

+/*
+ AngularJS v1.2.28
+ (c) 2010-2014 Google, Inc. http://angularjs.org
+ License: MIT
+*/
+(function(H,a,A){'use strict';function D(p,g){g=g||{};a.forEach(g,function(a,c){delete g[c]});for(var c in p)!p.hasOwnProperty(c)||"$"===c.charAt(0)&&"$"===c.charAt(1)||(g[c]=p[c]);return g}var v=a.$$minErr("$resource"),C=/^(\.[a-zA-Z_$][0-9a-zA-Z_$]*)+$/;a.module("ngResource",["ng"]).factory("$resource",["$http","$q",function(p,g){function c(a,c){this.template=a;this.defaults=c||{};this.urlParams={}}function t(n,w,l){function r(h,d){var e={};d=x({},w,d);s(d,function(b,d){u(b)&&(b=b());var k;if(b&&
+b.charAt&&"@"==b.charAt(0)){k=h;var a=b.substr(1);if(null==a||""===a||"hasOwnProperty"===a||!C.test("."+a))throw v("badmember",a);for(var a=a.split("."),f=0,c=a.length;f<c&&k!==A;f++){var g=a[f];k=null!==k?k[g]:A}}else k=b;e[d]=k});return e}function e(a){return a.resource}function f(a){D(a||{},this)}var F=new c(n);l=x({},B,l);s(l,function(h,d){var c=/^(POST|PUT|PATCH)$/i.test(h.method);f[d]=function(b,d,k,w){var q={},n,l,y;switch(arguments.length){case 4:y=w,l=k;case 3:case 2:if(u(d)){if(u(b)){l=
+b;y=d;break}l=d;y=k}else{q=b;n=d;l=k;break}case 1:u(b)?l=b:c?n=b:q=b;break;case 0:break;default:throw v("badargs",arguments.length);}var t=this instanceof f,m=t?n:h.isArray?[]:new f(n),z={},B=h.interceptor&&h.interceptor.response||e,C=h.interceptor&&h.interceptor.responseError||A;s(h,function(a,b){"params"!=b&&("isArray"!=b&&"interceptor"!=b)&&(z[b]=G(a))});c&&(z.data=n);F.setUrlParams(z,x({},r(n,h.params||{}),q),h.url);q=p(z).then(function(b){var d=b.data,k=m.$promise;if(d){if(a.isArray(d)!==!!h.isArray)throw v("badcfg",
+h.isArray?"array":"object",a.isArray(d)?"array":"object");h.isArray?(m.length=0,s(d,function(b){"object"===typeof b?m.push(new f(b)):m.push(b)})):(D(d,m),m.$promise=k)}m.$resolved=!0;b.resource=m;return b},function(b){m.$resolved=!0;(y||E)(b);return g.reject(b)});q=q.then(function(b){var a=B(b);(l||E)(a,b.headers);return a},C);return t?q:(m.$promise=q,m.$resolved=!1,m)};f.prototype["$"+d]=function(b,a,k){u(b)&&(k=a,a=b,b={});b=f[d].call(this,b,this,a,k);return b.$promise||b}});f.bind=function(a){return t(n,
+x({},w,a),l)};return f}var B={get:{method:"GET"},save:{method:"POST"},query:{method:"GET",isArray:!0},remove:{method:"DELETE"},"delete":{method:"DELETE"}},E=a.noop,s=a.forEach,x=a.extend,G=a.copy,u=a.isFunction;c.prototype={setUrlParams:function(c,g,l){var r=this,e=l||r.template,f,p,h=r.urlParams={};s(e.split(/\W/),function(a){if("hasOwnProperty"===a)throw v("badname");!/^\d+$/.test(a)&&(a&&RegExp("(^|[^\\\\]):"+a+"(\\W|$)").test(e))&&(h[a]=!0)});e=e.replace(/\\:/g,":");g=g||{};s(r.urlParams,function(d,
+c){f=g.hasOwnProperty(c)?g[c]:r.defaults[c];a.isDefined(f)&&null!==f?(p=encodeURIComponent(f).replace(/%40/gi,"@").replace(/%3A/gi,":").replace(/%24/g,"$").replace(/%2C/gi,",").replace(/%20/g,"%20").replace(/%26/gi,"&").replace(/%3D/gi,"=").replace(/%2B/gi,"+"),e=e.replace(RegExp(":"+c+"(\\W|$)","g"),function(a,c){return p+c})):e=e.replace(RegExp("(/?):"+c+"(\\W|$)","g"),function(a,c,d){return"/"==d.charAt(0)?d:c+d})});e=e.replace(/\/+$/,"")||"/";e=e.replace(/\/\.(?=\w+($|\?))/,".");c.url=e.replace(/\/\\\./,
+"/.");s(g,function(a,e){r.urlParams[e]||(c.params=c.params||{},c.params[e]=a)})}};return t}])})(window,window.angular);
+//# sourceMappingURL=angular-resource.min.js.map

annotations/static/bower_components/angular/angular-csp.css

+/* Include this file in your html if you are using the CSP mode. */
+
+@charset "UTF-8";
+
+[ng\:cloak], [ng-cloak], [data-ng-cloak], [x-ng-cloak],
+.ng-cloak, .x-ng-cloak,
+.ng-hide {
+  display: none !important;
+}
+
+ng\:form {
+  display: block;
+}
+
+.ng-animate-block-transitions {
+  transition:0s all!important;
+  -webkit-transition:0s all!important;
+}
+
+/* show the element during a show/hide animation when the
+ * animation is ongoing, but the .ng-hide class is active */
+.ng-hide-add-active, .ng-hide-remove {
+  display: block!important;
+}

annotations/static/bower_components/bootstrap/dist/js/bootstrap.min.js

+/*!
+ * Bootstrap v3.3.1 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+if("undefined"==typeof jQuery)throw new Error("Bootstrap's JavaScript requires jQuery");+function(a){var b=a.fn.jquery.split(" ")[0].split(".");if(b[0]<2&&b[1]<9||1==b[0]&&9==b[1]&&b[2]<1)throw new Error("Bootstrap's JavaScript requires jQuery version 1.9.1 or higher")}(jQuery),+function(a){"use strict";function b(){var a=document.createElement("bootstrap"),b={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd otransitionend",transition:"transitionend"};for(var c in b)if(void 0!==a.style[c])return{end:b[c]};return!1}a.fn.emulateTransitionEnd=function(b){var c=!1,d=this;a(this).one("bsTransitionEnd",function(){c=!0});var e=function(){c||a(d).trigger(a.support.transition.end)};return setTimeout(e,b),this},a(function(){a.support.transition=b(),a.support.transition&&(a.event.special.bsTransitionEnd={bindType:a.support.transition.end,delegateType:a.support.transition.end,handle:function(b){return 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+//# sourceMappingURL=jquery.min.map
\ No newline at end of file

