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clinicaltrials
Commit a7dcce80 authored by Romain Loth's avatar Romain Loth
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removing previous tinawebJS subtree to recreate it inside static/ dir

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tinawebJS/DataScanner.js deleted 100755 → 0
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function scanDataFolder(){
$.ajax({
type: 'GET',
url: 'php/DirScan_main.php',
//data: "type="+type+"&query="+jsonparams,
//contentType: "application/json",
//dataType: 'json',
success : function(data){
console.log(data);
dataFolderTree=data;
},
error: function(){
console.log('Page Not found: updateLeftPanel_uni()');
}
});
}
function getGexfPath(v){
gexfpath=(gexfDictReverse[v])?gexfDictReverse[v]:v;
return gexfpath;
}
function getGexfLegend(gexfPath){
legend=(gexfDict[gexfPath])?gexfDict[gexfPath]:gexfPath;
return legend;
}
function jsActionOnGexfSelector(gexfLegend){
window.location=window.location.origin+window.location.pathname+"?file="+encodeURIComponent(getGexfPath(gexfLegend));
}
function listGexfs(){
divlen=$("#gexfs").length;
if(divlen>0) {
param = JSON.stringify(gexfDict);
$.ajax({
type: 'GET',
url: 'php/listFiles.php',
//contentType: "application/json",
//dataType: 'json',
success : function(data){
html="<select style='width:150px;' ";
javs='onchange="'+'jsActionOnGexfSelector(this.value);'+'"';
html+=javs;
html+=">";
html+='<option selected>[More Graphs]</option>';
for(var i in data){
//pr("path: "+data[i]);
//pr("legend: "+getGexfLegend(data[i]));
//pr("");
html+="<option>"+getGexfLegend(data[i])+"</option>";
}
html+="</select>";
$("#gexfs").html(html);
},
error: function(){
console.log("Page Not found.");
}
});
}
}
tinawebJS/asyncFA2.js deleted 100755 → 0
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tinawebJS/clean deleted 100755 → 0
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#!/bin/bash
#
find . -name '*~' -delete
tinawebJS/enviroment.js deleted 100755 → 0
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tinawebJS/extras_explorerjs.js deleted 100644 → 0
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tinawebJS/globalUtils.js deleted 100755 → 0
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function pr(msg) {
console.log(msg);
}
//to general utils
function getClientTime(){
var totalSec = new Date().getTime() / 1000;
var d = new Date();
var hours = d.getHours();
var minutes = parseInt( totalSec / 60 ) % 60;
var seconds = (totalSec % 60).toFixed(4);
var result = (hours < 10 ? "0" + hours : hours) + ":" + (minutes < 10 ? "0" + minutes : minutes) + ":" + (seconds < 10 ? "0" + seconds : seconds);
return result;
}
function compareNumbers(a, b) {
return a - b;
}
//python range(a,b) | range(a)
function calc_range(begin, end) {
if (typeof end === "undefined") {
end = begin; begin = 0;
}
var result = [], modifier = end > begin ? 1 : -1;
for ( var i = 0; i <= Math.abs(end - begin); i++ ) {
result.push(begin + i * modifier);
}
return result;
}
//to general utils (not used btw)
function cloneObject(source) {
for (i in source) {
if (typeof source[i] == 'source') {
this[i] = new cloneObject(source[i]);
}
else{
this[i] = source[i];
}
}
}
function isUndef(variable){
if(typeof(variable)==="undefined") return true;
else return false;
}
$.fn.toggleClick = function(){
methods = arguments, // store the passed arguments for future reference
