Merge branch 'dev' into 234-dev-ngrams-score

.envrc

+use nix

.gitignore

+# Gauge - metadata dir
+.gauge
+
+# Gauge - log files dir
+logs
+
+# Gauge - reports dir
+reports
+
+# Gauge - JavaScript node dependencies
+node_modules
+.DS_Store
+
 /bower_components/
 /node_modules/
 /.cache/
@@ -32,3 +45,4 @@ bundle.js
 /.lesshst
 /dist/js/**/*.map
 /dist/styles/**/*.map
+

.gitlab-ci.yml

+# Thanks to:
+# https://vadosware.io/post/zero-to-continuous-integrated-testing-a-haskell-project-with-gitlab/
+#
+#
+image: nixos/nix:latest
+
+variables:
+  STACK_ROOT: "${CI_PROJECT_DIR}/.stack-root"
+  STACK_OPTS: "--system-ghc"
+
+#before_script:
+  #- apt-get update
+  #- apt-get install make xz-utils
+
+stages:
+  - test
+
+test:
+  cache:
+    # cache per branch name
+    # key: ${CI_COMMIT_REF_SLUG}
+    # paths:
+    #   - .stack-root/
+    #   - .stack-work/
+  script:
+    # find 0.14.2 purescript version here:
+    # https://lazamar.co.uk/nix-versions/
+    - nix-env -i purescript-0.14.2 -f https://github.com/NixOS/nixpkgs/archive/bed08131cd29a85f19716d9351940bdc34834492.tar.gz
+    - nix-env -i git
+    - nix-env -i nodejs
+    - nix-env -i yarn
+    - yarn --skip-builds
+    - nix-shell shell.nix --run test-ps

.yarnrc

+# THIS IS AN AUTOGENERATED FILE. DO NOT EDIT THIS FILE DIRECTLY.
+# yarn lockfile v1
+
+
+lastUpdateCheck 1611671086951

CODE_OF_CONDUCT.md

+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, gender identity and expression, level of experience,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or
+advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting the project team at [sos AT gargantext DOT org]. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. The project team is
+obligated to maintain confidentiality with regard to the reporter of an incident.
+Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
+available at [http://contributor-covenant.org/version/1/4][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/4/

CONTRIBUTING.md

@@ -4,13 +4,12 @@
 
 ### Social contract
 
-1. Use and promote welcoming behavior to respect the [Code of Conduct](https://gitlab.iscpif.fr/humanities/gargantext/blob/master/CODE_OF_CONDUCT.md)
+1. Be nice, welcome and treat others with respect: [Code of Conduct](https://gitlab.iscpif.fr/humanities/gargantext/blob/master/CODE_OF_CONDUCT.md)
 
-2. We are a team as whole: here to help each others
+2. We are a team as whole: here to help each other
   - knowing the unknown is a value but ignoring the unknown is a failure
     - do not ask to ask: just ask
-    - there is no stupid question(s)
-    - there is no unique solution(s)
+    - there are no stupid questions
 
 3. Watch deadlines individually and collectively
   - at 0% of the time of the task, agree on the /estimate of time to fix the issue.
@@ -82,30 +81,38 @@ Main branches are:
 
 ## Technicals
 
+Please configure your editor accordingly (ask for tips if needed or put your tips here)
 
-### Code main guidelines
+### Code guidelines
 
-#### Code Design
+#### Basics
 
-Please configure your editor accordingly (ask for tips if needed or put your tips here)
+Line length:
+
+* Good lines of code are no more than 80 characters long.
+* Acceptable lines of code are no more than 100
+* Bad lines of code are no more than 120.
+
+Whitespace:
+
+* 2 spaces per indentation stop, or more if needed by the compiler
+* Do not use tab characters.
+* Remove trailing whitespace from lines. Includes blank lines.
+
+#### Layout
 
-##### Line length
-* all line length should be < 120 chars
 
-##### Identation
-* 2 spaces or more if needed by the compiler
-    * i.e. Tab character is avoided
-    * avoid trailing spaces, mostly spaces at the end of lines (remove it)
 
