- Re-enable orphan warnings that were manually disabled in many modules
- Remove non-Haskell files that were just sitting in the source tree
- Remove modules that were not called from anywhere
- Remove unused dependencies

This is not exhaustive by any means. In particular, some more weeding out
can be achieved by looking at individual functions and even branches of
functions. Weeder can help with that.

This commit refactors the codebase to add a new function called
`addDocumentsToHyperCorpus` which generalises the common pattern of
calling `insertMasterDocs` and later adding the documents via the DB
`Doc` functions.

It also "lowers" some functions to run into a plain `DBCmd`.