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gargantext
crawlers
pubmed
Commits
ace45a17
Commit
ace45a17
authored
May 13, 2019
by
Mael NICOLAS
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IO () ~> IO [PubMed]
parent
1ffff0cb
Changes
1
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1 changed file
with
7 additions
and
5 deletions
+7
-5
Main.hs
app/Main.hs
+7
-5
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app/Main.hs
View file @
ace45a17
...
@@ -16,23 +16,25 @@ import qualified Data.Text as T
...
@@ -16,23 +16,25 @@ import qualified Data.Text as T
runParser
::
Show
res
=>
(
Cursor
->
res
)
->
LBS
.
ByteString
->
res
runParser
::
Show
res
=>
(
Cursor
->
res
)
->
LBS
.
ByteString
->
res
runParser
parser
=
parser
.
fromDocument
.
parseLBS_
def
runParser
parser
=
parser
.
fromDocument
.
parseLBS_
def
runSimpleFindPubmedAbstractRequest
::
T
.
Text
->
IO
()
runSimpleFindPubmedAbstractRequest
::
T
.
Text
->
IO
[
PubMed
]
runSimpleFindPubmedAbstractRequest
rq
=
do
runSimpleFindPubmedAbstractRequest
rq
=
do
manager'
<-
newManager
tlsManagerSettings
manager'
<-
newManager
tlsManagerSettings
res
<-
runClientM
res
<-
runClientM
(
search
(
Just
rq
))
(
search
(
Just
rq
))
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
case
res
of
case
res
of
(
Left
err
)
->
print
err
(
Left
err
)
->
return
[]
(
Right
(
BsXml
docs
))
->
do
(
Right
(
BsXml
docs
))
->
do
let
docIds
=
runParser
parseDocId
docs
let
docIds
=
runParser
parseDocId
docs
res'
<-
runClientM
res'
<-
runClientM
(
fetch
(
Just
"pubmed"
)
(
Just
"abstract"
)
docIds
)
(
fetch
(
Just
"pubmed"
)
(
Just
"abstract"
)
docIds
)
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
case
res'
of
case
res'
of
(
Left
err
)
->
print
err
(
Left
err
)
->
return
[]
(
Right
(
BsXml
abstracts
))
->
(
Right
(
BsXml
abstracts
))
->
p
rint
=<<
p
ubMedParser
abstracts
pubMedParser
abstracts
main
::
IO
()
main
::
IO
()
main
=
runSimpleFindPubmedAbstractRequest
"organ"
main
=
do
pubmeds
<-
runSimpleFindPubmedAbstractRequest
"organ"
print
pubmeds
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