 * HTML nodes:
 
 ```
-  div []
-  [ div []
-    [ a [] [...]
-    , a [] [...]
-    ]
-  , div []
+  div {...}
+  [ div {...} [ a {} [...], a {...} [...] ]
+  , div {...}
+  , div
+    { ...
+    , ...
+    }
     [ ...
     , ...
     ]

Dockerfile.dev

@@ -9,6 +9,8 @@ RUN echo "deb https://dl.yarnpkg.com/debian/ stable main" | tee /etc/apt/sources
 RUN apt-get update && apt-get install -y yarn
 RUN curl -L https://github.com/coot/zephyr/releases/download/v0.3.2/Linux.tar.gz | tar zx -C /usr/bin --strip-components=1 zephyr/zephyr
 
+RUN curl -L https://github.com/dhall-lang/dhall-haskell/releases/download/1.38.1/dhall-json-1.7.6-x86_64-linux.tar.bz2 | tar jx -C /usr/bin --strip-components=2 ./bin/dhall-to-json
+
 WORKDIR /opt/app
 EXPOSE 5000/tcp
 CMD ["bash"]
\ No newline at end of file

README.md

-# Gargantext Purescript
+# Gargantext with Purescript (FrontEnd instance)
 
-## About this project
+## About the project
 
-Gargantext is a collaborative web platform for the exploration of sets
-of unstructured documents. It combines tools from natural language
-processing, text-mining, complex networks analysis and interactive data
-visualization to pave the way toward new kinds of interactions with your
-digital corpora.
+GarganText is a collaborative web-decentralized-based macro-service
+platform for the exploration of unstructured texts. It combines tools
+from natural language processing, text-data-mining tricks, complex
+networks analysis algorithms and interactive data visualization tools to
+pave the way toward new kinds of interactions with your digital corpora.
 
-You will not find this software very useful without also running or being
-granted access to a [backend](https://gitlab.iscpif.fr/gargantext/haskell-gargantext).
+This software is free software, developed and offered by the CNRS
+Complex Systems Institute of Paris Île-de-France (ISC-PIF) and its
+partners.
+
+GarganText Project: this repo builds the
+frontend for the backend server built by
+[backend](https://gitlab.iscpif.fr/gargantext/haskell-gargantext).
 
-This software is free software, developed by the CNRS Complex Systems
-Institute of Paris Île-de-France (ISC-PIF) and its partners.
 
 ## Getting set up
 
 There are two approaches to working with the build:
-1. Use our docker setup
+1. Use our Nix or Docker setup
 2. Install our dependencies yourself
 
-The javascript ecosystem kind of assumes if you're on linux, you're
-running on debian or ubuntu. I haven't yet managed to get garg to
-build on alpine linux, for example. If you're on an oddball system, I
-*strongly* recommend you just use the docker setup.
+### With Nix setup
+
+First install [nix](https://nixos.org/guides/install-nix.html): 
+
+```shell
+sh < (curl -L https://nixos.org/nix/install) --daemon
+```
+
+Verify the installation is complete
+```shell
+$ nix-env
+nix-env (Nix) 2.3.12
+```
+
+To build the frontend just do:
+```
+nix-shell --run build
+```
+Just serve dist/index.html with any server and you are ready to be
+connected to any backend.
+
 
-### Docker setup
+### With Docker setup
 
 You will need docker and docker-compose installed.
 
@@ -123,7 +143,8 @@ the docker container.
 
 ### Basic tasks
 
-Now we must install our javascript and purescript dependencies:
+Now we must install our javascript and purescript dependencies:  
+*Note: if you're installing manually you might also need to manually install [psc-package](https://github.com/purescript/psc-package)*
 
 ```shell
 darn install -D && darn install-ps # for docker setup
@@ -190,7 +211,7 @@ yarn css # for manual setup
 <!-- A `purs ide` connection will be available on port 9002 while the -->
 <!-- development server is running. -->
 
-A guide to getting set up with the IDE integration is coming soon, I hope.
+A guide to getting set up with the IDE integration is coming soon.
 
 ### Testing
 
@@ -213,7 +234,7 @@ runtime or `devDependencies` if it is not.
 
 #### Add a purescript dependency?
 
-Add it to `psc-package.json` without the `purescript-` prefix.
+Add it to `spago.dhall` (or run `spago install ...`).
 
 If is not in the package set, you will need to read the next section.
 
@@ -223,20 +244,6 @@ You need to add an entry to the relevant map in
 `packages.dhall`. There are comments in the file explaining how it
 works. It's written in dhall, so you can use comments and such.
 
