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david Chavalarias
clinicaltrials
Commits
6a4e0439
Commit
6a4e0439
authored
Jun 28, 2017
by
Romain Loth
Browse files
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first deployment of ProjectExplorer for comex using new method
parent
7c0749cf
Changes
10
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10 changed files
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58 additions
and
34 deletions
+58
-34
README.md
00.DOCUMENTATION/A-Introduction/README.md
+15
-0
explorerjs.html
explorerjs.html
+1
-1
settings_explorerjs.js
settings_explorerjs.js
+17
-25
selection-panels.css
twlibs/css/selection-panels.css
+5
-0
twjs.css
twlibs/css/twjs.css
+1
-0
Tinaweb.js
twmain/Tinaweb.js
+9
-0
enviroment.js
twmain/enviroment.js
+1
-1
methods.js
twmain/methods.js
+3
-3
settings_explorerjs.comex.js
twpresets/settings_explorerjs.comex.js
+5
-3
adapt_html_paths.sh
twtools/adapt_html_paths.sh
+1
-1
No files found.
00.DOCUMENTATION/A-Introduction/README.md
View file @
6a4e0439
...
@@ -46,7 +46,22 @@ There are two exceptions are:
...
@@ -46,7 +46,22 @@ There are two exceptions are:
# - explorerjs.html -> static/ProjectExplorer/explorerjs.prod.html
# - explorerjs.html -> static/ProjectExplorer/explorerjs.prod.html
```
```
4) finally update the settings property `ourlibs` (path to twlibs) with the same URL prefix
```
nano static/ProjectExplorer/settings_explorerjs.js
----------------- [IN NANO] --------------------
(...)
TWConf.paths = {
'ourlibs': 'static/ProjectExplorer/twlibs', // <=== here
...
}
(...)
-----------------------------------------------
```
- to use it within a different GUI layout: take our html as an exemple and create your own html importing the same libs and exposing the same div ids.
- to use it within a different GUI layout: take our html as an exemple and create your own html importing the same libs and exposing the same div ids.
- the directory `twpresets/` contains specific variants of `settings_explorerjs` for some common deployment tasks of the ISCPIF (comex, gargantext)
-
optionally, the backends under
`twbackends`
:
-
optionally, the backends under
`twbackends`
:
-
they are the only server-side elements of the tina distribution
-
they are the only server-side elements of the tina distribution
...
...
explorerjs.html
View file @
6a4e0439
...
@@ -444,7 +444,7 @@
...
@@ -444,7 +444,7 @@
</div>
</div>
</div>
</div>
<div
class=
"question"
>
<div
class=
"question
reldocs
"
>
<div
class=
"input-group"
>
<div
class=
"input-group"
>
<label
for=
"reldocs-type"
class=
"smlabel input-group-addon"
>
Related documents type
</label>
<label
for=
"reldocs-type"
class=
"smlabel input-group-addon"
>
Related documents type
</label>
<select
id=
"reldocs-type"
name=
"reldocs-type"
<select
id=
"reldocs-type"
name=
"reldocs-type"
...
...
settings_explorerjs.js
View file @
6a4e0439
...
@@ -6,8 +6,8 @@ TW.conf = (function(TW){
...
@@ -6,8 +6,8 @@ TW.conf = (function(TW){
let
TWConf
=
{}
let
TWConf
=
{}
TWConf
.
branding
=
'
ProjectExplorer'
// <--- the
name displayed in upper left
TWConf
.
branding
=
'
Community Explorer 2'
// <---
name displayed in upper left
TWConf
.
brandingLink
=
'https://
github.com/moma/ProjectExplorer
'
// <--- link to "home"
TWConf
.
brandingLink
=
'https://
communityexplorer.org
'
// <--- link to "home"
// ==========================
// ==========================
...
@@ -17,10 +17,10 @@ TW.conf = (function(TW){
...