count = methods.length; // cache the number of methods
//use return this to maintain jQuery chainability
return this.each(function(i, item){
// for each element you bind to
index = 0; // create a local counter for that element
$(item).click(function(){ // bind a click handler to that element
return methods[index++ % count].apply(this,arguments); // that when called will apply the 'index'th method to that element
// the index % count means that we constrain our iterator between 0 and (count-1)
});
});
};
ourGetUrlParam = (function () {
var get = {
push:function (key,value){
var cur = this[key];
if (cur.isArray){
this[key].push(value);
}else {
this[key] = [];
this[key].push(cur);
this[key].push(value);
}
}
},
decode = function (s, rmSpaceFlag) {
s = decodeURIComponent(s.replace(/\+/g, ' '));
return rmSpaceFlag ? s.replace(/\s+/g,'') : s;
};
document.location.search.replace(
/\??(?:([^=]+)=(?:%22(.*?)%22|"([^"]*)"|([^&]*))&?)/g,
// ^^^^^^^ ^^^^^ | ^^^^^^^ |^^^^^^^
// key valUrlquoted|valQuoted|valRaw
// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
// wholeMatch
function (wholeMatch,key,valUrlquoted,valQuoted,valRaw) {
// exemple
// -------
// wholeMatch: ?type=%22filter%22&
// key: type
// valUrlquoted: filter
// debug
// -----
// console.log("getUrlParam re vars wholeMatch :", wholeMatch)
// console.log("getUrlParam re vars key :", key)
// console.log("getUrlParam re vars valUrlquoted:", valUrlquoted)
// console.log("getUrlParam re vars valQuoted :", valQuoted)
// console.log("getUrlParam re vars valRaw :", valRaw)
var val = ""
if (typeof valUrlquoted != "undefined") {
val = valUrlquoted
}
else if (typeof valQuoted != "undefined") {
val = valQuoted
}
else {
val = valRaw
}
if (get[decode(key,true)]){
get.push(decode(key,true),decode(val));
}else {
get[decode(key,true)] = decode(val);
}
// debug
// -----
// console.log("getUrlParam output dict:\n ", JSON.stringify(get))
});
return get;
})();
function ArraySortByValue(array, sortFunc){
var tmp = [];
oposMAX=0;
for (var k in array) {
if (array.hasOwnProperty(k)) {
tmp.push({
key: k,
value: array[k]
});
if((array[k]) > oposMAX) oposMAX= array[k];
}
}
tmp.sort(function(o1, o2) {
return sortFunc(o1.value, o2.value);
});
return tmp;
}
function ArraySortByKey(array, sortFunc){
var tmp = [];
for (var k in array) {
if (array.hasOwnProperty(k)) {
tmp.push({
key: k,
value: array[k]
});
}
}
tmp.sort(function(o1, o2) {
return sortFunc(o1.key, o2.key);
});
return tmp;
}
function is_empty(obj) {
// Assume if it has a length property with a non-zero value
// that that property is correct.
if (obj.length && obj.length > 0) return false;
if (obj.length && obj.length === 0) return true;
for (var key in obj) {
if (hasOwnProperty.call(obj, key)) return false;
}
return true;
}
function getByID(elem) {
return document.getElementById(elem);
}
function hex2rga(sent_hex) {
result = []
hex = ( sent_hex.charAt(0) === "#" ? sent_hex.substr(1) : sent_hex );
// check if 6 letters are provided
if (hex.length === 6) {
result = calculateFull(hex);
return result;
}
else if (hex.length === 3) {
result = calculatePartial(hex);
return result;
}
}
function calculateFull(hex) {
var r = parseInt(hex.substring(0, 2), 16);
var g = parseInt(hex.substring(2, 4), 16);
var b = parseInt(hex.substring(4, 6), 16);
return [r,g,b];
}
// function for calculating 3 letters hex value
function calculatePartial(hex) {
var r = parseInt(hex.substring(0, 1) + hex.substring(0, 1), 16);