-You will then need to rebuild the package set:
-
-```shell
-yarn rebuild-set # or darn rebuild-set
-```
-
-#### Upgrade the base package set local is based on to latest?
-
-```shell
-yarn rebase-set && yarn rebuild-set # or darn rebase-set && darn rebuild-set
-```
-
-This will occasionally result in swearing when you go on to build.
-
 ## Theory Introduction
 
 Making sense of out text isn't actually that hard, but it does require
@@ -244,21 +251,23 @@ a little background knowledge to understand.
 
 ### N-grams
 
-N-grams are at the heart of how Gargantext makes sense out of text.
+N-grams in contexts (of texts) are at the heart of how Gargantext makes
+sense out of text.
 
 There are two common meanings in the literature for n-gram:
 - a sequence of `n` characters
 - a sequence of `n` words
 
-Gargantext is focused on words. Here are some example word n-grams;
+Gargantext is focused on words. Here are some example word n-grams
+usually extracted by our Natural Language Process toolkit;
 
 - `coffee` (unigram or 1-gram)
-- `need coffee` (bigram or 2-gram)
-- `one coffee please` (trigram or 3-gram)
-- `here is your coffee` (4-gram)
-- `i need some more coffee` (5-gram)
+- `black coffee` (bigram or 2-gram)
+- `hot black coffee` (trigram or 3-gram)
+- `arabica hot black coffee` (4-gram)
 
-N-grams are matched case insensitively and across whole words. Examples:
+N-grams are matched case insensitively and across whole words removing
+the linked syntax if exists. Examples:
 
 | Text         | N-gram       | Matches              |
 |--------------|--------------|----------------------|
@@ -270,20 +279,23 @@ You may read more about n-grams [on wikipedia](https://en.wikipedia.org/wiki/N-g
 
 <!-- TODO: Discuss punctuation -->
 
-Gargantext allows you to define n-grams interactively in your browser
-and explore the relationships they uncover across a corpus of text.
+Gargantext allows you to define and refine n-grams interactively in your
+browser and explore the relationships they uncover across a corpus of
+text.
 
-Various metrics can be applied to n-grams, the most common of which is
-the number of times an n-gram appears in a document.
+Various metrics can be applied to n-grams, the most common of which
+is the number of times an n-gram appears in a document (occurrences).
+GarganText uses extensively the cooccurrences: times 2 n-grams appear in
+same context of text.
 
 ## Glossary
 
 document
 : One or more texts comprising a single logical document
 field
-: A portion of a document, e.g. `title`, `abstract`, `body`
+: A portion of a document or metadata, e.g. `title`, `abstract`, `body`
 corpus
-: A collection of documents
+: A collection of documents as set (with no repetition)
 n-gram/ngram
 : A word or words to be indexed, consisting of `n` words.
   This technically includes skip-grams, but in the general case
@@ -295,8 +307,10 @@ bigram/2-gram
 trigram/3-gram
 : A three-word n-gram, e.g. `coffee cup holder`
 skip-gram
-: An n-gram where the words are not all adjacent. Not yet supported.
+: An n-gram where the words are not all adjacent. Group 2 different
+n-grams to enable such feature.
 k-skip-n-gram
-: An n-gram where the words are at most distance k from each other.
-
+: An n-gram where the words are at most distance k from each other. This
+feature is used for advanced research in text (not yet supported in
+GarganText)
 

ci-tests/run.sh

+#!/usr/bin/env bash
+set -euo pipefail
+
+yarn
+test-ps

default.nix

+with (import <nixpkgs> {});
+let
+  nodejs-with-packages = with nodePackages; [
+    bower
+    yarn
+  ]; in
+stdenv.mkDerivation rec {
+  name = "env";
+  env = buildEnv {
+    name = name;
+    paths = buildInputs;
+  };
+  buildInputs = [
+    nodejs-with-packages
+    yarn
+    yarn2nix
+  ];
+  builder = builtins.toFile "builder.sh" ''
+    source $stdenv/setup
+    touch $out
+  '';
+}

dist/index.html

@@ -11,7 +11,7 @@
         <style> * {margin: 0; padding: 0; list-style: none;} </style>
     </head>
     <body>
-        <div id="app" class ="container-fluid"></div>
+        <div id="app"></div>
         <div id="portal"></div>
         <script src="bundle.js"></script>
     </body>