@@ -17,10 +17,10 @@ TW.conf = (function(TW){
// Graph data source
// Graph data source
// -----------------
// -----------------
// the graph input depends on TWConf.sourcemode (or manual url arg 'sourcemode')
// the graph input depends on TWConf.sourcemode (or manual url arg 'sourcemode')
TWConf
.
sourcemode
=
"
servermenu
"
// accepted: "api" | "serverfile" | "servermenu" | "localfile"
TWConf
.
sourcemode
=
"
api
"
// accepted: "api" | "serverfile" | "servermenu" | "localfile"
// server-side .gexf|.json default source
// server-side .gexf|.json default source
TWConf
.
sourceFile
=
"
data/politoscope/ProgrammeDesCandidats.enrichi.gexf
"
TWConf
.
sourceFile
=
""
// ...or server-side gexf default source list
// ...or server-side gexf default source list
TWConf
.
sourceMenu
=
"db.json"
TWConf
.
sourceMenu
=
"db.json"
...
@@ -34,21 +34,13 @@ TW.conf = (function(TW){
...
@@ -34,21 +34,13 @@ TW.conf = (function(TW){
// Related documents (topPapers) data source
// Related documents (topPapers) data source
// -----------------------------------------
// -----------------------------------------
TWConf
.
getRelatedDocs
=
tru
e
TWConf
.
getRelatedDocs
=
fals
e
TWConf
.
relatedDocsMax
=
10
TWConf
.
relatedDocsMax
=
10
TWConf
.
relatedDocsAPI
=
"http://127.0.0.1:5000/twitter_search"
TWConf
.
relatedDocsType
=
"
wosLocalDB"
// accepted: "twitter" | "wosLocalDB"
TWConf
.
relatedDocsType
=
"
twitter"
// accepted: "twitter" | "wosLocalDB"
// POSSible: "elastic"
// POSSible: "elastic"
TWConf
.
relatedDocsAPIS
=
{
// routes by corresponding type
"wosLocalDB"
:
"twbackends/phpAPI"
,
"twitter"
:
"http://127.0.0.1:5000/twitter_search"
}
// fallback topPapers API if none found by type
TWConf
.
relatedDocsAPI
=
"LOCALDB"
// =======================
// =======================
// DATA FACETS AND LEGENDS
// DATA FACETS AND LEGENDS
// =======================
// =======================
...
@@ -114,8 +106,8 @@ TW.conf = (function(TW){
...
@@ -114,8 +106,8 @@ TW.conf = (function(TW){
'weight'
:
{
'col'
:
"heatmap"
,
'n'
:
5
,
'binmode'
:
'samerange'
},
'weight'
:
{
'col'
:
"heatmap"
,
'n'
:
5
,
'binmode'
:
'samerange'
},
'Weighted Degree'
:
{
'col'
:
"heatmap"
,
'n'
:
8
,
'binmode'
:
'samerange'
},
'Weighted Degree'
:
{
'col'
:
"heatmap"
,
'n'
:
8
,
'binmode'
:
'samerange'
},
'out-degree'
:
{
'col'
:
"heatmap"
,
'n'
:
3
,
'binmode'
:
'samepop'
},
'out-degree'
:
{
'col'
:
"heatmap"
,
'n'
:
3
,
'binmode'
:
'samepop'
},
'
countryuniform'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'
CC'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'
countrypareto'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'
ACR'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'cluster_universal_index'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'cluster_universal_index'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
},
'community_orphan'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
}
'community_orphan'
:
{
'col'
:
"cluster"
,
'binmode'
:
'off'
}
...
@@ -135,7 +127,7 @@ TW.conf = (function(TW){
...
@@ -135,7 +127,7 @@ TW.conf = (function(TW){
// when coloring method is "cluster", should the colors change each time ?
// when coloring method is "cluster", should the colors change each time ?
