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david Chavalarias
clinicaltrials
Commits
c184fe5a
Commit
c184fe5a
authored
Jan 20, 2017
by
Romain Loth
Browse files
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Plain Diff
debug DB format changes related
parent
923da642
Changes
4
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Showing
4 changed files
with
48 additions
and
11 deletions
+48
-11
directory_content.php
php_library/directory_content.php
+1
-0
print_scholar_directory.php
print_scholar_directory.php
+1
-1
db.py
services/db.py
+33
-0
main.py
services/main.py
+13
-10
No files found.
php_library/directory_content.php
View file @
c184fe5a
...
@@ -26,6 +26,7 @@ $lab_list=array();
...
@@ -26,6 +26,7 @@ $lab_list=array();
// ajout des scholars
// ajout des scholars
$loop
=
0
;
// NB this array was prepared in print_directory or print_scholar_directory
// NB this array was prepared in print_directory or print_scholar_directory
foreach
(
$scholars
as
$scholar
)
{
foreach
(
$scholars
as
$scholar
)
{
...
...
print_scholar_directory.php
View file @
c184fe5a
...
@@ -107,7 +107,7 @@ HERE_QUERY;
...
@@ -107,7 +107,7 @@ HERE_QUERY;
arsort
(
$scholar_array
);
arsort
(
$scholar_array
);
$scholar_id_array
=
array_keys
(
$scholar_array
);
$scholar_id_array
=
array_keys
(
$scholar_array
);
var_dump
(
$scholar_id_array
)
.
"<br/>"
;
//
var_dump($scholar_id_array)."<br/>" ;
// liste des chercheurs
// liste des chercheurs
$scholars
=
array
();
$scholars
=
array
();
...
...
services/db.py
View file @
c184fe5a
...
@@ -76,6 +76,39 @@ def connect_db(config=REALCONFIG):
...
@@ -76,6 +76,39 @@ def connect_db(config=REALCONFIG):
db
=
"comex_shared"
db
=
"comex_shared"
)
)
def
doors_uid_to_luid
(
doors_uid
):
"""
Find corresponding luid
"""
db
=
connect_db
()
db_c
=
db
.
cursor
()
stmt
=
"""
SELECT luid FROM scholars
WHERE doors_uid = "
%
s"
"""
%
doors_uid
n_rows
=
db_c
.
execute
(
stmt
)
luid
=
None
if
n_rows
>
1
:
db
.
close
()
raise
ValueError
(
"non unique doors_uid
%
s"
%
doors_uid
)
elif
n_rows
==
1
:
luid
=
db_c
.
fetchone
()[
0
]
db
.
close
()
return
luid
return
connect
(
host
=
config
[
'SQL_HOST'
],
port
=
int
(
config
[
'SQL_PORT'
]),
user
=
"root"
,
# POSS change db ownership to a comexreg user
passwd
=
"very-safe-pass"
,
db
=
"comex_shared"
)
def
get_field_aggs
(
a_field
,
hapax_threshold
=
int
(
REALCONFIG
[
'HAPAX_THRESHOLD'
])):
def
get_field_aggs
(
a_field
,
hapax_threshold
=
int
(
REALCONFIG
[
'HAPAX_THRESHOLD'
])):
"""
"""
Use case: api/aggs?field=a_field
Use case: api/aggs?field=a_field
...
...
services/main.py
View file @
c184fe5a
...
@@ -43,7 +43,7 @@ if __package__ == 'services':
...