dist/styles/sass.css.map

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\ No newline at end of file
+{"version":3,"sourceRoot":"","sources":["../../src/sass/_menu.sass","../../src/sass/_context_menu.sass","../../src/sass/_graph.sass","../../src/sass/_login.sass","../../src/sass/_tree.sass","../../src/sass/abstract/_members.scss","../../src/sass/_code_editor.sass","../../src/sass/_styles.sass","../../src/sass/_range_slider.sass","../../src/sass/_annotation.sass","../../src/sass/_folder_view.sass"],"names":[],"mappings":"AAEA;AAEA;AACA;AACA;AACA;AACA;AAEA;EACE;EACA;EACA;EACA;EAEA;;;AAEF;EACI;EACA;;;AAEJ;EACI;EACA;EACA;EACA;;;AAEJ;EACE;;;AAEF;AACI;EACA;;;AAEJ;AACI;EACA;;;AAGJ;AACA;EACI;;;AAEJ;EACI;EACA;EACA;EACA;;;AAEJ;EACE;EACA;;;AAEF;EACE;;;AAME;EACE;;;AC9DN;EACE;EACA;EACA;EACA;EACA;;;AAEF;EACE;;;AAEF;EACE;EACA;EACA;EACA;EACA;EACA;EACA;;;AAEF;EACE;EACA;EACA;;;AAEF;EACE;;;AClBF;EACE;EACA;EACA;;;AAEF;AAkCE;AACA;AACA;AACA;AACA;AACA;AACA;AACA;;AAxCA;EAZA;EACA;EAEA;EAWE;EACA;EACA;EACA;;AAEA;EACE;EACA;;AAEF;EACE;EACA;;AAGA;EACE;EACA;;AACN;EACE;;AACF;EACE;;AAEF;EApCA;EACA;EAEA;EAmCE;EACA;;AACF;EACE;;AACF;EACE;;AAWF;EAEE;EAEA;EACA;EACA;EAEA;EACA;EACA;;AAEA;EACE;;AAEJ;EACE;;AAEA;EACE;;AAEJ;EACE;EACA;;;AAGF;EACE;EACA;EACA;EACA;EACA;;;ACjFJ;EACE;;AACA;EACE;EACA;;;AAEJ;EACE;;;AAEF;EACE;;;AAEF;EACE;;;AAGF;EACE;;AAEE;EACE;EACA;;AACA;EACE;;;AAIJ;EACE;EACA;EACA;EACA;;;AAKJ;EACE;EACA;EACA;;;AAEJ;EACE;EACA;EACA;EACA;EACA;;AAGE;EACE;;;AAEN;EACE;EACA;EACA;EACA;EACA;;AAGE;EACE;;;AAEN;EACE;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;;AAEA;EACE;EACA;EACA;;;AAEJ;EACE;EACA;;;AAGF;EACE;EACA;EACA;EACA;;AACA;EACE;EACA;;;AAGF;EACE;;;AAEJ;EACI;EACA;;;AAGF;EACE;;;AAEJ;EACE;;;AAEF;EACE;EACA;;;AAEF;EACE;EACA;EACA;;;AAEF;EACE;EACA;;;AAEF;EACE;;;AC1GF;EACE;;;AAGA;EACE;EACA;EACA;;AAEA;EACE;EACA;;AAGA;EACE;;AACF;EACE;;AAEJ;EACE;EACA;EACA;EACA;EACA;EACA;;AAEA;EACE;;;AAKJ;EACE;;AACA;EACE;EACA;EACA;EACA;;AACF;EACE;EACA;EACA;EACA;EACA;;AACF;EACE;;AACF;EACE;EACA;EACA;EAEA;EACA;EACA;;AAEA;EACE;;AACF;EACE;;AAGN;EACE;;AACF;EACE;;AACA;EACE;EACA;;AAEE;EACE;EACA;;AACF;EACE;EACA;;AAIR;EACE;;AACF;EACE;;AACA;EACE;EACA;;AAEE;EACE;EACA;;AACF;EACE;EACA;;AACF;EACE;EACA;;AAEV;EACE;;AACF;EACE;;AAEE;EACE;;AACF;EACE;;AACN;EACE;;AAEE;EACE;;;AAMN;EACE;;AAEA;EACE;EACA;EACA;EACA;;AAEF;EACE;;AAEA;EACE;EACA;;AAEJ;EACE;EACA;;AAIA;EACE;EACA;;AAEF;EACE;;AAEF;EACE;;;AAIF;EACE;EACA;;AAEF;EACE;;AAEF;EACE;;;AAGR;EACE;;AAEA;EACE;EACA;;ACrJO;EDwJP;;;ACjKO;EDoKP;;;AAKJ;EACE;EACA;EACA;EACA;EACA;EACA;;AAEA;EACE;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;;AAEA;EAEE;EACA;EACA;EACA;EACA;;AAEF;EACE;EACA;EACA;;AAEF;EACE;;;AAEN;EAWE;EAGA;EACA,eAvPkB;;AAyPlB;EACE;EACA;;ACxNO;EDqOP;EACA,MAFW;EAGX;;;AChPO;EDoPP;EACA,OAFW;EAGX;;;AAGA;EACE;;AAEA;EACE;;AAGJ;EACE;;AACF;EACE;;AACF;EACE;;AAGJ;EACE;EACA;;AAEA;EAGE;EACA,WAzSa;EA4Sb;EACA;EACA;;AAEA;EACE;;AAEF;EACE;EACA;EACA;EACA;;AACA;EACE;;AAEN;EACE;EACA;EACA;EACA;;AAEJ;EAEE;EACA;;;AAEJ;EAEE;EACA;;;AAEF;EAGE;EAKA;EACA;EACA;EACA;EAGA;EACA;EACA;EAKA;;AAHA;EACE;;;AAKJ;EAGE;;ACpUS;ED5BP;EACA;;;ACkBO;EDfP;EACA;;;ACuBO;EDuUP;;AAEA;EACE;;;ACnVK;EDsVP;;AAEA;EACE;;;AAON;EAIE;EAEA;EACA;EACA;EACA,QApYmC;EAqYnC;;ACjWS;EDqWP;;;AC9WO;EDiXP;;;AAEJ;EAGE;EAEA;EACA;EACA;EACA,QAvZgC;EAwZhC;;ACnXS;EDuXP;;;AChYO;EDmYP;;;AAKF;EAIE;EACA;;ACpYO;ED5BP;EACA;;;ACkBO;EDfP;EACA;;;AA6ZA;EACE,eA3a+B;;;AAibjC;EACE;;AAEE;EACE;;;AE/ZN;EACE;EACA;EACA;EACA;;AACA;EACE;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;;AACA;EACE;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EApCR;EACA;EACA;EACA;EACA;EACA;EACA;EAlBA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;;AA0CM;EACE;EACA;EACA;EACA;EACA;EA5CR;EACA;EACA;EACA;EACA;EACA;EACA;EAlBA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;EACA;;AAkDE;EACE;EACA;EACA;EACA;EACA;EACA;;AACF;EACE;EACA;EACA;EACA;EACA;;AACA;EACE;EACA;;AACF;EACE;EACA;;AACF;EACE;EACA;;AAGE;EACE;;AAEF;EACE;;AAEV;EACE;;AAEA;EACE;;;AC9FN;EACE;;;AAEF;EACE;EACA;EACA;EACA;EACA;;AAII;EACE;EACA;;AAEJ;EACE;EACA;;AFmBK;EEhBP;;AAEA;EACE;;;AFIK;EEDP;;AAEA;EACE;;;AAGN;EACE;;AACA;EACE;;AACF;EACE;EACA;EACA;;;AAIA;EACE;;AACA;EACE;EACA;;AACF;EACE;;AACA;EACE;;AACJ;EACE;;;AAER;EACE;;;AAEF;EACE;;;AAEF;EACE;;;AAEF;AAGI;EACE;;AACF;EACE;;;AAEN;EACE;EACA;EACA;;;AAIA;EACE;;AACF;EACE;;;AAEJ;EACE;;AACA;EACE;;;AAEJ;EACE;EACA;;;AAGF;EACE;;;AAGF;EACE;;;AAEF;EACE;;AAEA;EACE;;AAEF;EACE;;;AAGJ;EAKE;;AAEA;EACE;;AAIE;EACE;;AACF;EACE;;AAEJ;EAGE;;AAGJ;EACE,SAtBa;EAuBb;;AAGF;EACE;EACA;;AAGF;EACE;EACA;;AAKE;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;AADF;EACE;;;AAKN;EACE;;AF1HO;EE6HL;;;AFtIK;EEyIL;;;AAEJ;EACE,SAZa;;;AC9JjB;EACE;AACA;EACA;;AAEA;EACE;EACA;;AAEA;EACE;EACA;EACA;EACA;EACA;;AAEF;EACE;EACA;EACA;EACA;;AAEF;EACE;EACA;EACA;EACA;EACA;EACA;EACA;EAEA;EAEA;EAEA;;AAEA;EACE;EAEA;EACA;EACA;;;AAGN;EACE;;;ACxBJ;EACE;;AAEA;EANE;EACA;;AAQF;EAbE;EACA;;AAeF;EAhBE;EACA;;AAkBF;EAnBE;EACA;;AAqBF;EA1BE;EACA,kBANyB;;AAkC3B;EA7BE;EACA,kBAPqB;;AAsCvB;EAhCE;EACA,kBAJoB;;;AAuCtB;EApCE;EACA,kBANyB;;AA4C3B;EAvCE;EACA,kBAPqB;;AAgDvB;EA1CE;EACA,kBAJoB;;;ACNxB;EACE;EACA;EACA;EACA;;;AAEF;EACE;EACA;EACA;EACA;;;AAEF;EACE;EACA","file":"sass.css"}
\ No newline at end of file

