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david Chavalarias
clinicaltrials
Commits
086db2d8
Commit
086db2d8
authored
Jul 03, 2017
by
Romain Loth
Browse files
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WIP edgetypes: first quick working version (unoptimized)
parent
039ff7ad
Changes
5
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5 changed files
with
216 additions
and
112 deletions
+216
-112
Tinaweb.js
twmain/Tinaweb.js
+106
-59
enviroment.js
twmain/enviroment.js
+68
-28
main.js
twmain/main.js
+12
-3
methods.js
twmain/methods.js
+8
-6
sigmaUtils.js
twmain/sigmaUtils.js
+22
-16
No files found.
twmain/Tinaweb.js
View file @
086db2d8
This diff is collapsed.
Click to expand it.
twmain/enviroment.js
View file @
086db2d8
...
...
@@ -275,7 +275,9 @@ function changeType() {
// new state is the complement of the received state ~[X\Y]
var
t1Activetypes
=
[]
for
(
var
i
in
t0Activetypes
)
t1Activetypes
[
i
]
=
!
t0Activetypes
[
i
]
var
t1ActivetypesKey
=
t1Activetypes
.
map
(
Number
).
join
(
"|"
)
// apriori key
let
t1ActivetypesKey
=
t1Activetypes
.
map
(
Number
).
join
(
"|"
)
// "union realm" (where we'll search the real bipartite Relations)
var
bipartiteKey
=
"1|1"
...
...
@@ -288,7 +290,6 @@ function changeType() {
// so => we set here a fallback to "1|0"
if
(
t1ActivetypesKey
==
"0|0"
)
{
t1Activetypes
=
[
true
,
false
]
t1ActivetypesKey
=
"1|0"
// this case "0|0" => "1|0" won't have a unique edge realm to look at
// nodes of "1|0" will need their "1|0" neighbors
...
...
@@ -299,6 +300,12 @@ function changeType() {
// special case: "macro level opens bipartite possibilities"
if
(
!
level
)
t1Activetypes
=
[
true
,
true
];
// now that we have the future types, infer associated state representations
// let t1ActivetypesKey = t1Activetypes.map(Number).join("|")
let
t1Activereltypes
=
TW
.
instance
.
inferActivereltypes
(
t1Activetypes
)
console
.
log
(
"activetypes:"
,
t1ActivetypesKey
)
console
.
log
(
"activereltypes:"
,
t1Activereltypes
)
// list of present nodes: needed *before* clearing
// (but only needed if local and no selections)
...
...
@@ -324,12 +331,14 @@ function changeType() {
}
}
for
(
var
eid
in
TW
.
Edges
)
{
if
(
TW
.
Edges
[
eid
].
categ
==
t1ActivetypesKey
)
for
(
var
k
in
t1Activereltypes
)
{
let
reltype
=
t1Activereltypes
[
k
]
if
(
TW
.
Edges
[
eid
].
categ
==
reltype
)
add1Elem
(
eid
)
}
// NB ie we
don't
add sameside edges "1|0" or "0|1" when target
// activetypes is "1|1" (aka "both")
// NB ie we
**do**
add sameside edges "1|0" or "0|1" when target
// activetypes is "1|1" (aka "both")
, cf. inferActivereltypes
}
sourceNodes
=
sels
...
...
@@ -361,8 +370,8 @@ function changeType() {
// [ ChangeType: incremental selection ;]
// Dictionaries of: opposite-neighs of current source nodes
var
newnodeset
=
{}
var
newsels
=
{}
var
edgesToAdd
=
{}
for
(
var
i
in
sourceNodes
)
{
let
srcnid
=
sourceNodes
[
i
];
let
srctyp
=
TW
.
Nodes
[
srcnid
].
type
...
...
@@ -370,7 +379,17 @@ function changeType() {
if
(
!
mixedStart
)
{
// case where we have an single kind of Relations to consider
// ie the realm of the bipartite relations called "1|1"
neighs
=
TW
.
Relations
[
bipartiteKey
][
srcnid
]
for
(
var
k
in
t1Activereltypes
)
{
let
reltype
=
t1Activereltypes
[
k
]
if
(
TW
.
Relations
[
reltype
]
&&
TW
.
Relations
[
reltype
][
srcnid
])
neighs
=
neighs
.
concat
(
TW
.