annotations/static/bower_components/underscore/underscore-1.5.2.js

+//     Underscore.js 1.5.2
+//     http://underscorejs.org
+//     (c) 2009-2013 Jeremy Ashkenas, DocumentCloud and Investigative Reporters & Editors
+//     Underscore may be freely distributed under the MIT license.
+
+(function() {
+
+  // Baseline setup
+  // --------------
+
+  // Establish the root object, `window` in the browser, or `exports` on the server.
+  var root = this;
+
+  // Save the previous value of the `_` variable.
+  var previousUnderscore = root._;
+
+  // Establish the object that gets returned to break out of a loop iteration.
+  var breaker = {};
+
+  // Save bytes in the minified (but not gzipped) version:
+  var ArrayProto = Array.prototype, ObjProto = Object.prototype, FuncProto = Function.prototype;
+
+  // Create quick reference variables for speed access to core prototypes.
+  var
+    push             = ArrayProto.push,
+    slice            = ArrayProto.slice,
+    concat           = ArrayProto.concat,
+    toString         = ObjProto.toString,
+    hasOwnProperty   = ObjProto.hasOwnProperty;
+
+  // All **ECMAScript 5** native function implementations that we hope to use
+  // are declared here.
+  var
+    nativeForEach      = ArrayProto.forEach,
+    nativeMap          = ArrayProto.map,
+    nativeReduce       = ArrayProto.reduce,
+    nativeReduceRight  = ArrayProto.reduceRight,
+    nativeFilter       = ArrayProto.filter,
+    nativeEvery        = ArrayProto.every,
+    nativeSome         = ArrayProto.some,
+    nativeIndexOf      = ArrayProto.indexOf,
+    nativeLastIndexOf  = ArrayProto.lastIndexOf,
+    nativeIsArray      = Array.isArray,
+    nativeKeys         = Object.keys,
+    nativeBind         = FuncProto.bind;
+
+  // Create a safe reference to the Underscore object for use below.
+  var _ = function(obj) {
+    if (obj instanceof _) return obj;
+    if (!(this instanceof _)) return new _(obj);
+    this._wrapped = obj;
+  };
+
+  // Export the Underscore object for **Node.js**, with
+  // backwards-compatibility for the old `require()` API. If we're in
+  // the browser, add `_` as a global object via a string identifier,
+  // for Closure Compiler "advanced" mode.
+  if (typeof exports !== 'undefined') {
+    if (typeof module !== 'undefined' && module.exports) {
+      exports = module.exports = _;
+    }
+    exports._ = _;
+  } else {
+    root._ = _;
+  }
+
+  // Current version.
+  _.VERSION = '1.5.2';
+
+  // Collection Functions
+  // --------------------
+
+  // The cornerstone, an `each` implementation, aka `forEach`.
+  // Handles objects with the built-in `forEach`, arrays, and raw objects.
+  // Delegates to **ECMAScript 5**'s native `forEach` if available.
+  var each = _.each = _.forEach = function(obj, iterator, context) {
+    if (obj == null) return;
+    if (nativeForEach && obj.forEach === nativeForEach) {
+      obj.forEach(iterator, context);
+    } else if (obj.length === +obj.length) {
+      for (var i = 0, length = obj.length; i < length; i++) {
+        if (iterator.call(context, obj[i], i, obj) === breaker) return;
+      }
+    } else {
+      var keys = _.keys(obj);
+      for (var i = 0, length = keys.length; i < length; i++) {
+        if (iterator.call(context, obj[keys[i]], keys[i], obj) === breaker) return;
+      }
+    }
+  };
+
+  // Return the results of applying the iterator to each element.
+  // Delegates to **ECMAScript 5**'s native `map` if available.
+  _.map = _.collect = function(obj, iterator, context) {
+    var results = [];
+    if (obj == null) return results;
+    if (nativeMap && obj.map === nativeMap) return obj.map(iterator, context);
+    each(obj, function(value, index, list) {
+      results.push(iterator.call(context, value, index, list));
+    });
+    return results;
+  };
+
+  var reduceError = 'Reduce of empty array with no initial value';
+
+  // **Reduce** builds up a single result from a list of values, aka `inject`,
+  // or `foldl`. Delegates to **ECMAScript 5**'s native `reduce` if available.
+  _.reduce = _.foldl = _.inject = function(obj, iterator, memo, context) {
+    var initial = arguments.length > 2;
+    if (obj == null) obj = [];
+    if (nativeReduce && obj.reduce === nativeReduce) {
+      if (context) iterator = _.bind(iterator, context);
+      return initial ? obj.reduce(iterator, memo) : obj.reduce(iterator);
+    }
+    each(obj, function(value, index, list) {
+      if (!initial) {
+        memo = value;
+        initial = true;
+      } else {
+        memo = iterator.call(context, memo, value, index, list);
+      }
+    });
+    if (!initial) throw new TypeError(reduceError);
+    return memo;
+  };
+
+  // The right-associative version of reduce, also known as `foldr`.
+  // Delegates to **ECMAScript 5**'s native `reduceRight` if available.
+  _.reduceRight = _.foldr = function(obj, iterator, memo, context) {
+    var initial = arguments.length > 2;
+    if (obj == null) obj = [];
+    if (nativeReduceRight && obj.reduceRight === nativeReduceRight) {
+      if (context) iterator = _.bind(iterator, context);
+      return initial ? obj.reduceRight(iterator, memo) : obj.reduceRight(iterator);
+    }
+    var length = obj.length;
+    if (length !== +length) {
+      var keys = _.keys(obj);
+      length = keys.length;
+    }
+    each(obj, function(value, index, list) {
+      index = keys ? keys[--length] : --length;
+      if (!initial) {
+        memo = obj[index];
+        initial = true;
+      } else {
+        memo = iterator.call(context, memo, obj[index], index, list);
+      }
+    });
+    if (!initial) throw new TypeError(reduceError);
+    return memo;
+  };
+
+  // Return the first value which passes a truth test. Aliased as `detect`.
+  _.find = _.detect = function(obj, iterator, context) {
+    var result;
+    any(obj, function(value, index, list) {
+      if (iterator.call(context, value, index, list)) {
+        result = value;
+        return true;
+      }
+    });
+    return result;
+  };
+
+  // Return all the elements that pass a truth test.
+  // Delegates to **ECMAScript 5**'s native `filter` if available.
+  // Aliased as `select`.
+  _.filter = _.select = function(obj, iterator, context) {
+    var results = [];
+    if (obj == null) return results;
+    if (nativeFilter && obj.filter === nativeFilter) return obj.filter(iterator, context);
+    each(obj, function(value, index, list) {
+      if (iterator.call(context, value, index, list)) results.push(value);
+    });
+    return results;
+  };
+
+  // Return all the elements for which a truth test fails.
+  _.reject = function(obj, iterator, context) {
+    return _.filter(obj, function(value, index, list) {
+      return !iterator.call(context, value, index, list);
+    }, context);
+  };
+
+  // Determine whether all of the elements match a truth test.
+  // Delegates to **ECMAScript 5**'s native `every` if available.
+  // Aliased as `all`.
+  _.every = _.all = function(obj, iterator, context) {
+    iterator || (iterator = _.identity);
+    var result = true;
+    if (obj == null) return result;
+    if (nativeEvery && obj.every === nativeEvery) return obj.every(iterator, context);
+    each(obj, function(value, index, list) {
+      if (!(result = result && iterator.call(context, value, index, list))) return breaker;
+    });
+    return !!result;
+  };
+
+  // Determine if at least one element in the object matches a truth test.
+  // Delegates to **ECMAScript 5**'s native `some` if available.
+  // Aliased as `any`.
+  var any = _.some = _.any = function(obj, iterator, context) {
+    iterator || (iterator = _.identity);
+    var result = false;
+    if (obj == null) return result;
+    if (nativeSome && obj.some === nativeSome) return obj.some(iterator, context);
+    each(obj, function(value, index, list) {
+      if (result || (result = iterator.call(context, value, index, list))) return breaker;
+    });
+    return !!result;
+  };
+
+  // Determine if the array or object contains a given value (using `===`).
+  // Aliased as `include`.
+  _.contains = _.include = function(obj, target) {
+    if (obj == null) return false;
+    if (nativeIndexOf && obj.indexOf === nativeIndexOf) return obj.indexOf(target) != -1;
+    return any(obj, function(value) {
+      return value === target;
+    });
+  };
+
+  // Invoke a method (with arguments) on every item in a collection.
+  _.invoke = function(obj, method) {
+    var args = slice.call(arguments, 2);
+    var isFunc = _.isFunction(method);
+    return _.map(obj, function(value) {
+      return (isFunc ? method : value[method]).apply(value, args);
+    });
+  };
+
+  // Convenience version of a common use case of `map`: fetching a property.
+  _.pluck = function(obj, key) {
+    return _.map(obj, function(value){ return value[key]; });
+  };
+
+  // Convenience version of a common use case of `filter`: selecting only objects
+  // containing specific `key:value` pairs.