index.html

@@ -8,10 +8,12 @@
         <link id="bootstrap-css" href="styles/bootstrap-default.css" rel="stylesheet" />
         <link rel="stylesheet" type="text/css" href="styles/highlightjs-solarized-light.css" />
         <link href="styles/sass.css" rel="stylesheet" type="text/css" />
+        <!-- <script type="text/javascript" src="/js/react-bootstrap.min.js"></script> -->
+        <script type="text/javascript" src="/js/react-bootstrap.js"></script>
         <style> * {margin: 0; padding: 0; list-style: none;} </style>
     </head>
     <body>
-        <div id="app" class ="container-fluid"></div>
+        <div id="app"></div>
         <div id="portal"></div>
         <script src="bundle.js"></script>
     </body>

manifest.json

+{
+  "Language": "js",
+  "Plugins": [
+    "html-report"
+  ]
+}
\ No newline at end of file

metadata.json

+{
+  "name": "js",
+  "description": "Gauge template for Javascript and Taiko",
+  "postInstallCmd": "npm install",
+  "postInstallMsg": "Run specifications with \"npm test\" in project root.",
+  "version": "1.0.5"
+}

nix/easy-ps.nix

@@ -5,8 +5,8 @@ import
     pkgs.fetchFromGitHub {
       owner = "justinwoo";
       repo = "easy-purescript-nix";
-      rev = "c8c32741bc09e2ac0a94d5140cf51fa5de809e24";
-      sha256 = "1g1hlybld298kimd1varvwiflpb0k7sdqlmcqha3kswjvy5z4k6k";
+      rev = "d0f592b71b2be222f8dcfb4f4cefb52608bbc1ae";
+      sha256 = "0bq26y836bd1y8657f182wnsl4cdr1xxbykxdgz7xm9shpii48r5";
     }
   ) {
   inherit pkgs;

nix/generate-packages-json.bash

+#!/usr/bin/env bash
+set -e
+
+## You should use the `shell.nix` file in our project, or install dhall-to-json yourself: https://github.com/dhall-lang/dhall-haskell/releases
+dhall-to-json --file packages.dhall --output ./.psc-package/local/.set/packages.json
+echo "generated packages.json"

nix/generate-packages-json.nix

-#!/usr/bin/env nix-shell
-#!nix-shell ./generate-packages-json.nix --run 'exit'
-{ pkgs ? import ./pinned.nix { } }:
-let
-  easy-dhall = import (
-    pkgs.fetchFromGitHub {
-      owner = "justinwoo";
-      repo = "easy-dhall-nix";
-      rev = "90957969850a44481c6e150350c56e8b53b29e1e";
-      sha256 = "1hsmp3cb0k554kh0jlfzpdzx2b8ndyh2gdykmw9hw41haaw16mmi";
-    }
-  ) {
-    inherit pkgs;
-  };
-in
-pkgs.mkShell {
-  buildInputs = [ easy-dhall.dhall-simple easy-dhall.dhall-json-simple ];
-
-  shellHook = ''
-    dhall-to-json --file packages.dhall --output ./.psc-package/local/.set/packages.json
-    echo "generated packages.json"
-  '';
-}

nix/pinned.nix

 import (
   builtins.fetchTarball {
-    url = "https://github.com/NixOS/nixpkgs/archive/20.03.tar.gz";
-    sha256 = "0182ys095dfx02vl2a20j1hz92dx3mfgz2a6fhn31bqlp1wa8hlq";
+    url = "https://github.com/NixOS/nixpkgs/archive/21.05.tar.gz";
+    sha256 = "1ckzhh24mgz6jd1xhfgx0i9mijk6xjqxwsshnvq789xsavrmsc36";
   }
 )

