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clinicaltrials
Commit 7fa9d71a authored by Romain Loth's avatar Romain Loth
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json output mode for php (2/2: for the legacy sql queries)

parent 90ad614a
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Showing with 62 additions and 158 deletions
twbackends/phpAPI/csv_div.php
View file @ 7fa9d71a
...@@ -47,7 +47,8 @@ function displayDoc($docId, $score, $base, $outmode) { ...@@ -47,7 +47,8 @@ function displayDoc($docId, $score, $base, $outmode) {
"src" => $source, "src" => $source,
"kws" => $keywords, "kws" => $keywords,
"txt" => $doccontent, "txt" => $doccontent,
"date" => $date "date" => $date,
"score" => $score
); );
} }
return $output; return $output;
......
twbackends/phpAPI/default_div.php
View file @ 7fa9d71a
...@@ -80,7 +80,8 @@ $count=0; ...@@ -80,7 +80,8 @@ $count=0;
$all_terms_from_selected_projects=array();// list of terms for the top 6 project selected $all_terms_from_selected_projects=array();// list of terms for the top 6 project selected
$output = ""; $htmlout = "";
$jsonhits = array();
// to filter under some conditions // to filter under some conditions
$to_display=true; $to_display=true;
...@@ -98,18 +99,42 @@ foreach ($wos_ids as $id => $score) { ...@@ -98,18 +99,42 @@ foreach ($wos_ids as $id => $score) {
foreach ($base->query($sql) as $row) { foreach ($base->query($sql) as $row) {
$external_link="<a href=http://google.com/webhp?#q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=15px src="'.$our_libs_root.'/img/google.png"></a>'; $external_link="<a href=http://google.com/webhp?#q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=15px src="'.$our_libs_root.'/img/google.png"></a>';
$output.="<li title='".$score."'>";
$output.=$external_link.imagestar($score,$factor,$our_libs_root).' '; $link = 'JavaScript:newPopup(\''.$our_php_root.'/default_doc_details.php?gexf='.urlencode($gexf).'&index='.$table.'&query='.urlencode($query).'&type='.urlencode($_GET['type']).'&id='.$id.' \')';
$output.='<a href="JavaScript:newPopup(\''.$our_php_root.'/default_doc_details.php?gexf='.urlencode($gexf).'&index='.$table.'&query='.urlencode($query).'&type='.urlencode($_GET["type"]).'&id='.$id.' \')">'.$row['data']." </a> ";
} if ($output_mode == "html") {
$htmlout.="<li title='".$score."'>";
$htmlout.=$external_link.imagestar($score,$factor,$our_libs_root).' ';
$htmlout.="<a href=\"$link\">".$row['data']." </a> ";
}
else {
$jsonhit = array(
'score' => $score,
'tit' => $row['data'],
'link' => $link
);
}
}
// get the authors // get the authors
$sql = 'SELECT data FROM '.$author_table.' WHERE id='.$id; $sql = 'SELECT data FROM '.$author_table.' WHERE id='.$id;
foreach ($base->query($sql) as $row) { foreach ($base->query($sql) as $row) {
$output.=($row['data']).', '; if ($output_mode == "html") {
$htmlout.=($row['data']).', ';
}
else {
$jsonhit['au'] = $row['data'];
}
} }
$output = rtrim($output, ", ");
$output.="</li><br>";
if ($output_mode == "html") {
$htmlout = rtrim($htmlout, ", ");
$htmlout.="</li><br>";
}
else {
array_push($jsonhits, $jsonhit);
}
} }
} }
...@@ -119,135 +144,8 @@ foreach ($wos_ids as $id => $score) { ...@@ -119,135 +144,8 @@ foreach ($wos_ids as $id => $score) {
} }
} }
$output .= "</ul>"; ##### $htmlout .= "</ul>"; #####
// // if (($project_folder=='nci')&&(count($elems)<$max_selection_size)){
// // // for NCI we compare the impact and novelty score making the difference if there are more than 4 terms selected
// // $news='';//new terms
// // $terms_from_selected_projects=array_unique($all_terms_from_selected_projects);
// // if(count($terms_from_selected_projects)>3){
// // $diff=array();
// // foreach ($terms_from_selected_projects as $key => $term) {
// // $sql= "select count(*),ISIterms.id, ISIterms.data from ISIterms join ISIpubdate on (ISIterms.id=ISIpubdate.id AND ISIpubdate.data=2011 AND ISIterms.data='".$term."') group by ISIterms.data";
// // $nov=0;
// // foreach ($corporadb->query($sql) as $row) {
// // $nov=$row['count(*)'];
// // }
// // $sql= "select count(*),ISIterms.id, ISIterms.data from ISIterms join ISIpubdate on (ISIterms.id=ISIpubdate.id AND ISIpubdate.data=2012 AND ISIterms.data='".$term."') group by ISIterms.data";
// // $imp=0;
// // foreach ($corporadb->query($sql) as $row) {
// // $imp=$row['count(*)'];
// // }
// // $diff[$term]=info($nov,$imp); //positive si c'est un term novelty, negatif si c'est un terme impact.
