[LEARN] model saving tools.

package.yaml

@@ -142,6 +142,7 @@ library:
   - protolude
   - pureMD5
   - SHA
+  - random
   - rake
   - regex-compat
   - resourcet

src/Gargantext/API/Node.hs

@@ -32,8 +32,9 @@ module Gargantext.API.Node
   , HyperdataDocumentV3(..)
   ) where
 
-import Control.Lens (prism', set)
+import Control.Lens (prism', set, view)
 import Control.Monad ((>>))
+import Control.Monad.Reader (ask)
 import Control.Monad.IO.Class (liftIO)
 import Data.Aeson (FromJSON, ToJSON)
 import Data.Swagger
@@ -59,6 +60,7 @@ import Gargantext.Database.Types.Node
 import Gargantext.Database.Types.Node (CorpusId, ContactId)
 import Gargantext.Database.Utils -- (Cmd, CmdM)
 import Gargantext.Prelude
+import Gargantext.API.Settings
 import Gargantext.Text.Metrics
 import Gargantext.Viz.Graph hiding (Node)-- (Graph(_graph_metadata),LegendField(..), GraphMetadata(..),readGraphFromJson,defaultGraph)
 import Gargantext.Viz.Graph.Tools (cooc2graph)
@@ -68,8 +70,8 @@ import Test.QuickCheck.Arbitrary (Arbitrary, arbitrary)
 import qualified Data.Map as Map
 import qualified Gargantext.Database.Node.Update as U (update, Update(..))
 
---import qualified Gargantext.Text.List.Learn as Learn
---import qualified Data.Vector as Vec
+import qualified Gargantext.Text.List.Learn as Learn
+import qualified Data.Vector as Vec
 
 type GargServer api =
   forall env m.
@@ -404,11 +406,12 @@ getMetrics cId maybeListId tabType maybeLimit = do
     listType t m = maybe (panic errorMsg) fst $ Map.lookup t m
     errorMsg     = "API.Node.metrics: key absent"
   
-  --{-
-  --let metrics' = Map.fromListWith (<>) $ map (\(Metric _ s1 s2 lt) -> (lt, [Vec.fromList [s1,s2]])) metrics
-  --_ <- liftIO $ Learn.grid metrics'
+  {-
+  let metrics' = Map.fromListWith (<>) $ map (\(Metric _ s1 s2 lt) -> (lt, [Vec.fromList [s1,s2]])) metrics
+  _ <- liftIO $ Learn.grid metrics'
+  en <- ask
+  printDebug "path" $  _fileFolder $ _env_settings en
   --}
-
   pure $ Metrics metrics
 
 

src/Gargantext/API/Settings.hs

@@ -80,6 +80,7 @@ data Settings = Settings
     , _jwtSecret       :: Jose.Jwk -- ^ key from the jose-jwt package
     , _sendLoginEmails :: SendEmailType
     , _scrapydUrl      :: BaseUrl
+    , _fileFolder      :: FilePath
     }
 
 makeLenses ''Settings
@@ -107,6 +108,7 @@ devSettings = Settings
     , _jwtSecret = parseJwk "MVg0YAPVSPiYQc/qIs/rV/X32EFR0zOJWfHFgMbszMw="
     , _sendLoginEmails = LogEmailToConsole
     , _scrapydUrl = fromMaybe (panic "Invalid scrapy URL") $ parseBaseUrl "http://localhost:6800"
+    , _fileFolder = "data"
     }
 
 

src/Gargantext/Database/Config.hs

@@ -38,7 +38,6 @@ userMaster = "gargantua"
 userArbitrary :: Text
 userArbitrary = "user1"
 
-
 nodeTypeId :: NodeType -> NodeTypeId
 nodeTypeId n =
   case n of
@@ -52,7 +51,8 @@ nodeTypeId n =
   --NodeSwap   -> 19
 
 ----  Lists
-    NodeList    -> 5
+    NodeList      -> 5
+    NodeListModel -> 10
 