+  _.where = function(obj, attrs, first) {
+    if (_.isEmpty(attrs)) return first ? void 0 : [];
+    return _[first ? 'find' : 'filter'](obj, function(value) {
+      for (var key in attrs) {
+        if (attrs[key] !== value[key]) return false;
+      }
+      return true;
+    });
+  };
+
+  // Convenience version of a common use case of `find`: getting the first object
+  // containing specific `key:value` pairs.
+  _.findWhere = function(obj, attrs) {
+    return _.where(obj, attrs, true);
+  };
+
+  // Return the maximum element or (element-based computation).
+  // Can't optimize arrays of integers longer than 65,535 elements.
+  // See [WebKit Bug 80797](https://bugs.webkit.org/show_bug.cgi?id=80797)
+  _.max = function(obj, iterator, context) {
+    if (!iterator && _.isArray(obj) && obj[0] === +obj[0] && obj.length < 65535) {
+      return Math.max.apply(Math, obj);
+    }
+    if (!iterator && _.isEmpty(obj)) return -Infinity;
+    var result = {computed : -Infinity, value: -Infinity};
+    each(obj, function(value, index, list) {
+      var computed = iterator ? iterator.call(context, value, index, list) : value;
+      computed > result.computed && (result = {value : value, computed : computed});
+    });
+    return result.value;
+  };
+
+  // Return the minimum element (or element-based computation).
+  _.min = function(obj, iterator, context) {
+    if (!iterator && _.isArray(obj) && obj[0] === +obj[0] && obj.length < 65535) {
+      return Math.min.apply(Math, obj);
+    }
+    if (!iterator && _.isEmpty(obj)) return Infinity;
+    var result = {computed : Infinity, value: Infinity};
+    each(obj, function(value, index, list) {
+      var computed = iterator ? iterator.call(context, value, index, list) : value;
+      computed < result.computed && (result = {value : value, computed : computed});
+    });
+    return result.value;
+  };
+
+  // Shuffle an array, using the modern version of the 
+  // [Fisher-Yates shuffle](http://en.wikipedia.org/wiki/Fisher–Yates_shuffle).
+  _.shuffle = function(obj) {
+    var rand;
+    var index = 0;
+    var shuffled = [];
+    each(obj, function(value) {
+      rand = _.random(index++);
+      shuffled[index - 1] = shuffled[rand];
+      shuffled[rand] = value;
+    });
+    return shuffled;
+  };
+
+  // Sample **n** random values from an array.
+  // If **n** is not specified, returns a single random element from the array.
+  // The internal `guard` argument allows it to work with `map`.
+  _.sample = function(obj, n, guard) {
+    if (arguments.length < 2 || guard) {
+      return obj[_.random(obj.length - 1)];
+    }
+    return _.shuffle(obj).slice(0, Math.max(0, n));
+  };
+
+  // An internal function to generate lookup iterators.
+  var lookupIterator = function(value) {
+    return _.isFunction(value) ? value : function(obj){ return obj[value]; };
+  };
+
+  // Sort the object's values by a criterion produced by an iterator.
+  _.sortBy = function(obj, value, context) {
+    var iterator = lookupIterator(value);
+    return _.pluck(_.map(obj, function(value, index, list) {
+      return {
+        value: value,
+        index: index,
+        criteria: iterator.call(context, value, index, list)
+      };
+    }).sort(function(left, right) {
+      var a = left.criteria;
+      var b = right.criteria;
+      if (a !== b) {
+        if (a > b || a === void 0) return 1;
+        if (a < b || b === void 0) return -1;
+      }
+      return left.index - right.index;
+    }), 'value');
+  };
+
+  // An internal function used for aggregate "group by" operations.
+  var group = function(behavior) {
+    return function(obj, value, context) {
+      var result = {};
+      var iterator = value == null ? _.identity : lookupIterator(value);
+      each(obj, function(value, index) {
+        var key = iterator.call(context, value, index, obj);
+        behavior(result, key, value);
+      });
+      return result;
+    };
+  };
+
+  // Groups the object's values by a criterion. Pass either a string attribute
+  // to group by, or a function that returns the criterion.
+  _.groupBy = group(function(result, key, value) {
+    (_.has(result, key) ? result[key] : (result[key] = [])).push(value);
+  });
+
+  // Indexes the object's values by a criterion, similar to `groupBy`, but for
+  // when you know that your index values will be unique.
+  _.indexBy = group(function(result, key, value) {
+    result[key] = value;
+  });
+
+  // Counts instances of an object that group by a certain criterion. Pass
+  // either a string attribute to count by, or a function that returns the
+  // criterion.
+  _.countBy = group(function(result, key) {
+    _.has(result, key) ? result[key]++ : result[key] = 1;
+  });
+
+  // Use a comparator function to figure out the smallest index at which
+  // an object should be inserted so as to maintain order. Uses binary search.
+  _.sortedIndex = function(array, obj, iterator, context) {
+    iterator = iterator == null ? _.identity : lookupIterator(iterator);
+    var value = iterator.call(context, obj);
+    var low = 0, high = array.length;
+    while (low < high) {
+      var mid = (low + high) >>> 1;
+      iterator.call(context, array[mid]) < value ? low = mid + 1 : high = mid;
+    }
+    return low;
+  };
+
+  // Safely create a real, live array from anything iterable.
+  _.toArray = function(obj) {
+    if (!obj) return [];
+    if (_.isArray(obj)) return slice.call(obj);
+    if (obj.length === +obj.length) return _.map(obj, _.identity);
+    return _.values(obj);
+  };
+
+  // Return the number of elements in an object.
+  _.size = function(obj) {
+    if (obj == null) return 0;
+    return (obj.length === +obj.length) ? obj.length : _.keys(obj).length;
+  };
+
+  // Array Functions
+  // ---------------
+
+  // Get the first element of an array. Passing **n** will return the first N
+  // values in the array. Aliased as `head` and `take`. The **guard** check
+  // allows it to work with `_.map`.
+  _.first = _.head = _.take = function(array, n, guard) {
+    if (array == null) return void 0;
+    return (n == null) || guard ? array[0] : slice.call(array, 0, n);
+  };
+
+  // Returns everything but the last entry of the array. Especially useful on
+  // the arguments object. Passing **n** will return all the values in
+  // the array, excluding the last N. The **guard** check allows it to work with
+  // `_.map`.
+  _.initial = function(array, n, guard) {
+    return slice.call(array, 0, array.length - ((n == null) || guard ? 1 : n));
+  };
+
+  // Get the last element of an array. Passing **n** will return the last N
+  // values in the array. The **guard** check allows it to work with `_.map`.
+  _.last = function(array, n, guard) {
+    if (array == null) return void 0;
+    if ((n == null) || guard) {
+      return array[array.length - 1];
+    } else {
+      return slice.call(array, Math.max(array.length - n, 0));
+    }
+  };
+
+  // Returns everything but the first entry of the array. Aliased as `tail` and `drop`.
+  // Especially useful on the arguments object. Passing an **n** will return
+  // the rest N values in the array. The **guard**
+  // check allows it to work with `_.map`.
+  _.rest = _.tail = _.drop = function(array, n, guard) {
+    return slice.call(array, (n == null) || guard ? 1 : n);
+  };
+
+  // Trim out all falsy values from an array.
+  _.compact = function(array) {
+    return _.filter(array, _.identity);
+  };
+
+  // Internal implementation of a recursive `flatten` function.
+  var flatten = function(input, shallow, output) {
+    if (shallow && _.every(input, _.isArray)) {
+      return concat.apply(output, input);
+    }
+    each(input, function(value) {
+      if (_.isArray(value) || _.isArguments(value)) {
+        shallow ? push.apply(output, value) : flatten(value, shallow, output);
+      } else {
+        output.push(value);
+      }
+    });
+    return output;
+  };
+
+  // Flatten out an array, either recursively (by default), or just one level.
+  _.flatten = function(array, shallow) {
+    return flatten(array, shallow, []);
+  };
+
+  // Return a version of the array that does not contain the specified value(s).
+  _.without = function(array) {
+    return _.difference(array, slice.call(arguments, 1));
+  };
+
+  // Produce a duplicate-free version of the array. If the array has already
+  // been sorted, you have the option of using a faster algorithm.
+  // Aliased as `unique`.
+  _.uniq = _.unique = function(array, isSorted, iterator, context) {
+    if (_.isFunction(isSorted)) {
+      context = iterator;
+      iterator = isSorted;
+      isSorted = false;
+    }
+    var initial = iterator ? _.map(array, iterator, context) : array;
+    var results = [];
+    var seen = [];
+    each(initial, function(value, index) {
+      if (isSorted ? (!index || seen[seen.length - 1] !== value) : !_.contains(seen, value)) {
+        seen.push(value);
+        results.push(array[index]);