Relations
[
reltype
][
srcnid
])
}
console
.
log
(
"=> neighs"
,
neighs
)
// neighs = TW.Relations[bipartiteKey][srcnid]
}
else
{
// case with a mixed starting point
...
...
@@ -394,10 +413,9 @@ function changeType() {
if
(
t1Activetypes
[
TW
.
catDict
[
tgttyp
]])
{
newsels
[
tgtnid
]
=
true
;
// since we're here we keep
the edges if needed
// since we're here we keep
in the new scope (nodeset) if local
if
(
!
present
.
level
)
{
edgesToAdd
[
`
${
srcnid
}
;
${
tgtnid
}
`
]
=
true
edgesToAdd
[
`
${
tgtnid
}
;
${
srcnid
}
`
]
=
true
newnodeset
[
tgtnid
]
=
true
}
}
}
...
...
@@ -419,8 +437,23 @@ function changeType() {
for
(
var
nid
in
newsels
)
{
add1Elem
(
nid
)
}
for
(
var
eid
in
edgesToAdd
)
{
add1Elem
(
eid
)
// new loop on current scope to add sels edges and intra-neighbors edges
for
(
var
srcnid
in
newnodeset
)
{
for
(
var
tgtnid
in
newnodeset
)
{
let
possEids
=
[
`
${
srcnid
}
;
${
tgtnid
}
`
,
`
${
tgtnid
}
;
${
srcnid
}
`
]
for
(
var
l
in
possEids
)
{
let
eid
=
possEids
[
l
]
if
(
TW
.
Edges
[
eid
])
{
let
e
=
TW
.
Edges
[
eid
]
for
(
var
k
in
t1Activereltypes
)
{
let
reltype
=
t1Activereltypes
[
k
]
if
(
e
.
categ
==
reltype
)
add1Elem
(
eid
)
}
}
}
}
}
}
...
...
@@ -430,6 +463,7 @@ function changeType() {
TW
.
pushState
({
activetypes
:
t1Activetypes
,
activereltypes
:
t1Activereltypes
,
sels
:
newselsArr
,
// rels: added by MS2 (highlighted opposite- and same-side neighbours)
// possible: add it in an early way here and request that MS2 doesn't change state
...
...
@@ -491,6 +525,7 @@ function changeLevel() {
var
activetypes
=
present
.
activetypes
;
var
activetypesKey
=
activetypes
.
map
(
Number
).
join
(
"|"
)
var
activereltypes
=
present
.
activereltypes
TW
.
partialGraph
.
graph
.
clear
();
...
...
@@ -502,22 +537,26 @@ function changeLevel() {
for
(
var
i
in
sels
)
{
s
=
sels
[
i
];
nodesToAdd
[
s
]
=
true
;
if
(
TW
.
Relations
[
activetypesKey
])
{
neigh
=
TW
.
Relations
[
activetypesKey
][
s
]
if
(
neigh
)
{
for
(
var
j
in
neigh
)
{
t
=
neigh
[
j
]
nodesToAdd
[
t
]
=
true
;
edgesToAdd
[
s
+
";"
+
t
]
=
true
;
edgesToAdd
[
t
+
";"
+
s
]
=
true
;
if
(
!
selsChecker
[
t
]
)
voisinage
[
t
]
=
true
;
}
for
(
var
k
in
activereltypes
)
{
let
activereltype
=
activereltypes
[
k
]
console
.
log
(
"level: considering reltype "
,
activereltype
)
if
(
TW
.
Relations
[
activereltype
])
{
neigh
=
TW
.
Relations
[
activereltype
][
s
]
if
(
neigh
)
{
for
(
var
j
in
neigh
)
{
t
=
neigh
[
j
]
nodesToAdd
[
t
]
=
true
;
edgesToAdd
[
s
+
";"
+
t
]
=
true
;
edgesToAdd
[
t
+
";"
+
s
]
=
true
;
if
(
!
selsChecker
[
t
]
)
voisinage
[
t
]
=
true
;
}
}
}
else
{
// case where no edges at all (ex: scholars have no common keywords)
console
.
log
(
"no edges between these nodes"
)
}
}
else
{
// case where no edges at all (ex: scholars have no common keywords)
console
.
log
(
"no edges between these nodes"
)
}
}
...