 ----  Scores
 --    NodeOccurrences -> 10

src/Gargantext/Database/Node/Document/Insert.hs

@@ -81,7 +81,7 @@ import Gargantext.Prelude
 import qualified Data.ByteString.Lazy.Char8  as DC (pack)
 import qualified Data.Digest.Pure.SHA        as SHA (sha256, showDigest)
 import qualified Data.Text                   as DT (pack, unpack, concat, take)
-
+import Gargantext.Prelude.Utils (hash)
 -- TODO : the import of Document constructor below does not work
 -- import Gargantext.Database.Types.Node (Document)
 --import Gargantext.Database.Types.Node (docExample, hyperdataDocument, HyperdataDocument(..)
@@ -212,13 +212,10 @@ instance ToRow InputData where
 
 addUniqIdsDoc :: HyperdataDocument -> HyperdataDocument
 addUniqIdsDoc doc = set hyperdataDocument_uniqIdBdd (Just hashBdd)
-                  $ set hyperdataDocument_uniqId    (Just hash) doc
+                  $ set hyperdataDocument_uniqId    (Just hashUni) doc
   where
-    hash    = uniqId $ DT.concat $ map ($ doc) hashParametersDoc
-    hashBdd = uniqId $ DT.concat $ map ($ doc) ([(\d -> maybe' (_hyperdataDocument_bdd d))] <> hashParametersDoc)
-
-    uniqId :: Text -> Text
-    uniqId = DT.pack . SHA.showDigest . SHA.sha256 . DC.pack . DT.unpack
+    hashUni = hash $ DT.concat $ map ($ doc) hashParametersDoc
+    hashBdd = hash $ DT.concat $ map ($ doc) ([(\d -> maybe' (_hyperdataDocument_bdd d))] <> hashParametersDoc)
 
 
 hashParametersDoc :: [(HyperdataDocument -> Text)]
@@ -232,9 +229,9 @@ hashParametersDoc = [ \d -> maybe' (_hyperdataDocument_title    d)
 -- TODO factorize with above (use the function below for tests)
 addUniqIdsContact :: HyperdataContact -> HyperdataContact
 addUniqIdsContact hc = set (hc_uniqIdBdd) (Just hashBdd)
-                     $ set (hc_uniqId)    (Just hash)    hc
+                     $ set (hc_uniqId   ) (Just hashUni) hc
   where
-    hash    = uniqId $ DT.concat $ map ($ hc) hashParametersContact
+    hashUni = uniqId $ DT.concat $ map ($ hc) hashParametersContact
     hashBdd = uniqId $ DT.concat $ map ($ hc) ([\d -> maybe' (view hc_bdd d)] <> hashParametersContact)
 
     uniqId :: Text -> Text

src/Gargantext/Database/Schema/Node.hs

@@ -95,6 +95,10 @@ instance FromField HyperdataList
   where
     fromField = fromField'
 
+instance FromField HyperdataListModel
+  where
+    fromField = fromField'
+
 instance FromField HyperdataGraph
   where
     fromField = fromField'
@@ -131,6 +135,10 @@ instance QueryRunnerColumnDefault PGJsonb HyperdataList
   where
     queryRunnerColumnDefault = fieldQueryRunnerColumn
 
+instance QueryRunnerColumnDefault PGJsonb HyperdataListModel
+  where
+    queryRunnerColumnDefault = fieldQueryRunnerColumn
+
 instance QueryRunnerColumnDefault PGJsonb HyperdataGraph
   where
     queryRunnerColumnDefault = fieldQueryRunnerColumn
@@ -331,6 +339,9 @@ getDocumentsWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeDocument
 getListsWithParentId :: NodeId -> Cmd err [Node HyperdataList]
 getListsWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeList)
 
+getListsModelWithParentId :: NodeId -> Cmd err [Node HyperdataListModel]
+getListsModelWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeListModel)
+
 getCorporaWithParentId :: NodeId -> Cmd err [Node HyperdataCorpus]
 getCorporaWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeCorpus)
 
@@ -400,7 +411,6 @@ nodeAnnuaireW maybeName maybeAnnuaire pId = node NodeAnnuaire name annuaire (Jus
   where
     name     = maybe "Annuaire" identity maybeName
     annuaire = maybe defaultAnnuaire identity maybeAnnuaire
-                   --------------------------
 