TWConf
.
randomizeClusterColors
=
fals
e
TWConf
.
randomizeClusterColors
=
tru
e
// default clustering attribute (<---> used for initial node colors)
// default clustering attribute (<---> used for initial node colors)
TWConf
.
nodeClusAtt
=
"modularity_class"
TWConf
.
nodeClusAtt
=
"modularity_class"
...
@@ -155,14 +147,15 @@ TW.conf = (function(TW){
...
@@ -155,14 +147,15 @@ TW.conf = (function(TW){
// =============
// =============
// Node typology: categories (resp. 0 and 1) will get these default labels
// Node typology: categories (resp. 0 and 1) will get these default labels
TWConf
.
catSem
=
"
term
"
;
TWConf
.
catSem
=
"
Terms
"
;
TWConf
.
catSoc
=
"
person
"
;
TWConf
.
catSoc
=
"
Document
"
;
// NB: these labels may be superseded by the input data's node types values
// NB: these labels may be superseded by the input data's node types values
// cf. sortNodeTypes()
// cf. sortNodeTypes()
// Modules path
// Modules path
// ------------
// ------------
TWConf
.
paths
=
{
TWConf
.
paths
=
{
'ourlibs'
:
'static/tinawebJS/twlibs'
,
'modules'
:
'twmodules'
'modules'
:
'twmodules'
}
}
Object
.
freeze
(
TWConf
.
paths
)
// /!\ to prevent path modification before load
Object
.
freeze
(
TWConf
.
paths
)
// /!\ to prevent path modification before load
...
@@ -202,7 +195,6 @@ TW.conf = (function(TW){
...
@@ -202,7 +195,6 @@ TW.conf = (function(TW){
// TW.geomap = false;
// TW.geomap = false;
// TW.twittertimeline = false;
// TW.twittertimeline = false;
TWConf
.
maxPastStates
=
5
;
// number of TW.states to remember (~CTRL-Z)
TWConf
.
maxPastStates
=
5
;
// number of TW.states to remember (~CTRL-Z)
...
@@ -213,8 +205,8 @@ TW.conf = (function(TW){
...
@@ -213,8 +205,8 @@ TW.conf = (function(TW){
// if fa2Available, the auto-run config:
// if fa2Available, the auto-run config:
TWConf
.
fa2Enabled
=
fals
e
;
// fa2 auto-run at start and after graph modified ?
TWConf
.
fa2Enabled
=
tru
e
;
// fa2 auto-run at start and after graph modified ?
TWConf
.
fa2Milliseconds
=
5
000
;
// duration of auto-run
TWConf
.
fa2Milliseconds
=
10
000
;
// duration of auto-run
TWConf
.
minNodesForAutoFA2
=
5
// graph size threshold to auto-run
TWConf
.
minNodesForAutoFA2
=
5
// graph size threshold to auto-run
...
@@ -293,7 +285,7 @@ TW.conf = (function(TW){
...
@@ -293,7 +285,7 @@ TW.conf = (function(TW){
// em size range for neighbor nodes "tagcloud" (1 = "normal size")
// em size range for neighbor nodes "tagcloud" (1 = "normal size")
TWConf
.
tagcloudFontsizeMin
=
.
8
;
TWConf
.
tagcloudFontsizeMin
=
.
8
;
TWConf
.
tagcloudFontsizeMax
=
2
;
TWConf
.
tagcloudFontsizeMax
=
1.5
;
TWConf
.
tagcloudSameLimit
=
50
// max displayed neighbors of the same type
TWConf
.
tagcloudSameLimit
=
50
// max displayed neighbors of the same type
TWConf
.
tagcloudOpposLimit
=
10
// max displayed neighbors of the opposite type
TWConf
.
tagcloudOpposLimit
=
10
// max displayed neighbors of the opposite type
...
@@ -311,7 +303,7 @@ TW.conf = (function(TW){
...