var g = parseInt(hex.substring(1, 2) + hex.substring(1, 2), 16);
var b = parseInt(hex.substring(2, 3) + hex.substring(2, 3), 16);
return [r,g,b];
}
function componentToHex(c) {
var hex = c.toString(16);
return hex.length == 1 ? "0" + hex : hex;
}
function rgbToHex(r, g, b) {
return "#" + componentToHex(r) + componentToHex(g) + componentToHex(b);
}
tinawebJS/main.js deleted 100755 → 0
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tinawebJS/methods.js deleted 100755 → 0
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tinawebJS/minimap.js deleted 100755 → 0
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tinawebJS/settings_explorerjs.js deleted 100644 → 0
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/*
* Customize as you want ;)
*/
// ============ < DEVELOPER OPTIONS > ============
var geomap=false;
var minimap=false;
var getAdditionalInfo=false;//for topPapers div
var mainfile=false;
// ourGetUrlParam.file = "data/testgraph.json";
var dataFolderTree = {};
var gexfDict={};
var egonode = {}
var iwantograph = "";
var bridge={};
external="";
//external="http://tina.iscpif.fr/explorerjs/";//Just if you want to use the server-apps from tina.server
bridge["forFilteredQuery"] = "comexAPI" //external+"php/bridgeClientServer_filter.php";
bridge["forNormalQuery"] = "comexAPI" //external+"php/bridgeClientServer.php";
ircNick="";
ircCHN="";
var catSoc = "Document";
var catSem = "NGram";
var sizeMult = [];
sizeMult[catSoc] = 0.0;
sizeMult[catSem] = 0.0;
var inactiveColor = '#666';
var startingNodeId = "1";
var minLengthAutoComplete = 1;
var maxSearchResults = 10;
var strSearchBar = "Search";
var cursor_size_min= 0;
var cursor_size= 0;
var cursor_size_max= 100;
var desirableTagCloudFont_MIN=12;
var desirableTagCloudFont_MAX=20;
var desirableNodeSizeMIN=1;
var desirableNodeSizeMAX=12;
var desirableScholarSize=6; //Remember that all scholars have the same size!
/*
*Three states:
* - true: fa2 running at start
* - false: fa2 stopped at start, button exists
* - "off": button doesn't exist, fa2 stopped forever
**/ var fa2enabled=false;//"off";
var stopcriteria = false;
var iterationsFA2=1000;
var seed=999999999;//defaultseed
var semanticConverged=false;
var showLabelsIfZoom=2.0;
var greyColor = "#9b9e9e";
// ============ < SIGMA.JS PROPERTIES > ============
var sigmaJsDrawingProperties = {
defaultLabelColor: 'black',
defaultLabelSize: 10,//in fact I'm using it as minLabelSize'
defaultLabelBGColor: '#fff',
defaultLabelHoverColor: '#000',
labelThreshold: 6,
defaultEdgeType: 'curve',
borderSize: 2.5,//Something other than 0
nodeBorderColor: "default",//exactly like this
defaultNodeBorderColor: "black"//,//Any color of your choice
//defaultBorderView: "always"
};
var sigmaJsGraphProperties = {
minEdgeSize: 2,
maxEdgeSize: 2
};
var sigmaJsMouseProperties = {
minRatio:0.1,
maxRatio: 15
};
// ============ < / SIGMA.JS PROPERTIES > ============
// ============ < / DEVELOPER OPTIONS > ============
// ============ < VARIABLES.JS > ============
//"http://webchat.freenode.net/?nick=Ademe&channels=#anoe"
var ircUrl="http://webchat.freenode.net/?nick="+ircNick+"&channels="+ircCHN;
var twjs="tinawebJS/";
var categories = {};
var categoriesIndex = [];
var gexf;
//var zoom=0;
var checkBox=false;
var overNodes=false;
var shift_key=false;
var NOW="A";
var PAST="--";
var swclickActual="";
var swclickPrev="";
var swMacro=true;
var socsemFlag=false;
var constantNGramFilter;
// var nodeFilterA_past = ""