 ------------------------------------------------------------------------
 arbitraryList :: HyperdataList
@@ -412,6 +422,20 @@ nodeListW maybeName maybeList pId = node NodeList name list (Just pId)
     name = maybe "Listes" identity maybeName
     list = maybe arbitraryList identity maybeList
 
+                --------------------
+
+arbitraryListModel :: HyperdataListModel
+arbitraryListModel = HyperdataListModel (400,500) "data/models/test.model" (Just 0.83)
+
+mkListModelNode :: HasNodeError err => ParentId -> UserId -> Cmd err [NodeId]
+mkListModelNode p u = insertNodesR [nodeListModelW Nothing Nothing p u]
+
+nodeListModelW :: Maybe Name -> Maybe HyperdataListModel -> ParentId -> UserId -> NodeWrite
+nodeListModelW maybeName maybeListModel pId = node NodeListModel name list (Just pId)
+  where
+    name = maybe "List Model" identity maybeName
+    list = maybe arbitraryListModel identity maybeListModel
+
 ------------------------------------------------------------------------
 arbitraryGraph :: HyperdataGraph
 arbitraryGraph = HyperdataGraph (Just "Preferences")
@@ -551,6 +575,7 @@ defaultList cId =
 mkList :: HasNodeError err => ParentId -> UserId -> Cmd err [NodeId]
 mkList p u = insertNodesR [nodeListW Nothing Nothing p u]
 
+
 mkGraph :: ParentId -> UserId -> Cmd err [GraphId]
 mkGraph p u = insertNodesR [nodeGraphW Nothing Nothing p u]
 

src/Gargantext/Database/Types/Node.hs

@@ -336,6 +336,19 @@ instance Hyperdata HyperdataList
 instance Arbitrary HyperdataList where
   arbitrary = elements [HyperdataList (Just "from list A")]
 
+                      ----
+data HyperdataListModel = HyperdataListModel { _hlm_params  :: !(Int, Int)
+                                             , _hlm_path    :: !Text
+                                             , _hlm_score   :: !(Maybe Double)
+                                   } deriving (Show, Generic)
+
+instance Hyperdata HyperdataListModel
+instance Arbitrary HyperdataListModel where
+  arbitrary = elements [HyperdataListModel (100,100) "models/example.model" Nothing]
+
+$(deriveJSON (unPrefix "_hlm_") ''HyperdataListModel)
+$(makeLenses ''HyperdataListModel)
+
 ------------------------------------------------------------------------
 data HyperdataScore = HyperdataScore { hyperdataScore_preferences   :: !(Maybe Text)
                                    } deriving (Show, Generic)
@@ -418,7 +431,7 @@ data NodeType = NodeUser
               | NodeGraph
               | NodeDashboard  | NodeChart
               -- | Classification
-              | NodeList
+              | NodeList | NodeListModel
               -- | Metrics
               deriving (Show, Read, Eq, Generic, Bounded, Enum)
 

src/Gargantext/Prelude/Utils.hs

+{-|
+Module      : Gargantext.Prelude.Utils
+Description : Useful Tools near Prelude of the project
+Copyright   : (c) CNRS, 2017-Present
+License     : AGPL + CECILL v3
+Maintainer  : team@gargantext.org
+Stability   : experimental
+Portability : POSIX
+
+-}
+
+{-# LANGUAGE     NoImplicitPrelude       #-}
+{-# LANGUAGE     OverloadedStrings       #-}
+
+module Gargantext.Prelude.Utils
+  where
+
+--import Gargantext.Config (dataPath)
+import Data.Text (Text)
+import GHC.IO (FilePath)
+import Gargantext.Prelude
+import System.Random (newStdGen)
+import System.Directory (createDirectoryIfMissing)
+import qualified Data.ByteString.Lazy.Char8  as Char
+import qualified Data.Digest.Pure.SHA        as SHA (sha256, showDigest)
+import qualified Data.Text                   as Text
+
+type FolderPath = FilePath
+type FileName   = FilePath
+
+-- | TODO Env Monad
+dataPath :: Text
+dataPath = "data"
+
+hash :: Text -> Text
+hash = Text.pack
+     .  SHA.showDigest
+     .  SHA.sha256
+     . Char.pack
+     . Text.unpack
+
+
+toPath :: Int -> Text -> (FolderPath,FileName)
+toPath n x = (Text.unpack $ Text.intercalate "/" [x1,x2], Text.unpack xs)
+  where
+    (x1,x') = Text.splitAt n x
+    (x2,xs) = Text.splitAt n x'
+
+class SaveFile a where
+  saveFile' :: FilePath -> a -> IO ()
+
+class ReadFile a where
+  readFile' :: FilePath -> IO a
+
+-- | Empreinte is a uniq sequence of Text to identify the Type
+-- we want to save
+type Empreinte = Text
+
+saveFile :: SaveFile a => a -> IO FilePath
+saveFile a = do
+  let n = 3
+  (fp,fn) <- (toPath n) . hash . Text.pack . show <$> newStdGen
+  let foldPath = (Text.unpack dataPath) <> "/" <> fp
+  let filePath = foldPath <> "/" <> fn
+  _ <- createDirectoryIfMissing True foldPath
+  _ <- saveFile' filePath a
+  pure filePath
+
+readFile :: ReadFile a => FilePath -> IO a
+readFile fp = readFile' ((Text.unpack dataPath) <> "/" <> fp)
+

