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Commit 84cb0c12 authored by delanoe's avatar delanoe
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Merge remote-tracking branch 'origin/romain-reintegration-graphExplorer' into merge

parents e197ebca b90cad79
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static/lib/graphExplorer.infos.md 0 → 100644
View file @ 84cb0c12
Remarques sur l'intégration de tina
===================================
### Pour info: procédure suivie
Je copie ici les 2 commandes utilisées pour rendre visible comment a été faite la fusion du git de tina dans celui de garg.
Grace à cette méthode, quand on clonera le dépot gargantext, on obtiendra aussi les contenus du dépôt tina dans notre sous-dossier **`static/lib/graphExplorer`**.
**NB**
Il n'est pas nécessaire de refaire cette procédure, dorénavant les fichiers restent là dans le sous-dossier.
1. on a ajouté le dépôt extérieur de graphExplorer comme si c'était une remote normale
```
git remote add dependancy_graphExplorer_garg https://gogs.iscpif.fr/humanities/graphExplorer_garg
```
2. on a lancé la commande `subtree` avec cette remote, pour récupérer le dépôt tina et le placer dans garg dans le dossier indiqué par l'option `prefix`
```
git subtree add --prefix=static/lib/graphExplorer dependancy_graphExplorer_garg master
```
Résultat:
```
# git fetch dependancy_graphExplorer_garg master
# (...)
# Receiving objects: 100% (544/544), 1.72 MiB | 0 bytes/s, done.
# Resolving deltas: 100% (307/307), done.
# From https://gogs.iscpif.fr/humanities/graphExplorer_garg
# * branch master -> FETCH_HEAD
# * [new branch] master -> dependancy_graphExplorer_garg/master
# Added dir 'static/lib/graphExplorer'
```
3. au passage la même commande a aussi créé le commit suivant dans ma branche gargantext
```
# commit b8d7f061f8c236bad390eb968d153fd6729b7434
# Merge: 3bfb707 d256049
# Author: rloth <romain.loth@iscpif.fr>
# Date: Thu Jul 7 16:01:46 2016 +0200
#
# Add 'static/lib/graphExplorer/' from commit 'd256049'
```
(ici le commit *d256049* indique le point où en était le dépôt tina quand il a été copié)
### Utilisation en développement quotidien
Il n'y a plus rien de particulier à faire. Le dossier contient les éléments de tina qui nous sont nécessaires. On peut ignorer l'existence du subtree et travailler normalement, dans ce dossier et ailleurs.
**=> nos opérations de commit / pull quotidiennes ne sont pas affectées**
Il n'est pas non plus nécessaire de prendre en compte la présence ou l'absence de la "remote" (lien extérieur) dans son travail.
### Utilisation avancée: pour propager les résultats entre dépôts
A présent le dépôt tina peut être vu comme une sorte de dépôt upstream circonscrit à un seul sous-dossier **`static/lib/graphExplorer`** !
Mais si des changements interviennent dans le dépôt tina, ils ne seront pas automatiquement intégrés dans sa copie intégrée à garg. Pour opérer des A/R entre les dépôts le plus simple est une 1ère fois d'ajouter le même pointeur extérieur :
```
git remote add dependancy_graphExplorer_garg https://gogs.iscpif.fr/humanities/graphExplorer_garg
```
A partir de là, il devient très simple de faire des opérations push/pull entre dépôts si besoin est..