+      }
+    });
+    return results;
+  };
+
+  // Produce an array that contains the union: each distinct element from all of
+  // the passed-in arrays.
+  _.union = function() {
+    return _.uniq(_.flatten(arguments, true));
+  };
+
+  // Produce an array that contains every item shared between all the
+  // passed-in arrays.
+  _.intersection = function(array) {
+    var rest = slice.call(arguments, 1);
+    return _.filter(_.uniq(array), function(item) {
+      return _.every(rest, function(other) {
+        return _.indexOf(other, item) >= 0;
+      });
+    });
+  };
+
+  // Take the difference between one array and a number of other arrays.
+  // Only the elements present in just the first array will remain.
+  _.difference = function(array) {
+    var rest = concat.apply(ArrayProto, slice.call(arguments, 1));
+    return _.filter(array, function(value){ return !_.contains(rest, value); });
+  };
+
+  // Zip together multiple lists into a single array -- elements that share
+  // an index go together.
+  _.zip = function() {
+    var length = _.max(_.pluck(arguments, "length").concat(0));
+    var results = new Array(length);
+    for (var i = 0; i < length; i++) {
+      results[i] = _.pluck(arguments, '' + i);
+    }
+    return results;
+  };
+
+  // Converts lists into objects. Pass either a single array of `[key, value]`
+  // pairs, or two parallel arrays of the same length -- one of keys, and one of
+  // the corresponding values.
+  _.object = function(list, values) {
+    if (list == null) return {};
+    var result = {};
+    for (var i = 0, length = list.length; i < length; i++) {
+      if (values) {
+        result[list[i]] = values[i];
+      } else {
+        result[list[i][0]] = list[i][1];
+      }
+    }
+    return result;
+  };
+
+  // If the browser doesn't supply us with indexOf (I'm looking at you, **MSIE**),
+  // we need this function. Return the position of the first occurrence of an
+  // item in an array, or -1 if the item is not included in the array.
+  // Delegates to **ECMAScript 5**'s native `indexOf` if available.
+  // If the array is large and already in sort order, pass `true`
+  // for **isSorted** to use binary search.
+  _.indexOf = function(array, item, isSorted) {
+    if (array == null) return -1;
+    var i = 0, length = array.length;
+    if (isSorted) {
+      if (typeof isSorted == 'number') {
+        i = (isSorted < 0 ? Math.max(0, length + isSorted) : isSorted);
+      } else {
+        i = _.sortedIndex(array, item);
+        return array[i] === item ? i : -1;
+      }
+    }
+    if (nativeIndexOf && array.indexOf === nativeIndexOf) return array.indexOf(item, isSorted);
+    for (; i < length; i++) if (array[i] === item) return i;
+    return -1;
+  };
+
+  // Delegates to **ECMAScript 5**'s native `lastIndexOf` if available.
+  _.lastIndexOf = function(array, item, from) {
+    if (array == null) return -1;
+    var hasIndex = from != null;
+    if (nativeLastIndexOf && array.lastIndexOf === nativeLastIndexOf) {
+      return hasIndex ? array.lastIndexOf(item, from) : array.lastIndexOf(item);
+    }
+    var i = (hasIndex ? from : array.length);
+    while (i--) if (array[i] === item) return i;
+    return -1;
+  };
+
+  // Generate an integer Array containing an arithmetic progression. A port of
+  // the native Python `range()` function. See
+  // [the Python documentation](http://docs.python.org/library/functions.html#range).
+  _.range = function(start, stop, step) {
+    if (arguments.length <= 1) {
+      stop = start || 0;
+      start = 0;
+    }
+    step = arguments[2] || 1;
+
+    var length = Math.max(Math.ceil((stop - start) / step), 0);
+    var idx = 0;
+    var range = new Array(length);
+
+    while(idx < length) {
+      range[idx++] = start;
+      start += step;
+    }
+
+    return range;
+  };
+
+  // Function (ahem) Functions
+  // ------------------
+
+  // Reusable constructor function for prototype setting.
+  var ctor = function(){};
+
+  // Create a function bound to a given object (assigning `this`, and arguments,
+  // optionally). Delegates to **ECMAScript 5**'s native `Function.bind` if
+  // available.
+  _.bind = function(func, context) {
+    var args, bound;
+    if (nativeBind && func.bind === nativeBind) return nativeBind.apply(func, slice.call(arguments, 1));
+    if (!_.isFunction(func)) throw new TypeError;
+    args = slice.call(arguments, 2);
+    return bound = function() {
+      if (!(this instanceof bound)) return func.apply(context, args.concat(slice.call(arguments)));
+      ctor.prototype = func.prototype;
+      var self = new ctor;
+      ctor.prototype = null;
+      var result = func.apply(self, args.concat(slice.call(arguments)));
+      if (Object(result) === result) return result;
+      return self;
+    };
+  };
+
+  // Partially apply a function by creating a version that has had some of its
+  // arguments pre-filled, without changing its dynamic `this` context.
+  _.partial = function(func) {
+    var args = slice.call(arguments, 1);
+    return function() {
+      return func.apply(this, args.concat(slice.call(arguments)));
+    };
+  };
+
+  // Bind all of an object's methods to that object. Useful for ensuring that
+  // all callbacks defined on an object belong to it.
+  _.bindAll = function(obj) {
+    var funcs = slice.call(arguments, 1);
+    if (funcs.length === 0) throw new Error("bindAll must be passed function names");
+    each(funcs, function(f) { obj[f] = _.bind(obj[f], obj); });
+    return obj;
+  };
+
+  // Memoize an expensive function by storing its results.
+  _.memoize = function(func, hasher) {
+    var memo = {};
+    hasher || (hasher = _.identity);
+    return function() {
+      var key = hasher.apply(this, arguments);
+      return _.has(memo, key) ? memo[key] : (memo[key] = func.apply(this, arguments));
+    };
+  };
+
+  // Delays a function for the given number of milliseconds, and then calls
+  // it with the arguments supplied.
+  _.delay = function(func, wait) {
+    var args = slice.call(arguments, 2);
+    return setTimeout(function(){ return func.apply(null, args); }, wait);
+  };
+
+  // Defers a function, scheduling it to run after the current call stack has
+  // cleared.
+  _.defer = function(func) {
+    return _.delay.apply(_, [func, 1].concat(slice.call(arguments, 1)));
+  };
+
+  // Returns a function, that, when invoked, will only be triggered at most once
+  // during a given window of time. Normally, the throttled function will run
+  // as much as it can, without ever going more than once per `wait` duration;
+  // but if you'd like to disable the execution on the leading edge, pass
+  // `{leading: false}`. To disable execution on the trailing edge, ditto.
+  _.throttle = function(func, wait, options) {
+    var context, args, result;
+    var timeout = null;
+    var previous = 0;
+    options || (options = {});
+    var later = function() {
+      previous = options.leading === false ? 0 : new Date;
+      timeout = null;
+      result = func.apply(context, args);
+    };
+    return function() {
+      var now = new Date;
+      if (!previous && options.leading === false) previous = now;
+      var remaining = wait - (now - previous);
+      context = this;
+      args = arguments;
+      if (remaining <= 0) {
+        clearTimeout(timeout);
+        timeout = null;
+        previous = now;
+        result = func.apply(context, args);
+      } else if (!timeout && options.trailing !== false) {
+        timeout = setTimeout(later, remaining);
+      }
+      return result;
+    };
+  };
+
+  // Returns a function, that, as long as it continues to be invoked, will not
+  // be triggered. The function will be called after it stops being called for
+  // N milliseconds. If `immediate` is passed, trigger the function on the
+  // leading edge, instead of the trailing.
+  _.debounce = function(func, wait, immediate) {
+    var timeout, args, context, timestamp, result;
+    return function() {
+      context = this;
+      args = arguments;
+      timestamp = new Date();
+      var later = function() {
+        var last = (new Date()) - timestamp;
+        if (last < wait) {
+          timeout = setTimeout(later, wait - last);
+        } else {
+          timeout = null;
+          if (!immediate) result = func.apply(context, args);
+        }
+      };
+      var callNow = immediate && !timeout;
+      if (!timeout) {
+        timeout = setTimeout(later, wait);
+      }
+      if (callNow) result = func.apply(context, args);
+      return result;
+    };
+  };
+
+  // Returns a function that will be executed at most one time, no matter how
+  // often you call it. Useful for lazy initialization.
+  _.once = function(func) {
+    var ran = false, memo;
+    return function() {
+      if (ran) return memo;
+      ran = true;
+      memo = func.apply(this, arguments);
+      func = null;
+      return memo;
+    };
+  };
+
