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clinicaltrials
Commit bee9be79 authored by Romain Loth's avatar Romain Loth
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settings and details

parent 52c489c2
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Showing with 60 additions and 34 deletions
explorerjs.html
View file @ bee9be79
......@@ -9,7 +9,7 @@
<!-- ## fonts ## -->
<link type="text/css" href="https://fonts.googleapis.com/css?family=Ubuntu" rel="stylesheet">
<link type="text/css" href="https://fonts.googleapis.com/css?family=Droid%20Sans" rel="stylesheet">
<!-- <link type="text/css" href="https://fonts.googleapis.com/css?family=Droid%20Sans" rel="stylesheet"> -->
<link rel="stylesheet" href="static/explorerlibs/jquery/jquery-ui.css" media="screen">
<link rel="stylesheet" href="static/explorerlibs/bootstrap/css/bootstrap.css" media="screen">
......@@ -18,25 +18,12 @@
<link rel="stylesheet" href="static/explorerlibs/css2/sidebar.css" media="screen">
<link rel="stylesheet" href="static/explorerlibs/bootswatch/css/bootswatch.css">
<link rel="stylesheet" href="static/explorerlibs/css2/font.css" type="text/css">
<link rel="stylesheet" href="static/css/comex.css" type="text/css">
<style>
.sigma_labels_canvas {
letter-spacing: -.1em;
/*^^^^^^^^^^^^^^
must be the same in hover_canvas */
opacity: .9;
}
.sigma_hover_canvas {
letter-spacing: -.1em;
}
</style>
<!-- <link rel="stylesheet" href="static/css/comex.css" type="text/css"> -->
</head>
<body class="gradient">
<body>
<!-- this is the topbar -->
<div id="fixedtop" class="navbar navbar-default navbar-fixed-top">
<div class="container">
......
services/db_to_tina_api/extractDataCustom.py
View file @ bee9be79
......@@ -533,7 +533,10 @@ class MyExtractor:
if neigh != str(scholar):
source=str(scholar)
target=str(neigh)
weight=self.log_sim(neighbors[str(neigh)],
# weight=self.log_sim(neighbors[str(neigh)],
# scholarsMatrix[nodeId1]['occ'],
# scholarsMatrix[neigh]['occ'])
weight=self.jaccard(neighbors[str(neigh)],
scholarsMatrix[nodeId1]['occ'],
scholarsMatrix[neigh]['occ'])
#mlog("DEBUG", "\t"+source+","+target+" = "+str(weight))
......
services/user.py
View file @ bee9be79
......@@ -267,9 +267,15 @@ def doors_login(email, password, config):
else:
raise Exception('Doors request failed')
if not doorsProto:
# ID is a string of the form: "UserID(12849e74-b039-481f-b8eb-1e52562fbda6)"
capture = match(r'UserID\(([0-9a-f-]+)\)', uid)
if capture:
uid = capture.groups()[0]
return uid
def doors_register(email, password, name, config):
def doors_register(email, password, name, config=REALCONFIG):
"""
Remote query to Doors API to register a user
"""
......
static/explorerlibs/css2/custom.css
View file @ bee9be79
......@@ -123,11 +123,11 @@
.gradient {
background-color: #f0f0f8;
background-image: -webkit-radial-gradient(#ffffff, #d8d8e0); background-image: -moz-radial-gradient(#ffffff, #d8d8e0);
/*background-image: -webkit-radial-gradient(#ffffff, #d8d8e0); background-image: -moz-radial-gradient(#ffffff, #d8d8e0);*/
/*background-color: #434343;*/
/*background-image: linear-gradient(#434343, #282828);*/
background-image: linear-gradient(0deg, transparent 24%, rgba(0, 0, 0, .02) 25%, rgba(0, 0, 0, .02) 26%, transparent 27%, transparent 74%, rgba(0, 0, 0, .02) 75%, rgba(0, 0, 0, .02) 76%, transparent 77%, transparent), linear-gradient(90deg, transparent 24%, rgba(0, 0, 0, .02) 25%, rgba(0, 0, 0, .02) 26%, transparent 27%, transparent 74%, rgba(0, 0, 0, .02) 75%, rgba(0, 0, 0, .02) 76%, transparent 77%, transparent);
background-size: 50px 50px;
/*background-image: linear-gradient(0deg, transparent 24%, rgba(0, 0, 0, .02) 25%, rgba(0, 0, 0, .02) 26%, transparent 27%, transparent 74%, rgba(0, 0, 0, .02) 75%, rgba(0, 0, 0, .02) 76%, transparent 77%, transparent), linear-gradient(90deg, transparent 24%, rgba(0, 0, 0, .02) 25%, rgba(0, 0, 0, .02) 26%, transparent 27%, transparent 74%, rgba(0, 0, 0, .02) 75%, rgba(0, 0, 0, .02) 76%, transparent 77%, transparent);*/
/*background-size: 50px 50px;*/
}
/* ZOOM IN OUT */
......