@@ -43,7 +43,7 @@ if __package__ == 'services':
from
services.user
import
User
,
login_manager
,
doors_login
,
UCACHE
from
services.user
import
User
,
login_manager
,
doors_login
,
UCACHE
from
services.text
import
keywords
from
services.text
import
keywords
from
services.tools
import
restparse
,
mlog
,
re_hash
,
REALCONFIG
from
services.tools
import
restparse
,
mlog
,
re_hash
,
REALCONFIG
from
services.db
import
connect_db
,
get_or_create_tokitems
,
save_pairs_sch_tok
,
delete_pairs_sch_tok
,
get_or_create_affiliation
,
save_scholar
,
get_field_aggs
from
services.db
import
connect_db
,
get_or_create_tokitems
,
save_pairs_sch_tok
,
delete_pairs_sch_tok
,
get_or_create_affiliation
,
save_scholar
,
get_field_aggs
,
doors_uid_to_luid
from
services.db_to_tina_api.extractDataCustom
import
MyExtractor
as
MySQL
from
services.db_to_tina_api.extractDataCustom
import
MyExtractor
as
MySQL
else
:
else
:
# when this script is run directly
# when this script is run directly
...
@@ -51,7 +51,7 @@ else:
...
@@ -51,7 +51,7 @@ else:
from
user
import
User
,
login_manager
,
doors_login
,
UCACHE
from
user
import
User
,
login_manager
,
doors_login
,
UCACHE
from
text
import
keywords
from
text
import
keywords
from
tools
import
restparse
,
mlog
,
re_hash
,
REALCONFIG
from
tools
import
restparse
,
mlog
,
re_hash
,
REALCONFIG
from
db
import
connect_db
,
get_or_create_tokitems
,
save_pairs_sch_tok
,
delete_pairs_sch_tok
,
get_or_create_affiliation
,
save_scholar
,
get_field_aggs
from
db
import
connect_db
,
get_or_create_tokitems
,
save_pairs_sch_tok
,
delete_pairs_sch_tok
,
get_or_create_affiliation
,
save_scholar
,
get_field_aggs
,
doors_uid_to_luid
from
db_to_tina_api.extractDataCustom
import
MyExtractor
as
MySQL
from
db_to_tina_api.extractDataCustom
import
MyExtractor
as
MySQL
# ============= app creation ============
# ============= app creation ============
...
@@ -255,18 +255,19 @@ def login():
...
@@ -255,18 +255,19 @@ def login():
pwd
=
request
.
form
[
'password'
]
pwd
=
request
.
form
[
'password'
]
# we do our doors request here server-side to avoid MiM attack on result
# we do our doors request here server-side to avoid MiM attack on result
uid
=
doors_login
(
email
,
pwd
,
config
)
doors_uid
=
doors_login
(
email
,
pwd
,
config
)
luid
=
doors_uid_to_luid
(
doors_uid
)
if
uid
:
if
l
uid
:
login_ok
=
login_user
(
User
(
uid
))
login_ok
=
login_user
(
User
(
l
uid
))
mlog
(
'INFO'
,
'login of
%
s was
%
s'
%
(
uid
,
str
(
login_ok
)))
mlog
(
'INFO'
,
'login of
%
s was
%
s'
%
(
l
uid
,
str
(
login_ok
)))
# TODO check cookie
# TODO check cookie
# login_ok = login_user(User(uid), remember=True)
# login_ok = login_user(User(
l
uid), remember=True)
# -------------
#
-------------
# creates REMEMBER_COOKIE_NAME
#
creates REMEMBER_COOKIE_NAME
# which is itself bound to session cookie
#
which is itself bound to session cookie
if
login_ok
:
if
login_ok
:
# normal user
# normal user
...
@@ -407,6 +408,8 @@ def register():
...
@@ -407,6 +408,8 @@ def register():
# dbg
# dbg
# mlog("DEBUG", str(captcha_verifhash))
# mlog("DEBUG", str(captcha_verifhash))
clean_records
=
{}
if
captcha_userhash
!=
captcha_verifhash
:
if
captcha_userhash
!=
captcha_verifhash
:
mlog
(
"INFO"
,
"pb captcha rejected"
)
mlog
(
"INFO"
,
"pb captcha rejected"
)
form_accepted
=
False
form_accepted
=
False
...
...
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