+  // Returns the first function passed as an argument to the second,
+  // allowing you to adjust arguments, run code before and after, and
+  // conditionally execute the original function.
+  _.wrap = function(func, wrapper) {
+    return function() {
+      var args = [func];
+      push.apply(args, arguments);
+      return wrapper.apply(this, args);
+    };
+  };
+
+  // Returns a function that is the composition of a list of functions, each
+  // consuming the return value of the function that follows.
+  _.compose = function() {
+    var funcs = arguments;
+    return function() {
+      var args = arguments;
+      for (var i = funcs.length - 1; i >= 0; i--) {
+        args = [funcs[i].apply(this, args)];
+      }
+      return args[0];
+    };
+  };
+
+  // Returns a function that will only be executed after being called N times.
+  _.after = function(times, func) {
+    return function() {
+      if (--times < 1) {
+        return func.apply(this, arguments);
+      }
+    };
+  };
+
+  // Object Functions
+  // ----------------
+
+  // Retrieve the names of an object's properties.
+  // Delegates to **ECMAScript 5**'s native `Object.keys`
+  _.keys = nativeKeys || function(obj) {
+    if (obj !== Object(obj)) throw new TypeError('Invalid object');
+    var keys = [];
+    for (var key in obj) if (_.has(obj, key)) keys.push(key);
+    return keys;
+  };
+
+  // Retrieve the values of an object's properties.
+  _.values = function(obj) {
+    var keys = _.keys(obj);
+    var length = keys.length;
+    var values = new Array(length);
+    for (var i = 0; i < length; i++) {
+      values[i] = obj[keys[i]];
+    }
+    return values;
+  };
+
+  // Convert an object into a list of `[key, value]` pairs.
+  _.pairs = function(obj) {
+    var keys = _.keys(obj);
+    var length = keys.length;
+    var pairs = new Array(length);
+    for (var i = 0; i < length; i++) {
+      pairs[i] = [keys[i], obj[keys[i]]];
+    }
+    return pairs;
+  };
+
+  // Invert the keys and values of an object. The values must be serializable.
+  _.invert = function(obj) {
+    var result = {};
+    var keys = _.keys(obj);
+    for (var i = 0, length = keys.length; i < length; i++) {
+      result[obj[keys[i]]] = keys[i];
+    }
+    return result;
+  };
+
+  // Return a sorted list of the function names available on the object.
+  // Aliased as `methods`
+  _.functions = _.methods = function(obj) {
+    var names = [];
+    for (var key in obj) {
+      if (_.isFunction(obj[key])) names.push(key);
+    }
+    return names.sort();
+  };
+
+  // Extend a given object with all the properties in passed-in object(s).
+  _.extend = function(obj) {
+    each(slice.call(arguments, 1), function(source) {
+      if (source) {
+        for (var prop in source) {
+          obj[prop] = source[prop];
+        }
+      }
+    });
+    return obj;
+  };
+
+  // Return a copy of the object only containing the whitelisted properties.
+  _.pick = function(obj) {
+    var copy = {};
+    var keys = concat.apply(ArrayProto, slice.call(arguments, 1));
+    each(keys, function(key) {
+      if (key in obj) copy[key] = obj[key];
+    });
+    return copy;
+  };
+
+   // Return a copy of the object without the blacklisted properties.
+  _.omit = function(obj) {
+    var copy = {};
+    var keys = concat.apply(ArrayProto, slice.call(arguments, 1));
+    for (var key in obj) {
+      if (!_.contains(keys, key)) copy[key] = obj[key];
+    }
+    return copy;
+  };
+
+  // Fill in a given object with default properties.
+  _.defaults = function(obj) {
+    each(slice.call(arguments, 1), function(source) {
+      if (source) {
+        for (var prop in source) {
+          if (obj[prop] === void 0) obj[prop] = source[prop];
+        }
+      }
+    });
+    return obj;
+  };
+
+  // Create a (shallow-cloned) duplicate of an object.
+  _.clone = function(obj) {
+    if (!_.isObject(obj)) return obj;
+    return _.isArray(obj) ? obj.slice() : _.extend({}, obj);
+  };
+
+  // Invokes interceptor with the obj, and then returns obj.
+  // The primary purpose of this method is to "tap into" a method chain, in
+  // order to perform operations on intermediate results within the chain.
+  _.tap = function(obj, interceptor) {
+    interceptor(obj);
+    return obj;
+  };
+
+  // Internal recursive comparison function for `isEqual`.
+  var eq = function(a, b, aStack, bStack) {
+    // Identical objects are equal. `0 === -0`, but they aren't identical.
+    // See the [Harmony `egal` proposal](http://wiki.ecmascript.org/doku.php?id=harmony:egal).
+    if (a === b) return a !== 0 || 1 / a == 1 / b;
+    // A strict comparison is necessary because `null == undefined`.
+    if (a == null || b == null) return a === b;
+    // Unwrap any wrapped objects.
+    if (a instanceof _) a = a._wrapped;
+    if (b instanceof _) b = b._wrapped;
+    // Compare `[[Class]]` names.
+    var className = toString.call(a);
+    if (className != toString.call(b)) return false;
+    switch (className) {
+      // Strings, numbers, dates, and booleans are compared by value.
+      case '[object String]':
+        // Primitives and their corresponding object wrappers are equivalent; thus, `"5"` is
+        // equivalent to `new String("5")`.
+        return a == String(b);
+      case '[object Number]':
+        // `NaN`s are equivalent, but non-reflexive. An `egal` comparison is performed for
+        // other numeric values.
+        return a != +a ? b != +b : (a == 0 ? 1 / a == 1 / b : a == +b);
+      case '[object Date]':
+      case '[object Boolean]':
+        // Coerce dates and booleans to numeric primitive values. Dates are compared by their
+        // millisecond representations. Note that invalid dates with millisecond representations
+        // of `NaN` are not equivalent.
+        return +a == +b;
+      // RegExps are compared by their source patterns and flags.
+      case '[object RegExp]':
+        return a.source == b.source &&
+               a.global == b.global &&
+               a.multiline == b.multiline &&
+               a.ignoreCase == b.ignoreCase;
+    }
+    if (typeof a != 'object' || typeof b != 'object') return false;
+    // Assume equality for cyclic structures. The algorithm for detecting cyclic
+    // structures is adapted from ES 5.1 section 15.12.3, abstract operation `JO`.
+    var length = aStack.length;
+    while (length--) {
+      // Linear search. Performance is inversely proportional to the number of
+      // unique nested structures.
+      if (aStack[length] == a) return bStack[length] == b;
+    }
+    // Objects with different constructors are not equivalent, but `Object`s
+    // from different frames are.
+    var aCtor = a.constructor, bCtor = b.constructor;
+    if (aCtor !== bCtor && !(_.isFunction(aCtor) && (aCtor instanceof aCtor) &&
+                             _.isFunction(bCtor) && (bCtor instanceof bCtor))) {
+      return false;
+    }
+    // Add the first object to the stack of traversed objects.
+    aStack.push(a);
+    bStack.push(b);
+    var size = 0, result = true;
+    // Recursively compare objects and arrays.
+    if (className == '[object Array]') {
+      // Compare array lengths to determine if a deep comparison is necessary.
+      size = a.length;
+      result = size == b.length;
+      if (result) {
+        // Deep compare the contents, ignoring non-numeric properties.
+        while (size--) {
+          if (!(result = eq(a[size], b[size], aStack, bStack))) break;
+        }
+      }
+    } else {
+      // Deep compare objects.
+      for (var key in a) {
+        if (_.has(a, key)) {
+          // Count the expected number of properties.
+          size++;
+          // Deep compare each member.
+          if (!(result = _.has(b, key) && eq(a[key], b[key], aStack, bStack))) break;
+        }
+      }
+      // Ensure that both objects contain the same number of properties.
+      if (result) {
+        for (key in b) {
+          if (_.has(b, key) && !(size--)) break;
+        }
+        result = !size;
+      }
+    }
+    // Remove the first object from the stack of traversed objects.
+    aStack.pop();
+    bStack.pop();
+    return result;
+  };
+
+  // Perform a deep comparison to check if two objects are equal.
+  _.isEqual = function(a, b) {
+    return eq(a, b, [], []);
+  };
+
+  // Is a given array, string, or object empty?
+  // An "empty" object has no enumerable own-properties.
+  _.isEmpty = function(obj) {
+    if (obj == null) return true;
+    if (_.isArray(obj) || _.isString(obj)) return obj.length === 0;
+    for (var key in obj) if (_.has(obj, key)) return false;
+    return true;
+  };
+
+  // Is a given value a DOM element?
+  _.isElement = function(obj) {
+    return !!(obj && obj.nodeType === 1);
+  };
+
+  // Is a given value an array?
+  // Delegates to ECMA5's native Array.isArray
+  _.isArray = nativeIsArray || function(obj) {
+    return toString.call(obj) == '[object Array]';
+  };
+