static/js/comex_page_rootindex.js 0 → 100644
View file @ bee9be79
/**
* @fileoverview
* rootindex link fixing
* @todo
* - package.json
*
* @version 1
* @copyright ISCPIF-CNRS 2016
* @author romain.loth@iscpif.fr
*
*/
// just workaround for the profile/register iframe's loading mechanism to https
// context:
// curiously, a relative path for iframe src:'/services/user/register'
// doesn't work like other relative paths (reproducing current scheme)
// so we put an absolute path and change the domain name at rendering.
var relsrc = document.getElementById('inlink').src
document.getElementById('inlink').src = 'https://'+location.host+'/'+relsrc
console.log("rootindex controllers load OK")
static/tinawebJS/asyncFA2.js
View file @ bee9be79
......@@ -358,11 +358,15 @@ var ForceAtlas2 = function(graph) {
var graph = this.graph;
// Tuning
if (graph.nodes.length >= 100) {
this.p.scalingRatio = 2.0;
} else {
this.p.scalingRatio = 10.0;
}
// if (graph.nodes.length >= 100) {
// this.p.scalingRatio = 2.0;
// } else {
// this.p.scalingRatio = 10.0;
// }
this.p.scalingRatio = 100 / Math.sqrt(graph.nodes.length)
console.warn ("this p scalingRatio", this.p.scalingRatio, "for length:", graph.nodes.length)
// POSS: trying proportional scaling instead of if
// NB: *smaller* scaling ratio improves non overlap of close neighboors
......
static/tinawebJS/main.js
View file @ bee9be79
......@@ -127,7 +127,7 @@ function bringTheNoise(sourceinfo,type){
$('.etabs a[href="#tabs1"]').trigger('click');
});
printStates()
// printStates()
pr(" ############ / changeTYPE click");
pr("")
});
......
static/tinawebJS/settings_explorerjs.js
View file @ bee9be79
......@@ -33,7 +33,7 @@ var catSem = "NGram";
// newSize = oldSize + (sizeMult * oldSize)
var sizeMult = [];
sizeMult[catSoc] = 0.7;
sizeMult[catSoc] = -.5;
sizeMult[catSem] = 0.0;
var inactiveColor = '#666';
......@@ -59,7 +59,7 @@ var desirableScholarSize=6; //Remember that all scholars have the same size!
* - "off": button doesn't exist, fa2 stopped forever
**/ var fa2enabled=false;//"off";
var stopcriteria = false;
var iterationsFA2=2000; // <= should be proportional to graph size
var iterationsFA2=3000; // <= should be proportional to graph size
// TODO also adjust speed after initial
var seed=999999999;//defaultseed
var semanticConverged=false;
......@@ -75,12 +75,13 @@ var sigmaJsDrawingProperties = {
defaultLabelSize: 10,//in fact I'm using it as minLabelSize'
defaultLabelBGColor: '#fff',
defaultLabelHoverColor: '#000',
labelThreshold: 8,
labelSizeRatio: 1.7, // for proportional display only
labelThreshold: 7,
labelSizeRatio: 1.3, // for proportional display only
defaultEdgeType: 'curve',
font:"Droid Sans",
// font:"Droid Sans",
font:"Ubuntu",
borderSize: 2.5,//Something other than 0
borderSize: 2,//Something other than 0
nodeBorderColor: "default",//exactly like this
defaultNodeBorderColor: "black"//,//Any color of your choice
//defaultBorderView: "always"
......
templates/rootindex.html
View file @ bee9be79
......@@ -216,7 +216,7 @@
<div class="panel panel-default wwwpanel">
<div class="panel-heading">
<p class="pull-up-right">
<a target="_blank" href="/services/user/{% if current_user.info %}profile{% else %}register{% endif %}">
<a id="inlink" target="_blank" href="/services/user/{% if current_user.info %}profile{% else %}register{% endif %}">
<span class="glyphicon glyphicon-new-window"></span>
Open in another tab
</a>
......@@ -283,5 +283,6 @@
// ---------
var uinfo = {{ (current_user.json_info | safe) if current_user.info else ("null" | safe) }};
</script>
<script src="{{ url_for('static', filename='js/comex_page_rootindex.js') }}"></script>
{% endblock %}
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