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  • #316

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Opened Feb 29, 2024 by david Chavalarias@davidchavalarias
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Failed to replicate simple phylomemy

in 0.0.6.9.9.9.6.3 @anoe, @AlfredoDiNapoli @AlfredoDiNapoli : I tried to replicate the very simple phylomemy of Lobbé, Quentin, David Chavalarias, Alexandre Delanoë, Gabriel Ferrand, Sarah Cohen-Boulakia, Philippe Ravaud, et Isabelle Boutron. 2022. « Toward an Observatory of the Evolution of Clinical Trials through Phylomemy Reconstruction: The COVID-19 Vaccines Example ». Journal of Clinical Epidemiology, mai. https://doi.org/10.1016/j.jclinepi.2022.05.004.

image

And found the following issues :

  • the one generated on FIS (with threshold 1 on size and support) is very different from the one generated by the script
  • The one generated on the MaxClique makes the page crash

All the data for replication are in a team on Dev "clinical trials DEBUG".

I think this is a good case study. The major pb here is that the date format is in the form of 1, 2, .... 15 (which are the weeks), instead of proper date. So maybe it is just a pb of date formatming but still, it could be nice that the phylo accept such ordered format.

Edited Feb 29, 2024 by david Chavalarias
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Reference: gargantext/haskell-gargantext#316