+  // Is a given variable an object?
+  _.isObject = function(obj) {
+    return obj === Object(obj);
+  };
+
+  // Add some isType methods: isArguments, isFunction, isString, isNumber, isDate, isRegExp.
+  each(['Arguments', 'Function', 'String', 'Number', 'Date', 'RegExp'], function(name) {
+    _['is' + name] = function(obj) {
+      return toString.call(obj) == '[object ' + name + ']';
+    };
+  });
+
+  // Define a fallback version of the method in browsers (ahem, IE), where
+  // there isn't any inspectable "Arguments" type.
+  if (!_.isArguments(arguments)) {
+    _.isArguments = function(obj) {
+      return !!(obj && _.has(obj, 'callee'));
+    };
+  }
+
+  // Optimize `isFunction` if appropriate.
+  if (typeof (/./) !== 'function') {
+    _.isFunction = function(obj) {
+      return typeof obj === 'function';
+    };
+  }
+
+  // Is a given object a finite number?
+  _.isFinite = function(obj) {
+    return isFinite(obj) && !isNaN(parseFloat(obj));
+  };
+
+  // Is the given value `NaN`? (NaN is the only number which does not equal itself).
+  _.isNaN = function(obj) {
+    return _.isNumber(obj) && obj != +obj;
+  };
+
+  // Is a given value a boolean?
+  _.isBoolean = function(obj) {
+    return obj === true || obj === false || toString.call(obj) == '[object Boolean]';
+  };
+
+  // Is a given value equal to null?
+  _.isNull = function(obj) {
+    return obj === null;
+  };
+
+  // Is a given variable undefined?
+  _.isUndefined = function(obj) {
+    return obj === void 0;
+  };
+
+  // Shortcut function for checking if an object has a given property directly
+  // on itself (in other words, not on a prototype).
+  _.has = function(obj, key) {
+    return hasOwnProperty.call(obj, key);
+  };
+
+  // Utility Functions
+  // -----------------
+
+  // Run Underscore.js in *noConflict* mode, returning the `_` variable to its
+  // previous owner. Returns a reference to the Underscore object.
+  _.noConflict = function() {
+    root._ = previousUnderscore;
+    return this;
+  };
+
+  // Keep the identity function around for default iterators.
+  _.identity = function(value) {
+    return value;
+  };
+
+  // Run a function **n** times.
+  _.times = function(n, iterator, context) {
+    var accum = Array(Math.max(0, n));
+    for (var i = 0; i < n; i++) accum[i] = iterator.call(context, i);
+    return accum;
+  };
+
+  // Return a random integer between min and max (inclusive).
+  _.random = function(min, max) {
+    if (max == null) {
+      max = min;
+      min = 0;
+    }
+    return min + Math.floor(Math.random() * (max - min + 1));
+  };
+
+  // List of HTML entities for escaping.
+  var entityMap = {
+    escape: {
+      '&': '&amp;',
+      '<': '&lt;',
+      '>': '&gt;',
+      '"': '&quot;',
+      "'": '&#x27;'
+    }
+  };
+  entityMap.unescape = _.invert(entityMap.escape);
+
+  // Regexes containing the keys and values listed immediately above.
+  var entityRegexes = {
+    escape:   new RegExp('[' + _.keys(entityMap.escape).join('') + ']', 'g'),
+    unescape: new RegExp('(' + _.keys(entityMap.unescape).join('|') + ')', 'g')
+  };
+
+  // Functions for escaping and unescaping strings to/from HTML interpolation.
+  _.each(['escape', 'unescape'], function(method) {
+    _[method] = function(string) {
+      if (string == null) return '';
+      return ('' + string).replace(entityRegexes[method], function(match) {
+        return entityMap[method][match];
+      });
+    };
+  });
+
+  // If the value of the named `property` is a function then invoke it with the
+  // `object` as context; otherwise, return it.
+  _.result = function(object, property) {
+    if (object == null) return void 0;
+    var value = object[property];
+    return _.isFunction(value) ? value.call(object) : value;
+  };
+
+  // Add your own custom functions to the Underscore object.
+  _.mixin = function(obj) {
+    each(_.functions(obj), function(name) {
+      var func = _[name] = obj[name];
+      _.prototype[name] = function() {
+        var args = [this._wrapped];
+        push.apply(args, arguments);
+        return result.call(this, func.apply(_, args));
+      };
+    });
+  };
+
+  // Generate a unique integer id (unique within the entire client session).
+  // Useful for temporary DOM ids.
+  var idCounter = 0;
+  _.uniqueId = function(prefix) {
+    var id = ++idCounter + '';
+    return prefix ? prefix + id : id;
+  };
+
+  // By default, Underscore uses ERB-style template delimiters, change the
+  // following template settings to use alternative delimiters.
+  _.templateSettings = {
+    evaluate    : /<%([\s\S]+?)%>/g,
+    interpolate : /<%=([\s\S]+?)%>/g,
+    escape      : /<%-([\s\S]+?)%>/g
+  };
+
+  // When customizing `templateSettings`, if you don't want to define an
+  // interpolation, evaluation or escaping regex, we need one that is
+  // guaranteed not to match.
+  var noMatch = /(.)^/;
+
+  // Certain characters need to be escaped so that they can be put into a
+  // string literal.
+  var escapes = {
+    "'":      "'",
+    '\\':     '\\',
+    '\r':     'r',
+    '\n':     'n',
+    '\t':     't',
+    '\u2028': 'u2028',
+    '\u2029': 'u2029'
+  };
+
+  var escaper = /\\|'|\r|\n|\t|\u2028|\u2029/g;
+
+  // JavaScript micro-templating, similar to John Resig's implementation.
+  // Underscore templating handles arbitrary delimiters, preserves whitespace,
+  // and correctly escapes quotes within interpolated code.
+  _.template = function(text, data, settings) {
+    var render;
+    settings = _.defaults({}, settings, _.templateSettings);
+
+    // Combine delimiters into one regular expression via alternation.
+    var matcher = new RegExp([
+      (settings.escape || noMatch).source,
+      (settings.interpolate || noMatch).source,
+      (settings.evaluate || noMatch).source
+    ].join('|') + '|$', 'g');
+
+    // Compile the template source, escaping string literals appropriately.
+    var index = 0;
+    var source = "__p+='";
+    text.replace(matcher, function(match, escape, interpolate, evaluate, offset) {
+      source += text.slice(index, offset)
+        .replace(escaper, function(match) { return '\\' + escapes[match]; });
+
+      if (escape) {
+        source += "'+\n((__t=(" + escape + "))==null?'':_.escape(__t))+\n'";
+      }
+      if (interpolate) {
+        source += "'+\n((__t=(" + interpolate + "))==null?'':__t)+\n'";
+      }
+      if (evaluate) {
+        source += "';\n" + evaluate + "\n__p+='";
+      }
+      index = offset + match.length;
+      return match;
+    });
+    source += "';\n";
+
+    // If a variable is not specified, place data values in local scope.
+    if (!settings.variable) source = 'with(obj||{}){\n' + source + '}\n';
+
+    source = "var __t,__p='',__j=Array.prototype.join," +
+      "print=function(){__p+=__j.call(arguments,'');};\n" +
+      source + "return __p;\n";
+
+    try {
+      render = new Function(settings.variable || 'obj', '_', source);
+    } catch (e) {
+      e.source = source;
+      throw e;
+    }
+
+    if (data) return render(data, _);
+    var template = function(data) {
+      return render.call(this, data, _);
+    };
+
+    // Provide the compiled function source as a convenience for precompilation.
+    template.source = 'function(' + (settings.variable || 'obj') + '){\n' + source + '}';
+
+    return template;
+  };
+
+  // Add a "chain" function, which will delegate to the wrapper.
+  _.chain = function(obj) {
+    return _(obj).chain();
+  };
+
+  // OOP
+  // ---------------
+  // If Underscore is called as a function, it returns a wrapped object that
+  // can be used OO-style. This wrapper holds altered versions of all the
+  // underscore functions. Wrapped objects may be chained.
+
+  // Helper function to continue chaining intermediate results.
+  var result = function(obj) {
+    return this._chain ? _(obj).chain() : obj;
+  };
+
+  // Add all of the Underscore functions to the wrapper object.
+  _.mixin(_);
+
+  // Add all mutator Array functions to the wrapper.
+  each(['pop', 'push', 'reverse', 'shift', 'sort', 'splice', 'unshift'], function(name) {
+    var method = ArrayProto[name];
+    _.prototype[name] = function() {
+      var obj = this._wrapped;
+      method.apply(obj, arguments);
+      if ((name == 'shift' || name == 'splice') && obj.length === 0) delete obj[0];
+      return result.call(this, obj);
+    };
+  });
+
+  // Add all accessor Array functions to the wrapper.
+  each(['concat', 'join', 'slice'], function(name) {
+    var method = ArrayProto[name];
+    _.prototype[name] = function() {
+      return result.call(this, method.apply(this._wrapped, arguments));
+    };
+  });
+
+  _.extend(_.prototype, {
+
+    // Start chaining a wrapped Underscore object.
+    chain: function() {
+      this._chain = true;
+      return this;
+    },
+
+    // Extracts the result from a wrapped and chained object.
+    value: function() {
+      return this._wrapped;
+    }
+
+  });
+
+}).call(this);