...
@@ -536,6 +575,7 @@ function changeLevel() {
if
(
voisinage
[
i
]
!=
voisinage
[
j
]
)
{
// console.log( "\t" + voisinage[i] + " vs " + voisinage[j] )
add1Elem
(
voisinage
[
i
]
+
";"
+
voisinage
[
j
]
)
add1Elem
(
voisinage
[
j
]
+
";"
+
voisinage
[
i
]
)
}
}
}
...
...
twmain/main.js
View file @
086db2d8
...
...
@@ -24,6 +24,7 @@ TW.gmenuInfos={}; // map [graphsource => { node0/1 categories
// a system state is the summary of tina situation
TW
.
initialSystemState
=
{
activetypes
:
[],
// <== filled from TW.categories
activereltypes
:
[],
// <== same for edges
level
:
true
,
selectionNids
:
[],
// <== current selection !!
selectionRels
:
[],
// <== current highlighted neighbors
...
...
@@ -366,6 +367,7 @@ function mainStartGraph(inFormat, inData, twInstance) {
// activetypes: the node categorie(s) that is (are) currently displayed
// ex: [true,false] = [nodes of type 0 shown ; nodes of type 1 not drawn]
var
initialActivetypes
=
TW
.
instance
.
initialActivetypes
(
TW
.
categories
)
var
initialActivereltypes
=
TW
.
instance
.
inferActivereltypes
(
initialActivetypes
)
// XML parsing from ParseCustom
var
dicts
=
start
.
makeDicts
(
TW
.
categories
);
// > parse json or gexf, dictfy
...
...
@@ -406,7 +408,7 @@ function mainStartGraph(inFormat, inData, twInstance) {
// preparing the data (TW.Nodes and TW.Edges filtered by initial type)
// POSS: avoid this step and use the filters at rendering time!
TW
.
graphData
=
{
nodes
:
[],
edges
:
[]}
TW
.
graphData
=
sigma_utils
.
FillGraph
(
initialActivetypes
,
TW
.
catDict
,
TW
.
Nodes
,
TW
.
Edges
,
TW
.
graphData
);
TW
.
graphData
=
sigma_utils
.
FillGraph
(
initialActivetypes
,
initialActivereltypes
,
TW
.
catDict
,
TW
.
Nodes
,
TW
.
Edges
,
TW
.
graphData
);
// // ----------- TEST stock parse gexf and use nodes to replace TW's ---------
...
...
@@ -496,7 +498,10 @@ function mainStartGraph(inFormat, inData, twInstance) {
// ==================================================================
// a new state
TW
.
pushState
({
'activetypes'
:
initialActivetypes
})
TW
.
pushState
({
'activetypes'
:
initialActivetypes
,
'activereltypes'
:
initialActivereltypes
})
// NB the list of nodes and edges from TW.graphData will be changed
// by changeLevel, changeType or subset sliders => no need to keep it
...
...
@@ -510,7 +515,11 @@ function mainStartGraph(inFormat, inData, twInstance) {
// renderer position depend on viewpoint/zoom (like ~ html absolute positions of the node in the div)
// now that we have a sigma instance, let's bind our click handlers to it
TW
.
instance
.
initSigmaListeners
(
TW
.
partialGraph
,
initialActivetypes
)
TW
.
instance
.
initSigmaListeners
(
TW
.
partialGraph
,
initialActivetypes
,
// to init node sliders and .class gui elements
initialActivereltypes
// to init edge sliders
)
// [ / Poblating the Sigma-Graph ]
...
...
twmain/methods.js
View file @
086db2d8
...
...
@@ -19,9 +19,10 @@ TW.pushState = function( args ) {
newState
.
id
++
// 2) we update it with provided args
if
(
!
isUndef
(
args
.
activetypes
))
newState
.
activetypes
=
args
.
activetypes
if
(
!
isUndef
(
args
.
level
))
newState
.
level
=
args
.
level
;
if
(
!
isUndef
(
args
.
sels
))
newState
.
selectionNids
=
args
.
sels
;
if
(
!
isUndef
(
args
.
activetypes
))
newState
.
activetypes
=
args
.
activetypes
if
(
!
isUndef
(
args
.
activereltypes
))
newState
.
activereltypes
=
args
.
activereltypes
if
(
!
isUndef
(
args
.
level
))
newState
.
level
=
args
.
level
;
if
(
!
isUndef
(
args
.
sels
))
newState
.
selectionNids
=
args
.
sels
;
// neighbors (of any type) and their edges in an .selectionRels[type] slot
if
(
!
isUndef
(
args
.
rels
))
newState
.
selectionRels
=
args
.
rels
;
...
