Too many refactorings along the way unfortunately

Resolve "Move corenlp to separate repo/flake"

Closes #483

See merge request !434

commit 4f25aa65
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Sat Aug 2 13:04:35 2025 +0200

    [CI] sudo with chown at the end of tests

commit a4d26226
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Sat Aug 2 06:55:27 2025 +0200

    [CI] no /root/.config needed

commit 1f8eaa0b
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 21:27:01 2025 +0200

    [CI] more permission fixes

commit c4d9b175
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 20:43:09 2025 +0200

    [CI] more permission fixes for gitlab-ci

commit f85213fd
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 19:34:35 2025 +0200

    [CI] add sudo to dockerfile, change dir owner in CI

commit f14c6246
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 08:42:32 2025 +0200

    [CI] modify dockerfile to build with test user

commit 1670cc4a
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 31 19:20:10 2025 +0200

    [CI] add verbose=2 for testing to check what is happening with CI timeouts

commit 210ba723
Merge: 1a213aeb 27192b88
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 31 09:22:52 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit 1a213aeb
Merge: d7aa1301 61aac410
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Jul 29 18:58:07 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit d7aa1301
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Jul 25 09:57:38 2025 +0200

    [CI] one more try to fix nix permission

commit b45e16eb
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Jul 11 07:24:53 2025 +0200

    [CI] writable permissions for nix db

commit 50f13d32
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 16:34:01 2025 +0200

    [CI] attempt at fixing nix db permissions

commit 76c1b9a6
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 14:44:55 2025 +0200

    [CI] fix /nix dir permissions

    Apparently, this is needed to run 'nix' inside tests (e.g. start corenlp)

commit 7edb97af
Merge: 19e752b8 64e2a689
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 11:56:04 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit 19e752b8
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 11:47:58 2025 +0200

    [tests] better startup of corenlp

    Take into account the async nature of createProcess. Add proper watch
    so that we monitor that coreNLP is running.

commit bde033f9
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 10:47:36 2025 +0200

    [nix] fix stdenv to be gcc 14, not 13

commit 1d4ceb07
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 07:03:15 2025 +0200

    [nix] add openblas as a dependency

commit 9dd4ebc3
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 9 14:44:28 2025 +0200

    [update-project-dependencie]

commit 120e205c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 9 12:50:38 2025 +0200

    [corenlp] some fixes to Dockerfile

commit 3a2b2079
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 3 19:21:37 2025 +0200

    [dockerfile] add fontconfig, to see if this is what causes errors on CI

    E.g.:
    https://gitlab.iscpif.fr/gargantext/haskell-gargantext/-/jobs/18643

    paginating QuantumComputing corpus works (MapTerms):            Fontconfig error: Cannot load default config file: No such file: (null)
    Fontconfig error: No writable cache directories

commit d9d4a09c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 3 14:02:30 2025 +0200

    [nix] don't use experimental features for corenlp nix call

    Also, update Dockerfile with patched `nix.conf`

commit 5ccb44bb
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 2 21:05:47 2025 +0200

    [test] fix calling of nix flakes

commit 1adc512e
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 2 19:42:29 2025 +0200

    [nix] move corenlp to separate flake in core-nix repo

    #483

Resolve "[Node Terms] On multiple Map terms, if the first term is already a map term, the count of the multiple map term is to zero"

Closes #471

See merge request !414

Ref #488

[BREAKING] refactoring of fc_url

Closes #465

See merge request !405

Forest of trees: restore hierarchical grouping of terms

Closes #313

See merge request !424

Generalise fully 'GeneralisedNgramsTree' and add more commentary.

[sqlite] improve performance of sqlite generation by proper PRAGMA

See merge request !431

Also, force WAL checkpoint at the end, otherwise the DB might be incomplete.

This commit generalises the API we have seen for Ngrams and
NgramsElement to Ngrams and NgramsRepoElement, making it suitable for
the NodeStory manipulations.

Furthermore, we use zippers to efficiently traverse forests.

This paves the way for a more disciplined way of handling forests of
ngrams.

Revert "Merge branch 'adinapoli/bump-process' into 'dev'"

See merge request !427

This reverts merge request !426

Update process library to 1.6.26.1

See merge request !426

It turns out that we don't need to call `pruneForest` inside
`searchtableNgrams`. After all, we are just displaying information that
should be correct in the database from the get-go, so why we would need
any of that?

It turns out that the fix for #313 to support duplicated ngrams during
importing broke hierarchical grouping.

I have just temporarily commented out the code and I need to find a fix,
better also writing a test to ensure that grouping will still work in the
future.

This function allows us to keep only the roots, and discard the
redundant children after building a 'Forest'.

I think we can use the NgramsTree and NgramsForest types to our
advantage for the 'searchTableNgrams' & co, so I have revamped that
module to put it to good use.

This commit changes the implementation of filterNgramsNodes to not
filter too aggressively nodes that are present in a path.

This causes a test failure that needs to be investigated.

Also, fix README since we merged tasty/hspec tests recently.

[openalex] make search act similar to the one on openalex web

See merge request !425

Port all the tasty specs to hspec

See merge request !423