annotations/templates/annotations/demo.html

+{% load staticfiles %}
+<!DOCTYPE html>
+<!--[if lt IE 7]>      <html lang="en" class="no-js lt-ie9 lt-ie8 lt-ie7"> <![endif]-->
+<!--[if IE 7]>         <html lang="en" class="no-js lt-ie9 lt-ie8"> <![endif]-->
+<!--[if IE 8]>         <html lang="en" class="no-js lt-ie9"> <![endif]-->
+<!--[if gt IE 8]><!-->
+<html lang="en" class="no-js">
+<!--<![endif]-->
+    <head>
+        <meta charset="utf-8">
+        <meta http-equiv="X-UA-Compatible" content="IE=edge">
+        <title>Gargantext corpus annotations editor</title>
+        <meta name="description" content="">
+        <meta name="viewport" content="width=device-width, initial-scale=1">
+        <link rel="stylesheet" href="{% static 'bower_components/bootstrap/dist/css/bootstrap.min.css' %}">
+        <link rel="stylesheet" href="{% static 'bower_components/angular/angular-csp.css' %}">
+        <link rel="stylesheet" href="{% static 'annotations/app.css' %}">
+        <script src="{% static 'bower_components/jquery/dist/jquery.min.js' %}"></script>
+    </head>
+    <body>
+    <!-- TODO integrate this later into the corpus.html django template -->
+    <div id="annotationsApp">
+      <div class="container-fluid">
+        <div class="row-fluid main-panel" ng-controller="IntraTextController">
+          <div class="col-md-4 col-xs-4 tabbable words-panel">
+            <ul class="nav nav-tabs">
+              <li class="active"><a href="#tab1" data-toggle="tab">Miamwords</a></li>
+              <li><a href="#tab2" data-toggle="tab">Local stopwords</a></li>
+            </ul>
+            <div class="tab-content">
+              <div class="tab-pane active" id="tab1">
+                <ul class="list-group words-list">
+                  <div ng-if="extra_miamlist.length == 0" class="alert alert-info" role="alert">No extra-text miam-word yet</div>
+
+                  <li ng-repeat="keyword in extra_miamlist | startFrom:currentMiamPage*pageSize | limitTo:pageSize" class="list-group-item">
+                    <div ng-controller="ExtraAnnotationController" keyword-template class="keyword-container"></div>
+                  </li>
+                </ul>
+                <nav ng-class="{invisible: numMiamPages() - 1 == 0}" class="clearfix">
+                  <ul class="pagination pagination-s pull-right words-pagination">
+                    <li ng-class="{disabled: currentMiamPage == 0}"><a ng-click="previousMiamPage()" class="glyphicon glyphicon-backward"></a></li>
+                    <li ng-class="{disabled: currentMiamPage >= numMiamPages()-1}"><a ng-click="nextMiamPage()" class="glyphicon glyphicon-forward"></a></li>
+                  </ul>
+                </nav>
+                <div class="form-group">
+                  <input type="text" class="form-control" id="miamlist-input" ng-keypress="onMiamlistSubmit($event)">
+                  <button type="submit" class="btn btn-default btn-primary" ng-click="onMiamlistSubmit($event)">Add</button>
+                </div>
+              </div>
+              <div class="tab-pane" id="tab2">
+                <ul class="list-group words-list clearfix">
+                  <div ng-if="extra_stoplist.length == 0" class="alert alert-info" role="alert">No extra-text stop-word yet</div>
+                  <li ng-repeat="keyword in extra_stoplist | startFrom:currentStopPage*pageSize | limitTo:pageSize" class="list-group-item"><div ng-controller="ExtraAnnotationController" keyword-template></div></li>
+                </ul>
+                <nav ng-class="{invisible: numStopPages() - 1 == 0}" class="clearfix">
+                  <ul class="pagination pagination-s pull-right words-pagination">
+                    <li ng-class="{disabled: currentStopPage == 0}"><a ng-click="previousStopPage()" class="glyphicon glyphicon-backward"></a></li>
+                    <li ng-class="{disabled: currentStopPage >= numStopPages()-1}"><a ng-click="nextStopPage()" class="glyphicon glyphicon-forward"></a></li>
+                  </ul>
+                </nav>
+                <div class="form-group">
+                  <input type="text" class="form-control" id="stoplist-input" ng-keypress="onStoplistSubmit($event)">
+                  <button type="submit" class="btn btn-default" ng-click="onStoplistSubmit($event)">Exclude</button>
+                </div>
+              </div>
+            </div>
+          </div>
+          <div class="col-md-8 col-xs-8 text-panel" ng-controller="DocController" id="document">
+            <div class="row-fluid clearfix">
+            <div class="col-md-7 col-xs-7">
+              <h3>{[{title}]}</h3>
+            </div>
+            <div class="col-md-5 col-xs-5">
+              <nav>
+                <ul class="pager">
+                  <li ng-if="current_page_number > 1"><a ng-click="onPreviousClick()" href="#">Previous</a></li>
+                  <li ng-if="current_page_number < last_page_number"><a ng-click="onNextClick()" href="#">Next</a></li>
+                </ul>
+              </nav>
+            </div>
+            </div>
+            <div class="row-fluid cleafix">
+              <ul class="breadcrumb">
+                <li>{[{authors}]}</li>
+                <li>{[{journal}]}</li>
+                <li class="active pull-right">{[{publication_date}]}</li>
+              </ul>
+            </div>
+            <h4>Abstract</h4>
+            <p id="abstract-text" class="text-container"></p>
+            <h4>Article</h4>
+            <p id="full-text" class="text-container"></p>
+          </div>
+        </div> <!-- end of the main row -->
+      </div>
+      <!-- this menu is over the text -->
+      <div ng-controller="AnnotationMenuController" id="selection" class="selection-menu" selection-template></div>
+    </div>
+    <!--[if lt IE 7]>
+    <p class="browsehappy">You are using an <strong>outdated</strong> browser. Please <a href="http://browsehappy.com/">upgrade your browser</a> to improve your experience.</p>
+<![endif]-->
+  <script type="application/javascript">
+    window.STATIC_URL = "{% static '' %}";
+    window.ANNOTATION_API_URL = "{{ api_url }}";
+  </script>
+  <script src="{% static 'annotations/main.js' %}"></script>
+
+  </body>
+</html>

annotations/urls.py

+from django.conf.urls import patterns, url
+from annotations import views
+
+
+urlpatterns = patterns('',
+    url(r'^demo/$', views.demo),
+    url(r'^document/(?P<doc_id>[0-9]+)$', views.Document.as_view()), # document view
+    #url(r'^document/(?P<doc_id>[0-9]+)/ngrams/(?P<ngram_id>[0-9]+)$', views.DocumentNgram.as_view()),  # actions on ngram from a document
+    url(r'^lists/(?P<list_id>[0-9]+)$', views.NgramList.as_view()), # actions on list filtered by document
+    url(r'^lists/(?P<list_id>[0-9]+)/ngrams(?:/(?P<ngram_id>[0-9]+))?$', views.Ngram.as_view()), # actions on ngram from a list optionally filtered by document
+)

annotations/views.py

+from urllib.parse import urljoin
+import json
+
+from django.shortcuts import render_to_response
+from django.template import RequestContext
+
+from rest_framework.views import APIView
+from rest_framework.response import Response
+from rest_framework.renderers import JSONRenderer
+
+from node.models import Node
+from gargantext_web.db import *
+
+
+def demo(request):
+    """Demo page, temporary"""
+    return render_to_response('annotations/demo.html', {
+        'api_url': urljoin(request.get_host(), '/annotations/')
+    }, context_instance=RequestContext(request))
+
+
+class Document(APIView):
+    """Read-only Document"""
+    renderer_classes = (JSONRenderer,)
+
+    def get(self, request, doc_id):
+        """Document by ID"""
+        node = session.query(Node).filter(Node.id == doc_id).first()
+        # TODO 404 if not Document or ID not found
+        data = {
+            'title': node.hyperdata.get('title'),
+            'authors': node.hyperdata.get('authors'),
+            'journal': node.hyperdata.get('journal'),
+            'publication_date': node.hyperdata.get('publication_date'),
+            'full_text': node.hyperdata.get('full_text'),
+            'abstract_text': node.hyperdata.get('abstract'),
+            'id': node.id,
+            'current_page_number': 4, # TODO remove, this is client side
+            'last_page_number': 30 # TODO remove, this is client side
+        }
+        # return formatted result
+        return Response(data)
+
+class NgramList(APIView):
+    """Read and Write Annotations"""
+    renderer_classes = (JSONRenderer,)
+
+    def get(self, request, list_id):
+        """Get All for on List ID"""
+        doc_id = request.GET.get('docId')
+        # TODO DB query
+        data = { '%s' % list_id : { '%s' % doc_id : [
+            {
+                'uuid': '1',
+                'text': 'what',
+                'category': 'stoplist',
+                'level': 'global',
+                'occurrences': 1
+            },
+            {
+                'uuid': '2',
+                'text': 'rotations',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '3',
+                'text': 'etsy',
+                'category': 'stoplist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '4',
+                'text': 'employees',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '5',
+                'text': '2010',
+                'category': 'stoplist',
+                'level': 'global',
+                'occurrences': 1
+            },
+            {
+                'uuid': '6',
+                'text': 'stoplist keyword',
+                'category': 'stoplist',
+                'level': 'local',
+                'occurrences': 255
+            },
+            {
+                'uuid': '7',
+                'text': 'another stoplist keyword',
+                'category': 'stoplist',
+                'level': 'local',
+                'occurrences': 23
+            },
+            {
+                'uuid': '8',
+                'text': 'dmc-gm5',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '9',
+                'text': 'scale of the GM-series',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '10',
+                'text': 'engineering rotations',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '11',
+                'text': 'pixel electronic viewfinder',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '12',
+                'text': 'viewfinder',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '13',
+                'text': 'pixel electronic',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '14',
+                'text': 'GM',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '15',
+                'text': 'support rotations',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '16',
+                'text': 'miamlist keyword',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '17',
+                'text': 'miamlist keyword',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 1
+            },
+            {
+                'uuid': '18',
+                'text': 'another miamlist keyword',
+                'category': 'miamlist',
+                'level': 'local',
+                'occurrences': 3
+            }
+        ]}}
+        return Response(data)
+
+
+class Ngram(APIView):
+    """Read and Write Annotations"""
+    renderer_classes = (JSONRenderer,)
+
+    def delete(self, request, list_id, ngram_id):
+        """
+        TODO Delete one annotation by id
+        associated with one Document (remove edge)
+        """
+        doc_id = request.GET.get('docId')
+        annotationId = request.GET.get("annotationId")
+        print(annotationDict)
+        # TODO DB query
+        return Response({})
+
+    def post(self, request, list_id, ngram_id):
+        """
+        TODO update one annotation (document level)
+        associated with one Document (add edge)
+        """
+        doc_id = request.GET.get('docId')
+        annotationDict = json.loads(request.POST.get("annotation"))
+        print(annotationDict)
+        # TODO DB query
+        return Response(annotationDict)

gargantext_web/api.py

@@ -3,16 +3,12 @@ from django.core.exceptions import PermissionDenied, SuspiciousOperation
 from django.core.exceptions import ValidationError
 from django.core.urlresolvers import reverse
 