src/Gargantext/Text/List/Learn.hs

@@ -11,6 +11,8 @@ CSV parser for Gargantext corpus files.
 
 -}
 
+{-# OPTIONS_GHC -fno-warn-orphans #-}
+
 {-# LANGUAGE NoImplicitPrelude #-}
 {-# LANGUAGE OverloadedStrings #-}
 
@@ -19,9 +21,9 @@ module Gargantext.Text.List.Learn
 
 import Data.Map (Map)
 import Data.Maybe (maybe)
-import GHC.IO (FilePath)
 import Gargantext.Core.Types.Main (ListType(..), listTypeId, fromListTypeId)
 import Gargantext.Prelude
+import Gargantext.Prelude.Utils
 import Gargantext.Text.Metrics.Count (occurrencesWith)
 import qualified Data.IntMap as IntMap
 import qualified Data.List   as List
@@ -56,12 +58,17 @@ predictList :: SVM.Model -> [Vec.Vector Double] -> IO [Maybe ListType]
 predictList m vs = map (fromListTypeId . round) <$> predict m vs
 
 ------------------------------------------------------------------------
-save :: SVM.Model -> FilePath -> IO ()
-save = SVM.saveModel
+data Model = ModelSVM { model :: SVM.Model }
 
-load :: FilePath -> IO SVM.Model
-load = SVM.loadModel
+instance SaveFile Model
+  where
+    saveFile' p (ModelSVM m) = SVM.saveModel m p
 
+instance ReadFile Model
+  where
+    readFile' fp = do
+      m <- SVM.loadModel fp
+      pure $ ModelSVM m
 ------------------------------------------------------------------------
 -- | TODO
 -- shuffle list
@@ -74,11 +81,13 @@ grid m = do
           -> Map ListType [Vec.Vector Double]
           -> IO (Double, (Double,Double))
     grid' x y ls = do
-      model <- trainList x y ls
+      model' <- trainList x y ls
+      fp <- saveFile (ModelSVM model')
+      printDebug "file" fp
       let (res, toGuess) = List.unzip $ List.concat 
                                       $ map (\(k,vs) -> zip (repeat k) vs)
                                       $ Map.toList ls
-      res' <- predictList model toGuess
+      res' <- predictList model' toGuess
       pure (score'' $ score' $ List.zip res res', (x,y))
 
     {-
@@ -94,9 +103,9 @@ grid m = do
       where
         total = fromIntegral $ foldl (+) 0 $ Map.elems m''
 
-  r <- List.take 10 <$> List.reverse
-                    <$> List.sortOn fst
-                    <$> mapM (\(x,y) -> grid' x y m)  [(x,y) | x <- [500..600], y <- [500..600]]
+  r <- List.take 10 . List.reverse
+                    . (List.sortOn fst)
+                   <$> mapM (\(x,y) -> grid' x y m)  [(x,y) | x <- [500..510], y <- [500..510]]
 
   printDebug "GRID SEARCH" r
   -- save best result