// // //echo $term.'-nov: '.$nov.'- imp:'.$imp.'<br/>';//'-info'.$diff[$term].
// // }
// // if (true){
// // arsort($diff);
// // $res=array_keys($diff);
// // //echo implode(', ', $res);
// // $nov_string='';
// // for ($i=0;$i<$top_displayed;$i++){
// // // on récupère les titres du document qui a le plus for impact
// // $sql="SELECT ISIterms.id,ISIC1_1.data,count(*) from ISIterms,ISIpubdate,ISIC1_1 where ISIterms.data='".$res[$i]."' AND ISIterms.id=ISIpubdate.id AND ISIterms.id=ISIC1_1.id AND ISIpubdate.data='2011' group by ISIterms.id ORDER BY RANDOM() limit 1";
// // //on récupère les id associés.
// // foreach ($corporadb->query($sql) as $row){
// // $sql2='SELECT ISIpubdate.id,ISIC1_1.data from ISIpubdate,ISIC1_1 where ISIC1_1.data="'.$row['data'].'" AND ISIpubdate.id=ISIC1_1.id AND ISIpubdate.data="2013" limit 1';
// // //echo $sql2;
// // foreach ($corporadb->query($sql2) as $row2){
// // $nov_string.='<a href="JavaScript:newPopup(\''.$our_php_root.'/default_doc_details.php?db='.urlencode($graphdb).'&gexf='.urlencode($gexf).'&query='.urlencode('["'.$res[$i].'"]').'&type='.urlencode($_GET["type"]).'&id='.$row2['id'].' \')">'.$res[$i]."</a>, ";
// // }
// // }
// // }
// // $news.='<br/><b><font color="#FF0066">Top '.$top_displayed.' Novelty related terms </font></b>'.$nov_string.'<br/>';
// // asort($diff);
// // $res=array_keys($diff);
// // $res_string='';
// // for ($i=0;$i<$top_displayed;$i++){
// // // on récupère les titres du document qui a le plus for impact
// // $sql="SELECT ISIterms.id,ISIC1_1.data,count(*) from ISIterms,ISIpubdate,ISIC1_1 where ISIterms.data='".$res[$i]."' AND ISIterms.id=ISIpubdate.id AND ISIterms.id=ISIC1_1.id AND ISIpubdate.data='2012' group by ISIterms.id ORDER BY RANDOM()limit 1";
// // //on récupère les id associés.
// // foreach ($corporadb->query($sql) as $row){
// // $sql2='SELECT ISIpubdate.id,ISIC1_1.data from ISIpubdate,ISIC1_1 where ISIC1_1.data="'.$row['data'].'" AND ISIpubdate.id=ISIC1_1.id AND ISIpubdate.data="2013" limit 1';
// // //echo $sql2;
// // foreach ($corporadb->query($sql2) as $row2){
// // $res_string.='<a href="JavaScript:newPopup(\''.$our_php_root.'/default_doc_details.php?db='.urlencode($graphdb).'&gexf='.urlencode($gexf).'&query='.urlencode('["'.$res[$i].'"]').'&type='.urlencode($_GET["type"]).'&id='.$row2['id'].' \')">'.$res[$i]."</a>, ";
// // }
// // }
// // }
// // $news.='<br/><b><font color="#CF5300">Top '.$top_displayed.' Impact related terms: </font></b>'.$res_string.'<br/>';
// // }
// // }
// // }
// // display the most occuring terms when only one is selected.