-from django.db.models import Avg, Max, Min, Count, Sum
-# from node.models import Language, ResourceType, Resource
-# from node.models import Node, NodeType, Node_Resource, Project, Corpus
-
 from sqlalchemy import text, distinct, or_
 from sqlalchemy.sql import func
 from sqlalchemy.orm import aliased
 
 from gargantext_web.views import move_to_trash
-from .db import *
+from gargantext_web.db import *
 from node import models
 
 

gargantext_web/db.py

@@ -2,7 +2,6 @@ from django.conf import settings
 
 from node import models
 
-
 __all__ = ['literalquery', 'session', 'cache', 'Session', 'bulk_insert', 'engine', 'get_cursor', 'User']
 
 

gargantext_web/home.py

@@ -10,17 +10,17 @@ def paragraph_lorem(size_target=450):
     Function that returns paragraph with false latin language.
     size_target is the number of random words that will be given.
     '''
-    
+
     lorem = random_words.LoremIpsum()
-    
+
     sentences_list = lorem.get_sentences_list(sentences=5)
     paragraph_size = 0
-    
+
     while paragraph_size < size_target :
         sentences_list.append(lorem.get_sentence())
         paragraph = ' '.join(sentences_list)
         paragraph_size = len(paragraph)
-    
+
     return(paragraph)
 
 
@@ -29,48 +29,48 @@ def paragraph_gargantua(size_target=500):
     Function that returns paragraph with chapter titles of Gargantua.
     size_target is the number of random words that will be given.
     '''
-    
+
     paragraph = list()
     paragraph_size = 0
     chapter_number = 1
-    
+
     while paragraph_size < size_target and chapter_number < 6:
         chapitre = open('/srv/gargantext/static/docs/gargantua_book/gargantua_chapter_' + str(chapter_number) + '.txt', 'r')
         paragraph.append(random.choice(chapitre.readlines()).strip())
         chapitre.close()
         paragraph_size = len(' '.join(paragraph))
         chapter_number += 1
-    
+
     return(' '.join(paragraph))
 
 
 def random_letter(mot, size_min=5):
     '''
-    
-    Functions that randomize order letters of a 
+
+    Functions that randomize order letters of a
     word which size is greater that size_min.
 
     '''
     if len(mot) > size_min:
-        
+
         size = round(len(mot) / pi)
-        
+
         first_letters = mot[:size]
         last_letters  = mot[-size:]
-        
+
         others_letters = list(mot[size:-size])
         random.shuffle(others_letters)
-        
+
         mot_list = list()
         mot_list.append(first_letters)
-        
+
         for letter in others_letters:
             mot_list.append(letter)
-            
+
         mot_list.append(last_letters)
-        
-        return(''.join(mot_list))  
-        
+
+        return(''.join(mot_list))
+
     else:
         return(mot)
 
@@ -86,4 +86,3 @@ def paragraph_tutoreil(tutoriel=tutoriel):
     paragraph = ' '.join([ random_letter(mot) for mot in tutoriel.split(" ")]) \
             + ": comptexter avec Gargantext."
     return(paragraph)
-

gargantext_web/settings.py

@@ -10,6 +10,7 @@ https://docs.djangoproject.com/en/1.6/ref/settings/
 
 # Build paths inside the project like this: os.path.join(BASE_DIR, ...)
 import os
+
 BASE_DIR = os.path.dirname(os.path.dirname(__file__))
 PROJECT_PATH = os.path.join(BASE_DIR, os.pardir)
 PROJECT_PATH = os.path.abspath(PROJECT_PATH)
@@ -60,12 +61,6 @@ TEMPLATE_DIRS = (
     # Always use forward slashes
     # Don't forget to use absolute paths, not relative paths.
     '/srv/gargantext/templates',
-
-#import os.path
-#
-#TEMPLATE_DIRS = (
-#    os.path.join(os.path.dirname(__file__), 'templates').replace('\\','/'),
-#)
 )
 
 
@@ -99,6 +94,7 @@ INSTALLED_APPS = (
     'cte_tree',
     'node',
     'ngram',
+    'annotations',
     'scrappers.scrap_pubmed',
     'djcelery',
     'aldjemy',
@@ -194,3 +190,9 @@ TEMPLATE_CONTEXT_PROCESSORS = (
 
 # grappelli custom
 GRAPPELLI_ADMIN_TITLE = "Gargantext"
+
+if DEBUG is True or 'GARGANTEXT_DEBUG' in os.environ:
+    try:
+        from gargantext_web.local_settings import *
+    except ImportError:
+        pass

gargantext_web/urls.py

@@ -4,7 +4,7 @@ from django.contrib import admin
 from django.contrib.auth.views import login
 
 from gargantext_web import views, views_optimized
-
+from annotations import urls as annotations_urls
 import gargantext_web.api
 import scrappers.scrap_pubmed.views as pubmedscrapper
 
@@ -64,6 +64,8 @@ urlpatterns = patterns('',
 
     url(r'^api/nodes/(\d+)/ngrams$', gargantext_web.api.CorpusController.ngrams),
 
+    url(r'^annotations/', include(annotations_urls)),
+
     # Provisory tests
     url(r'^ngrams$', views.ngrams),  # to be removed
     url(r'^nodeinfo/(\d+)$', views.nodeinfo), # to be removed ?
@@ -101,5 +103,3 @@ if settings.MAINTENANCE:
 
     url(r'^.*', views.get_maintenance),
     )
-
-

gargantext_web/views.py

@@ -7,10 +7,6 @@ from django.template.loader import get_template
 from django.template import Context
 
 from node import models
-#from node.models import Language, ResourceType, Resource, \
-#        Node, NodeType, Node_Resource, Project, Corpus, \
-#        Ngram, Node_Ngram, NodeNgramNgram, NodeNodeNgram
-
 from node.admin import CorpusForm, ProjectForm, ResourceForm, CustomForm
 
 from django.contrib.auth.models import User
@@ -699,5 +695,3 @@ def nodeinfo(request , node_id):
         'node_id' : node_id,
     }))
     return HttpResponse(html)
-
-

init/README.rst

@@ -4,7 +4,7 @@ Install the requirements
 1)  Install all the Debian packages listed in dependances.deb
     (also: sudo apt-get install postgresql-contrib)
 
-2)  Create a Pythton virtual enironnement
+2)  Create a Python virtual enironnement
 
     On Debian:
     ---------

init/init_gargantext.py

@@ -26,7 +26,6 @@ from gargantext_web.db import *
 #    print('Empty table "%s"...' % (table._meta.db_table, ))
 #    table.objects.all().delete()
 
-
 # Integration: hyperdata types
 
 print('Initialize hyperdata...')
@@ -43,8 +42,8 @@ hyperdata = {
     'doi': 'string',
     'journal': 'string',
 }
-for name, type in hyperdata.items():
-    models.Hyperdata(name=name, type=type).save()
+for name, type_name in hyperdata.items():
+    models.Hyperdata(name=name, type=type_name).save()
 
 
 # Integration: languages
@@ -66,7 +65,7 @@ for language in pycountry.languages:
 
 print('Initialize users...')
 me = models.User.objects.get_or_create(username='alexandre')
-gargantua = models.User.objects.get_or_create(username='gargantua')
+gargantua, created = models.User.objects.get_or_create(username='gargantua')
 node_root = Node(user_id=gargantua.id, type_id=cache.NodeType['Root'].id, name='Root')
 node_stem = Node(user_id=gargantua.id, type_id=cache.NodeType['Stem'].id, name='Stem', parent_id=node_root.id)
 node_lem = Node(user_id=gargantua.id, type_id=cache.NodeType['Lem'].id, name='Lem', parent_id=node_root.id)
@@ -82,9 +81,9 @@ print('Initialize node types...')
 
 node_types = [
         'Root', 'Trash',
-        'Project', 'Corpus', 'Document', 
-        'Stem', 'Lem', 'Tfidf', 
-        'Synonym', 
+        'Project', 'Corpus', 'Document',
+        'Stem', 'Lem', 'Tfidf',
+        'Synonym',
         'MiamList', 'StopList',
         'Cooccurrence', 'WhiteList', 'BlackList'
         ]

init/install/2-requirements.txt

@@ -7,7 +7,7 @@ Pygments==1.6
 RandomWords==0.1.12
 SQLAlchemy==0.9.9
 South==1.0
-aldjemy==0.3.10
+-e git+https://github.com/mathieurodic/aldjemy.git@master#egg=aldjemy
 amqp==1.4.6
 anyjson==0.3.3
 bibtexparser==0.6.0