• Alexandre Delanoë's avatar
    [FIX] Graph of Order 2 A or 2 B ? Here is the fix of the Order 2B to replace · b85cbefa
    Alexandre Delanoë authored
    the 2A, which is my recommendation.
    
    For some reasons that should be better analyzed, during the computation
    of the Distributional similarity using Accelerate some parts of the
    matrix are are below 1 (see the line modified by this commit). As a
    consequence the log of such value below 1 gives a negative value that is
    breaking the whole similarity computation: the matrix has negative and
    non negative values and is becoming inconsistent.
    
    The main fix consists in managing the values below 1 in order to get a
    non negative matrix.
    
    The Order 2A fixes the issue by adding 1 on each cell of the matrix.
    The Order 2B fixes the issue by removing values below 1 only.
    
    According to the qualitative tests I made the Graph results of order 2B
    is better than the results of order 2A. Filtering seems better than
    forcing using all data where some seems to be not "representative" enough.
    b85cbefa
Name
Last commit
Last update
bench Loading commit data...
bench-data/phylo Loading commit data...
bin Loading commit data...
devops Loading commit data...
docs Loading commit data...
ekg-assets Loading commit data...
nix Loading commit data...
src Loading commit data...
src-doctest Loading commit data...
test Loading commit data...
test-data Loading commit data...
.clippy.dhall Loading commit data...
.envrc Loading commit data...
.gitignore Loading commit data...
.gitlab-ci.yml Loading commit data...
CHANGELOG.md Loading commit data...
CODE_OF_CONDUCT.md Loading commit data...
CONTRIBUTING.md Loading commit data...
DEVELOPER_GUIDELINES.md Loading commit data...
LICENSE Loading commit data...
README.md Loading commit data...
cabal.project Loading commit data...
cabal.project.freeze Loading commit data...
gargantext-cors-settings.toml Loading commit data...
gargantext.cabal Loading commit data...
gargantext.ini_toModify Loading commit data...
run Loading commit data...
server Loading commit data...
shell.nix Loading commit data...
stack.yaml Loading commit data...
start Loading commit data...
weeder.dhall Loading commit data...