@@ -311,7 +303,7 @@ TW.conf = (function(TW){
initialShowAll
:
false
,
// show all nodes on bipartite case init (docs + terms in one view)
initialShowAll
:
false
,
// show all nodes on bipartite case init (docs + terms in one view)
// show verbose console logs...
// show verbose console logs...
logFetchers
:
false
,
// ...about ajax/fetching of graph data
logFetchers
:
false
,
// ...about ajax/fetching of graph data
logParsers
:
false
,
// ...about parsing said data
logParsers
:
false
,
// ...about parsing said data
logFacets
:
false
,
// ...about parsing node attribute:value facets
logFacets
:
false
,
// ...about parsing node attribute:value facets
logSettings
:
false
,
// ...about settings at Tina and Sigma init time
logSettings
:
false
,
// ...about settings at Tina and Sigma init time
...
...
twlibs/css/selection-panels.css
View file @
6a4e0439
...
@@ -150,6 +150,11 @@
...
@@ -150,6 +150,11 @@
/* ----------- */
/* ----------- */
.reldocs
{
display
:
none
;
}
#sidefold
{
#sidefold
{
position
:
absolute
;
position
:
absolute
;
left
:
0
;
left
:
0
;
...
...
twlibs/css/twjs.css
View file @
6a4e0439
...
@@ -277,6 +277,7 @@ p.micromessage{
...
@@ -277,6 +277,7 @@ p.micromessage{
#information
.information-vcard
{
#information
.information-vcard
{
border
:
2px
solid
#555
;
border
:
2px
solid
#555
;
padding
:
2em
1em
.3em
1em
;
padding
:
2em
1em
.3em
1em
;
margin
:
1em
;
background-color
:
#fff
;
background-color
:
#fff
;
border-radius
:
.3em
;
border-radius
:
.3em
;
}
}
...
...
twmain/Tinaweb.js
View file @
6a4e0439
...
@@ -1062,6 +1062,15 @@ var TinaWebJS = function ( sigmacanvas ) {
...
@@ -1062,6 +1062,15 @@ var TinaWebJS = function ( sigmacanvas ) {
}
}
});
});
if
(
TW
.
conf
.
getRelatedDocs
)
{
let
reldocsEls
=
document
.
querySelectorAll
(
'.reldocs'
)
for
(
var
k
in
reldocsEls
)
{
if
(
reldocsEls
[
k
].
style
)
{
reldocsEls
[
k
].
style
.
display
=
'block'
}
}
}
if
(
TW
.
conf
.
filterSliders
)
{
if
(
TW
.
conf
.
filterSliders
)
{
// the indice of the first cat to be active (ex: '1')
// the indice of the first cat to be active (ex: '1')
...
...
twmain/enviroment.js
View file @
6a4e0439
...
@@ -1000,7 +1000,7 @@ function updateSearchLabels(id,name,type){
...
@@ -1000,7 +1000,7 @@ function updateSearchLabels(id,name,type){
function
createWaitIcon
(
idname
,
width
)
{
function
createWaitIcon
(
idname
,
width
)
{
let
icon
=
document
.
createElement
(
'img'
)
let
icon
=
document
.
createElement
(
'img'
)
icon
.
src
=
'twlibs
/img/loader.gif'
icon
.
src
=
TW
.
conf
.
path
.
ourlibs
+
'
/img/loader.gif'
icon
.
style
.
position
=
'absolute'
icon
.
style
.
position
=
'absolute'
icon
.
style
.
left
=
'0'
icon
.
style
.
left
=
'0'
...
...
twmain/methods.js
View file @
6a4e0439
...
@@ -339,9 +339,9 @@ function htmlfied_nodesatts(elems){
...