package.json

 {
     "name": "Gargantext",
-    "version": "0.0.2.7.1",
+    "version": "0.0.4.2",
     "scripts": {
-        "rebase-set": "spago package-set-upgrade && spago psc-package-insdhall",
-        "rebuild-set": "spago psc-package-insdhall",
-        "install-ps": "psc-package install",
-        "compile": "pulp build",
-        "build": "pulp browserify -t dist/bundle.js",
-        "css": "sass src/sass/sass.sass:dist/styles/sass.css && sass src/sass/bootstrap/default.sass:dist/styles/bootstrap-default.css && cp node_modules/bootstrap-dark/src/bootstrap-dark.css dist/styles/bootstrap-dark.css && sass src/sass/bootstrap/greyson.scss:dist/styles/bootstrap-greyson.css && sass src/sass/bootstrap/monotony.scss:dist/styles/bootstrap-monotony.css && sass src/sass/bootstrap/darkster.scss:dist/styles/bootstrap-darkster.css  && sass src/sass/bootstrap/herbie.scss:dist/styles/bootstrap-herbie.css",
+        "generate-purs-packages-nix": "./nix/generate-purs-packages.nix",
+        "generate-psc-packages-nix": "./nix/generate-packages-json.bash",
+        "css": "sass src/sass/sass.sass:dist/styles/sass.css && yarn css-themes",
+        "css-themes": "yarn css-default-theme && yarn css-dark-theme && yarn css-darkster-theme && yarn css-greyson-theme && yarn css-herbie-theme && yarn css-monotony-theme",
+        "css-default-theme": "sass src/sass/bootstrap/default.sass:dist/styles/bootstrap-default.css",
+        "css-dark-theme": "cp node_modules/bootstrap-dark/src/bootstrap-dark.css dist/styles/bootstrap-dark.css",
+        "css-darkster-theme": "sass src/sass/bootstrap/darkster.scss:dist/styles/bootstrap-darkster.css",
+        "css-greyson-theme": "sass src/sass/bootstrap/greyson.scss:dist/styles/bootstrap-greyson.css",
+        "css-herbie-theme": "sass src/sass/bootstrap/herbie.scss:dist/styles/bootstrap-herbie.css",
+        "css-monotony-theme": "sass src/sass/bootstrap/monotony.scss:dist/styles/bootstrap-monotony.css",
         "docs": "pulp docs -- --format html",
         "repl": "pulp repl",
         "clean": "rm -Rf output node_modules",
         "clean-js": "rm -Rf node_modules",
         "clean-ps": "rm -Rf output",
-        "test": "pulp test",
         "server": "serve dist",
         "prod": "yarn prod:compile && yarn prod:dce && yarn prod:bundle && yarn prod:pack",
         "prod:compile": "pulp build -- -g corefn",
         "prod:dce": "zephyr -f Main.main",
         "prod:bundle": "pulp browserify --skip-compile -o dce-output -t app.js",
-        "prod:pack": "parcel build index.html -d prod --public-url . --no-source-maps"
+        "prod:pack": "parcel build index.html -d prod --public-url . --no-source-maps",
+        "test-pulp": "pulp test",
+        "test": "gauge run specs/"
     },
     "dependencies": {
+        "@popperjs/core": "^2.9.2",
         "aes-js": "^3.1.1",
         "base-x": "^3.0.2",
-        "bootstrap": "4.4.1",
+        "bootstrap": "^4.6.0",
         "bootstrap-dark": "^1.0.3",
         "create-react-class": "^15.6.3",
-        "echarts": "^4.1.0",
-        "echarts-for-react": "^2.0.14",
+        "echarts": "^5.1.2",
+        "echarts-for-react": "^3.0.1",
         "highlightjs": "^9.16.2",
-        "prop-types": "15.6.2",
-        "react": "^16.10",
+        "immer": "^9.0.5",
+        "prop-types": "^15.6.2",
+        "pullstate": "^1.20.6",
+        "react": "^17.0.2",
         "react-awesome-popover": "^6.1.1",
-        "react-dom": "^16.10",
+        "react-bootstrap": "^1.5.2",
+        "react-dom": "^17.0.2",
         "react-tooltip": "^4.2.8",
-        "secp256k1": "^3.3.0",
+        "secp256k1": "^4.0.2",
         "sigma": "git://github.com/poorscript/sigma.js#garg"
     },
     "devDependencies": {
-        "@babel/core": "^7.12.9",
+        "@babel/core": "^7.15.0",
+        "@babel/preset-env": "^7.15.6",
         "@babel/preset-react": "^7.12.7",
-        "parcel": "^1.12.4",
-        "psc-package": "^4.0.1",
-        "pulp": "^15.0.0",
-        "purescript": "^0.13.8",
-        "purescript-language-server": "^0.12.9",
-        "react-testing-library": "^6.1.2",
-        "sass": "^1.23.7",
-        "serve": "^11.3.1",
-        "spago": "^0.10.0",
-        "vscode-languageserver": "^6.0.0",
-        "xhr2": "^0.1.4"
+        "@getgauge/cli": "^1.4.0",
+        "parcel": "^2.0.0-rc.0",
+        "react-testing-library": "^8.0.1",
+        "sass": "^1.35.2",
+        "serve": "^12.0.0",
+        "taiko": "latest",
+        "vscode-languageserver": "^7.0.0",
+        "xhr2": "^0.2.1"
+    },
+    "optionalDependencies": {
+        "purescript-language-server": "^0.15.2"
     }
 }