// //elseif (count($elems)==1) {// on affiche les voisins
// // $terms_array=array();
// // $id_sql='SELECT ISIterms.id FROM ISIterms where ISIterms.data="'.$elems[0].'" group by id';
// // foreach ($base->query($id_sql) as $row_id) {
// // $sql2='SELECT ISIterms.data FROM ISIterms where ISIterms.id='.$row_id['id'];
// // foreach ($base->query($sql2) as $row_terms) {
// // if ($terms_array[$row_terms['data']]>0){
// // $terms_array[$row_terms['data']]=$terms_array[$row_terms['data']]+1;
// // }else{
// // $terms_array[$row_terms['data']]=1;
// // }
// // }
// // }
// // natsort($terms_array);
// // $terms_list=array_keys(array_slice($terms_array,-11,-1));
// // foreach ($terms_list as $first_term) {
// // $related_terms.=$first_term.', ';
// // }
// // $news.='<br/><b><font color="#CF5300">Related terms: </font></b>'.$related_terms.'<br/>';
// //}
// calculate binomial coefficient // calculate binomial coefficient
function binomial_coeff($n, $k) { function binomial_coeff($n, $k) {
...@@ -268,8 +166,19 @@ $output .= "</ul>"; ##### ...@@ -268,8 +166,19 @@ $output .= "</ul>"; #####
} }
if($max_item_displayed>$total_count) $max_item_displayed=$total_count;
// echo $news.'<br/><h4><font color="#0000FF"> Full text of top '.$max_item_displayed.'/'.$related.' related publications:</font></h4>'.$output; if ($output_mode == 'html') {
echo '<br/><h4><font color="#0000FF"> Full text of top '.$max_item_displayed.'/'.$total_count.' related publications:</font></h4>'.$output; if($max_item_displayed>$total_count) $max_item_displayed=$total_count;
// echo $news;
echo '<h4><font color="#0000FF"> Full text of top '.$max_item_displayed.'/'.$total_count.' related publications:</font></h4>';
echo $htmlout;
}
else {
echo json_encode(array(
'hits' => $jsonhits,
'nhits' => $max_item_displayed
));
}
//pt - 301 ; 15.30 //pt - 301 ; 15.30
?> ?>
twbackends/phpAPI/default_doc_details.php
View file @ 7fa9d71a
<?php <?php
include('tools.php'); include('tools.php');
include('parameters_details.php'); include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" .$db); $base = new PDO("sqlite:" .$mainpath.$graphdb);
$query = str_replace( '__and__', '&', $_GET["query"] ); $query = str_replace( '__and__', '&', $_GET["query"] );
$terms_of_query = json_decode($query); $terms_of_query = json_decode($query);
// echo "mainpath: ".$mainpath."<br>"; // echo "mainpath: ".$mainpath."<br>";
// echo "thedb: ".$db."<br>"; // echo "thedb: ".$mainpath.$graphdb."<br>";
// echo "thequery: ".var_dump($terms_of_query); // echo "thequery: ".var_dump($terms_of_query);
echo ' echo '
......
twbackends/phpAPI/full_doc_list.php
View file @ 7fa9d71a
<?php <?php
include('tools.php'); include('tools.php');
include('parameters_details.php'); include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" .$db); $base = new PDO("sqlite:" .$mainpath.$graphdb);
$output = "<ul>"; // string sent to the javascript for display $output = "<ul>"; // string sent to the javascript for display
...@@ -76,7 +75,7 @@ foreach ($base->query($sql) as $row) { ...@@ -76,7 +75,7 @@ foreach ($base->query($sql) as $row) {
$number_doc=ceil(count($wos_ids)/3); $number_doc=ceil(count($wos_ids)/3);
$count=0; $count=0;
foreach ($wos_ids as $id => $score) { foreach ($wos_ids as $id => $score) {
if ($count<1000){ if ($count<200){
// retrieve publication year // retrieve publication year
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id; $sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) { foreach ($base->query($sql) as $row) {
...@@ -88,12 +87,12 @@ foreach ($wos_ids as $id => $score) { ...@@ -88,12 +87,12 @@ foreach ($wos_ids as $id => $score) {
if ($to_display){ if ($to_display){
$count+=1; $count+=1;
$output.="<li title='".$score."'>"; $output.="<li title='".$score."'>";
$output.=imagestar($score,$factor,$our_libs_root).' '; $output.=imagestar($score,$factor,'./').' ';
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id." group by data"; $sql = 'SELECT data FROM ISITITLE WHERE id='.$id." group by data";
foreach ($base->query($sql) as $row) { foreach ($base->query($sql) as $row) {
$output.='<a href="'.$our_php_root.'/default_doc_details.php?gexf='.urlencode($gexf).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> "; $output.='<a href="default_doc_details.php?gexf='.urlencode($gexf).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> ";
$external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="'.$our_libs_root.'/img/gs.png"></a>'; $external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="img/gs.png"></a>';
} }
// get the authors // get the authors
......
twbackends/phpAPI/parameters_details.php
View file @ 7fa9d71a
...@@ -49,9 +49,11 @@ $ndtype = $_GET["type"]; ...@@ -49,9 +49,11 @@ $ndtype = $_GET["type"];
$ntid = null; $ntid = null;
$my_conf = null; $my_conf = null;
// legacy types => generic types // legacy types => generic types with 0 as default
if ($ndtype == 'semantic') { $ntid = 0; } if ($ndtype == 'social') { $ntid = 1; }
else { $ntid = 1; } else { $ntid = 0; }
// echodump("params: node type id", $ntid);
if (! $conf[$gexf][$ntid]['active']) { if (! $conf[$gexf][$ntid]['active']) {
errmsg("not active", "your graph ($gexf)"); errmsg("not active", "your graph ($gexf)");
...@@ -63,11 +65,5 @@ else { ...@@ -63,11 +65,5 @@ else {
} }
// echodump("params: reldb", $graphdb); // echodump("params: reldb", $graphdb);
// echodump("params: node type id", $ntid);
// echodump("graphdb", $graphdb);
?> ?>
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