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gargantext
crawlers
pubmed
Commits
cd47885d
Commit
cd47885d
authored
May 23, 2019
by
Mael NICOLAS
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fix
#1
parent
ace45a17
Changes
2
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2 changed files
with
7 additions
and
5 deletions
+7
-5
Main.hs
app/Main.hs
+3
-2
Parser.hs
src/PUBMED/Parser.hs
+4
-3
No files found.
app/Main.hs
View file @
cd47885d
...
@@ -31,10 +31,11 @@ runSimpleFindPubmedAbstractRequest rq = do
...
@@ -31,10 +31,11 @@ runSimpleFindPubmedAbstractRequest rq = do
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
(
mkClientEnv
manager'
$
BaseUrl
Https
"eutils.ncbi.nlm.nih.gov"
443
"entrez/eutils"
)
case
res'
of
case
res'
of
(
Left
err
)
->
return
[]
(
Left
err
)
->
return
[]
(
Right
(
BsXml
abstracts
))
->
(
Right
(
BsXml
abstracts
))
->
do
_
<-
print
abstracts
pubMedParser
abstracts
pubMedParser
abstracts
main
::
IO
()
main
::
IO
()
main
=
do
main
=
do
pubmeds
<-
runSimpleFindPubmedAbstractRequest
"
organ
"
pubmeds
<-
runSimpleFindPubmedAbstractRequest
"
risk
"
print
pubmeds
print
pubmeds
src/PUBMED/Parser.hs
View file @
cd47885d
...
@@ -38,7 +38,8 @@ parseDocId cursor = fst <$>
...
@@ -38,7 +38,8 @@ parseDocId cursor = fst <$>
identity
::
a
->
a
identity
::
a
->
a
identity
x
=
x
identity
x
=
x
manyTagsUntil
::
MonadThrow
m
=>
Name
manyTagsUntil
::
MonadThrow
m
=>
Name
->
ConduitT
Event
o
m
b
->
ConduitT
Event
o
m
b
->
ConduitT
Event
o
m
(
Maybe
b
)
->
ConduitT
Event
o
m
(
Maybe
b
)
manyTagsUntil
name
f
=
do
manyTagsUntil
name
f
=
do
...
@@ -97,11 +98,11 @@ pubMedParser bstring = runConduit $ parseLBS def bstring
...
@@ -97,11 +98,11 @@ pubMedParser bstring = runConduit $ parseLBS def bstring
parseArticleSet
::
MonadThrow
m
=>
ConduitT
Event
PubMed
m
()
parseArticleSet
::
MonadThrow
m
=>
ConduitT
Event
PubMed
m
()
parseArticleSet
=
parseArticleSet
=
force
"
force"
$
tagIgnoreAttrs
"PubmedArticleSet"
$
manyYield
parsePubMedArticle
force
"
PubmedArticleSet required"
$
manyTagsUntil
"PubmedArticleSet"
$
manyYield
parsePubMedArticle
parsePubMedArticle
::
MonadThrow
m
=>
ConduitT
Event
o
m
(
Maybe
PubMed
)
parsePubMedArticle
::
MonadThrow
m
=>
ConduitT
Event
o
m
(
Maybe
PubMed
)
parsePubMedArticle
=
parsePubMedArticle
=
tagIgnoreAttrs
"PubmedArticle"
parsePubMedArticle'
manyTagsUntil
"PubmedArticle"
parsePubMedArticle'
parsePubMedArticle'
::
MonadThrow
m
=>
ConduitT
Event
o
m
PubMed
parsePubMedArticle'
::
MonadThrow
m
=>
ConduitT
Event
o
m
PubMed
parsePubMedArticle'
=
do
parsePubMedArticle'
=
do
...
...
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