...
@@ -72,9 +73,10 @@ TW.pushState = function( args ) {
NodeWeightFilter
(
"#slidercat0nodesweight"
,
TW
.
categories
[
0
]);
NodeWeightFilter
(
"#slidercat1nodesweight"
,
TW
.
categories
[
1
]);
// only truly bipartite edges => only one GUI slider
showDisabledSlider
(
"#slidercat0edgesweight"
)
EdgeWeightFilter
(
"#slidercat1edgesweight"
,
"1|1"
,
"weight"
);
// one slider for each intra-type reltype
EdgeWeightFilter
(
"#slidercat0edgesweight"
,
"1|0"
,
"weight"
);
EdgeWeightFilter
(
"#slidercat1edgesweight"
,
"0|1"
,
"weight"
);
// NB: no slider for truly bipartite edges => 2 GUI sliders but 3 edge types
}
}
...
...
twmain/sigmaUtils.js
View file @
086db2d8
...
...
@@ -3,19 +3,25 @@
var
SigmaUtils
=
function
()
{
// input = GEXFstring
this
.
FillGraph
=
function
(
initialActivetypes
,
catDict
,
nodes
,
edges
,
graph
)
{
this
.
FillGraph
=
function
(
initialActivetypes
,
initialActivereltypes
,
catDict
,
nodes
,
edges
,
graph
)
{
console
.
log
(
"Filling the graaaaph:"
)
console
.
log
(
"FillGraph catDict"
,
catDict
)
// console.log("FillGraph nodes",nodes)
// console.log("FillGraph edges",edges)
// retrocompatibility -------------------------------- 8< -------------
if
(
!
initialActivereltypes
.
length
)
{
initialActivereltypes
=
[
initialActivetypes
.
map
(
Number
).
join
(
"|"
)]
}
// ---------------------------------------------------- 8< -------------
let
i
=
0
for
(
var
nid
in
nodes
)
{
var
n
=
nodes
[
nid
];
// console.debug('tr >>> fgr node', n)
if
(
initialActivetypes
[
catDict
[
n
.
type
]]
||
TW
.
conf
.
debug
.
initialShowAll
)
{
if
(
initialActivetypes
[
catDict
[
n
.
type
]])
{
// var node = {
// id : n.id,
// label : n.label,
...
...
@@ -43,20 +49,20 @@ var SigmaUtils = function () {
}
}
// the typestring of the activetypes is the key to stored Relations (<=> edges)
var
activetypesKey
=
initialActivetypes
.
map
(
Number
).
join
(
"|"
)
for
(
let
srcnid
in
TW
.
Relations
[
activetypesKey
])
{
for
(
var
j
in
TW
.
Relations
[
activetypesKey
][
srcnid
])
{
let
tgtnid
=
TW
.
Relations
[
activetypesKey
][
srcnid
][
j
]
let
e
=
TW
.
Edges
[
srcnid
+
";"
+
tgtnid
]
if
(
e
)
{
if
(
e
.
source
!=
e
.
target
)
{
graph
.
edges
.
push
(
e
);
}
}
}
// the typestrings in activereltypes are the key to stored Relations (<=> edges)
for
(
var
k
in
initialActivereltypes
)
{
let
reltype
=
initialActivereltypes
[
k
]
for
(
let
srcnid
in
TW
.
Relations
[
reltype
])
{
for
(
var
j
in
TW
.
Relations
[
reltype
][
srcnid
])
{
let
tgtnid
=
TW
.
Relations
[
reltype
][
srcnid
][
j
]
let
e
=
TW
.
Edges
[
srcnid
+
";"
+
tgtnid
]
if
(
e
)
{
if
(
e
.
source
!=
e
.
target
)
{
graph
.
edges
.
push
(
e
);
}
}
}
}
}
return
graph
;
}
// output = sigma graph
...
...
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