// var nodeFilterA_now = ""
// var nodeFilterB_past = ""
// var nodeFilterB_now = ""
var lastFilter = []
lastFilter["#sliderBNodeWeight"] = "-"
lastFilter["#sliderAEdgeWeight"] = "-"
lastFilter["#sliderBEdgeWeight"] = "-"
// var edgeFilterB_past = ""
// var edgeFilterB_now = ""
var overviewWidth = 200;
var overviewHeight = 175;
var overviewScale = 0.25;
var overviewHover=false;
var moveDelay = 80, zoomDelay = 2;
//var Vecindad;
var partialGraph;
var otherGraph;
var Nodes = [];
var Edges = [];
var nodeslength=0;
var labels = [];
var numberOfDocs=0;
var numberOfNGrams=0;
var selections = [];
var deselections={};
var opossites = {};
var opos=[];
var oposMAX;
var matches = [];
var nodes1 = [];
var nodes2 = [];
var bipartiteD2N = [];
var bipartiteN2D = [];
var flag=0;
var firstime=0;
var leftright=true;
var edgesTF=false;
//This variables will be updated in sigma.parseCustom.js
var minNodeSize=1.00;
var maxNodeSize=5.00;
var minEdgeWeight=5.0;
var maxEdgeWeight=0.0;
//---------------------------------------------------
var bipartite=false;
var gexfDictReverse={}
for (var i in gexfDict){
gexfDictReverse[gexfDict[i]]=i;
}
var colorList = ["#000000", "#FFFF00", "#1CE6FF", "#FF34FF", "#FF4A46", "#008941", "#006FA6", "#A30059", "#FFDBE5", "#7A4900", "#0000A6", "#63FFAC", "#B79762", "#004D43", "#8FB0FF", "#997D87", "#5A0007", "#809693", "#FEFFE6", "#1B4400", "#4FC601", "#3B5DFF", "#4A3B53", "#FF2F80", "#61615A", "#BA0900", "#6B7900", "#00C2A0", "#FFAA92", "#FF90C9", "#B903AA", "#D16100", "#DDEFFF", "#000035", "#7B4F4B", "#A1C299", "#300018", "#0AA6D8", "#013349", "#00846F", "#372101", "#FFB500", "#C2FFED", "#A079BF", "#CC0744", "#C0B9B2", "#C2FF99", "#001E09", "#00489C", "#6F0062", "#0CBD66", "#EEC3FF", "#456D75", "#B77B68", "#7A87A1", "#788D66", "#885578", "#FAD09F", "#FF8A9A", "#D157A0", "#BEC459", "#456648", "#0086ED", "#886F4C","#34362D", "#B4A8BD", "#00A6AA", "#452C2C", "#636375", "#A3C8C9", "#FF913F", "#938A81", "#575329", "#00FECF", "#B05B6F", "#8CD0FF", "#3B9700", "#04F757", "#C8A1A1", "#1E6E00", "#7900D7", "#A77500", "#6367A9", "#A05837", "#6B002C", "#772600", "#D790FF", "#9B9700", "#549E79", "#FFF69F", "#201625", "#72418F", "#BC23FF", "#99ADC0", "#3A2465", "#922329", "#5B4534", "#FDE8DC", "#404E55", "#0089A3", "#CB7E98", "#A4E804", "#324E72", "#6A3A4C", "#83AB58", "#001C1E", "#D1F7CE", "#004B28", "#C8D0F6", "#A3A489", "#806C66", "#222800", "#BF5650", "#E83000", "#66796D", "#DA007C", "#FF1A59", "#8ADBB4", "#1E0200", "#5B4E51", "#C895C5", "#320033", "#FF6832", "#66E1D3", "#CFCDAC", "#D0AC94", "#7ED379", "#012C58"];
var RVUniformC = function(seed){
this.a=16807;
this.b=0;
this.m=2147483647;
this.u;
this.seed=seed;
this.x = this.seed;
// this.generar = function(n){
// uniforme = [];
// x = 0.0;
// x = this.seed;
// for(i = 1; i < n ; i++){
// x = ((x*this.a)+this.b)%this.m;
// uniforme[i] = x/this.m;
// }
// return uniforme;
// };
this.getRandom = function(){
x = ((this.x*this.a)+this.b)%this.m;
this.x = x;
this.u = this.x/this.m;
return this.u;
};
}
//unifCont = new RVUniformC(100000000)
tinawebJS/sigma.forceatlas2.js deleted 100755 → 0
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tinawebJS/sigma.min.js deleted 100755 → 0
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tinawebJS/sigma.parseCustom.js deleted 100755 → 0
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tinawebJS/sigmaUtils.js deleted 100755 → 0
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