@@ -339,9 +339,9 @@ function htmlfied_nodesatts(elems){
if
(
swActual
(
node
.
type
)
==
'semantic'
){
if
(
swActual
(
node
.
type
)
==
'semantic'
){
information
+=
'<li><b>'
+
node
.
label
+
'</b></li>'
;
information
+=
'<li><b>'
+
node
.
label
+
'</b></li>'
;
let
google
=
'<a href=http://www.google.com/#hl=en&source=hp&q=%20'
+
node
.
label
.
replace
(
" "
,
"+"
)
+
'%20><img src="
twlibs
/img/google.png"></img></a>'
;
let
google
=
'<a href=http://www.google.com/#hl=en&source=hp&q=%20'
+
node
.
label
.
replace
(
" "
,
"+"
)
+
'%20><img src="
'
+
TW
.
conf
.
paths
.
ourlibs
+
'
/img/google.png"></img></a>'
;
let
wiki
=
'<a href=http://en.wikipedia.org/wiki/'
+
node
.
label
.
replace
(
" "
,
"_"
)
+
'><img src="
twlibs
/img/wikipedia.png"></img></a>'
;
let
wiki
=
'<a href=http://en.wikipedia.org/wiki/'
+
node
.
label
.
replace
(
" "
,
"_"
)
+
'><img src="
'
+
TW
.
conf
.
paths
.
ourlibs
+
'
/img/wikipedia.png"></img></a>'
;
let
flickr
=
'<a href=http://www.flickr.com/search/?w=all&q='
+
node
.
label
.
replace
(
" "
,
"+"
)
+
'><img src="
twlibs
/img/flickr.png"></img></a>'
;
let
flickr
=
'<a href=http://www.flickr.com/search/?w=all&q='
+
node
.
label
.
replace
(
" "
,
"+"
)
+
'><img src="
'
+
TW
.
conf
.
paths
.
ourlibs
+
'
/img/flickr.png"></img></a>'
;
information
+=
'<li>'
+
google
+
" "
+
wiki
+
" "
+
flickr
+
'</li><br>'
;
information
+=
'<li>'
+
google
+
" "
+
wiki
+
" "
+
flickr
+
'</li><br>'
;
semnodes
.
push
(
information
)
semnodes
.
push
(
information
)
}
}
...
...
twpresets/settings_explorerjs.comex.js
View file @
6a4e0439
...
@@ -171,9 +171,11 @@ TW.conf = (function(TW){
...
@@ -171,9 +171,11 @@ TW.conf = (function(TW){
TWConf
.
ModulesFlags
[
"crowdsourcingModule"
]
=
true
;
TWConf
.
ModulesFlags
[
"crowdsourcingModule"
]
=
true
;
// Other optional functionalities
// Other GUI options
// -----------------------------
// ------------------
TWConf
.
filterSliders
=
true
// show sliders for nodes/edges subsets
TWConf
.
sidePanelSize
=
"300px"
// width of the side panel (def: 400px)
TWConf
.
filterSliders
=
true
// show sliders for nodes/edges subsets
TWConf
.
clusterColorsAtt
=
true
;
// show "Set colors" menu
TWConf
.
clusterColorsAtt
=
true
;
// show "Set colors" menu
...
...
twtools/adapt_html_paths.sh
View file @
6a4e0439
...
@@ -26,7 +26,7 @@ fi
...
@@ -26,7 +26,7 @@ fi
if
[
-e
explorerjs.html
]
if
[
-e
explorerjs.html
]
then
then
perl
-pse
's/ ((?:href|src)=[\x22\x27]?)(twlibs3?|twmain)/ $1$pathprefix$2/g'
--
-pathprefix
=
$newpathprefix
< explorerjs.html
>
explorerjs.prod.html
perl
-pse
's/ ((?:href|src)=[\x22\x27]?)(twlibs3?|twmain
|settings_explorerjs
)/ $1$pathprefix$2/g'
--
-pathprefix
=
$newpathprefix
< explorerjs.html
>
explorerjs.prod.html
echo
'created: explorerjs.prod.html'
echo
'created: explorerjs.prod.html'
exit
0
exit
0
else
else
...
...
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