psc-package.json

@@ -15,7 +15,7 @@
     "effect",
     "foreign-generic",
     "foreign-object",
-    "generics-rep",
+    "formula",
     "globals",
     "integers",
     "js-timers",
@@ -29,11 +29,14 @@
     "prelude",
     "psci-support",
     "random",
+    "react",
     "reactix",
     "read",
     "record-extra",
     "routing",
     "sequences",
+    "simple-json",
+    "simple-json-generics",
     "simplecrypto",
     "smolder",
     "spec-discovery",
@@ -41,8 +44,9 @@
     "string-parsers",
     "strings",
     "stringutils",
-    "thermite",
+    "toestand",
     "tuples-native",
+    "typisch",
     "uint",
     "uri",
     "versions",

specs/example.spec

+# Logged in user specification
+Tags: login
+
+* Open gargantext
+* User must be logged in as "user1" with password "1resu"
+* Expand tree
+
+## Successful list view
+
+* Open the list view
+
+
+

src/Gargantext/Classes.purs

+module Gargantext.Classes where
+
+textCenter = "text-center"
+
+formControl = "formControl"

src/Gargantext/Components/AutoUpdate.purs

@@ -13,7 +13,7 @@ import Reactix.DOM.HTML as H
 import Gargantext.Prelude
 import Gargantext.Utils.Reactix as R2
 
-thisModule = "Gargantext.Components.AutoUpdate"
+here = R2.here "Gargantext.Components.AutoUpdate"
 
 
 data Action = Update
@@ -49,7 +49,7 @@ autoUpdate :: Record PropsRow -> R.Element
 autoUpdate props = R.createElement autoUpdateCpt props []
 
 autoUpdateCpt :: R.Component PropsRow
-autoUpdateCpt = R.hooksComponentWithModule thisModule "autoUpdate" cpt
+autoUpdateCpt = here.component "autoUpdate" cpt
   where
     cpt { duration, effect } _ = do
       intervalRef <- R.useRef Nothing

src/Gargantext/Components/Charts/Options/Data.purs

 module Gargantext.Components.Charts.Options.Data where
 
+import Gargantext.Components.Charts.Options.Font (TextStyle, Icon, ItemStyle)
+import Gargantext.Components.Charts.Options.Legend (SelectedMode)
+import Gargantext.Types (class Optional)
 import Record.Unsafe (unsafeSet)
 import Unsafe.Coerce (unsafeCoerce)
-import Gargantext.Types (class Optional)
-import Gargantext.Components.Charts.Options.Font (TextStyle, Icon, ItemStyle)
 
 type DataLegend =
   { name :: String
@@ -22,11 +23,15 @@ type RequiredData v o =
   }
 
 type OptionalData =
-  ( name       :: String
-  , symbolSize :: Number
-  , itemStyle  :: ItemStyle
-    -- ^ the style setting about single data point(bubble).
-  , label      :: { show :: Boolean }
+  ( name          :: String
+  , symbolSize    :: Number
+  , itemStyle     :: ItemStyle
+  -- ^ the style setting about single data point(bubble).
+  , label         :: { show :: Boolean }
+  , emphasis      :: { itemStyle :: ItemStyle }
+  , selectedMode  :: SelectedMode
+  , select        :: { itemStyle :: ItemStyle }
+  -- ^ need "selectedMode" to be defined
   )
 
 type DataSerie v = RequiredData v OptionalData