1. Récupération de mises à jour tina => garg.
Pour intégrer des changements upstream de tina vers garg, il suffit de lancer la commande suivante:
```
git subtree pull --prefix=static/lib/graphExplorer dependancy_graphExplorer_garg master --squash
```
2. Inversement, les changements effectués dans le dossier **`static/lib/graphExplorer`** par les développeurs garg peuvent aussi être poussés du dépôt garg vers le dépôt tina par un subtree push
```
git subtree push --prefix=static/lib/graphExplorer dependancy_graphExplorer_garg master
```
static/lib/graphExplorer/API_CNRS/DirScan_main.php 0 → 100755
View file @ 84cb0c12
<?php
header('Content-Type: application/json');
include("DirectoryScanner.php");
$projectFolderPat = dirname(dirname(getcwd())) . "/";
$instance = new scanTree($projectFolderPat);
$instance->getDirectoryTree("data");
//pr(var_dump($instance->folders));
$output = array();
$output["folders"] = $instance->folders;
$output["gexf_idfolder"] = $instance->gexf_folder;
echo json_encode($output);
// ** Debug Functions: **
function br() {
echo "----------<br>";
}
function pr($msg) {
echo $msg . "<br>";
}
?>
static/lib/graphExplorer/API_CNRS/DirectoryScanner.php 0 → 100755
View file @ 84cb0c12
<?php
class scanTree {
public $root;
public $folders = array();
public $gexf_folder = array();
public function __construct($rootpath = "") {
$this->root = $rootpath;
}
public function getDirectoryTree($dir) {
$folder = array();
$dbs = array();
$gexfs = array();
$dataFolder = $this->root . $dir;
$files = scandir($dataFolder);
foreach ($files as $f) {
if ($f != "." and $f != ".." and $f[strlen($f) - 1] != "~") {
if (is_dir($dataFolder . "/" . $f)) {
//pr("Dir: ".$f);
$subfolder = $f;
$this->getDirectoryTree($dir . "/" . $subfolder);
} else {
//pr("File: ".$f);
if ((strpos($f, '.gexf')))
array_push($gexfs, $f);
if ((strpos($f, '.db')) or (strpos($f, '.sqlite')) or (strpos($f, '.sqlite3')))
array_push($dbs, $f);
if (!$folder[$dir]["gexf"] or !$folder[$dir]["dbs"])
$folder[$dir] = array();
$folder[$dir]["gexf"] = $gexfs;
$folder[$dir]["dbs"] = $dbs;
if ((strpos($f, '.gexf'))) {
$this->gexf_folder[$dir . "/" . $f] = "";
}
}
}
}
if ($folder[$dir]["gexf"]) {
foreach ($folder[$dir]["gexf"] as $g) {
$this->gexf_folder[$dir . "/" . $g] = count($this->folders);
}
}
array_push($this->folders, $folder);
}
}
?>
static/lib/graphExplorer/API_CNRS/clear_favorites.php 0 → 100755
View file @ 84cb0c12
<?php
echo 'toto';
?>
\ No newline at end of file
static/lib/graphExplorer/API_CNRS/default_div.php 0 → 100755
View file @ 84cb0c12
<?php
// default informations
$thedb = $graphdb;
$gexf=$_GET["gexf"];
$max_item_displayed=6;
$type = $_GET["type"];
$TITLE="ISITITLE";
$query = str_replace( '__and__', '&', $_GET["query"] );
$elems = json_decode($query);
$table = "";
$column = "";
$id="";
$twjs="API_CNRS/"; // submod path of TinaWebJS
if($type=="social"){
$table = "ISIAUTHOR";
$column = "data";
$id = "id";
$restriction='';
$factor=10;// factor for normalisation of stars
}
if($type=="semantic"){
$table = $_GET["index"];//"ISItermsfirstindexing";
$column = "data";
$id = "id";
$restriction='';
$factor=10;
}
$restriction='';
$factor=10;
$sql="";
//////////
if (count($elems)==1){// un seul mot est sélectionné, on compte les mots multiples
$sql = 'SELECT count(*),'.$id.'
FROM '.$table.' where (';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
#$querynotparsed=$sql;#####
$sql = substr($sql, 0, -3);
$sql = str_replace( ' & ', '" OR '.$column.'="', $sql );
$sql.=')'.$restriction.'
GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000';
}else{// on compte une seule fois un mot dans un article
$factor=ceil(count($elems)/5); //les scores sont moins haut
$sql='';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
$sql=substr($sql, 0, -3);
$sql='SELECT count(*),id,data FROM (SELECT *
FROM '.$table.' where ('.$sql.')'.$restriction.'
group by id,data) GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000';
}
$wos_ids = array();
$sum=0;
// echo "<br>";
// echo "$sql";
//The final query!
// array of all relevant documents with score
foreach ($base->query($sql) as $row) {
// on pondère le score par le nombre de termes mentionnés par l'article
//$num_rows = $result->numRows();
$wos_ids[$row[$id]] = $row["count(*)"];
$sum = $row["count(*)"] +$sum;
}
// /// nombre de document associés $related
$total_count=0;
$count_max=500;
$number_doc=count($wos_ids);
$count=0;
$all_terms_from_selected_projects=array();// list of terms for the top 6 project selected
// to filter under some conditions
$to_display=true;
$count=0;
foreach ($wos_ids as $id => $score) {
if ($total_count<$count_max) {
// retrieve publication year
if ($to_display){
$total_count+=1;
if ($count<=$max_item_displayed){
$count+=1;
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$external_link="<a href=http://google.com/webhp?#q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=15px src="'.$twjs.'img/google.png"></a>';
$output.="<li title='".$score."'>";
$output.=$external_link.imagestar($score,$factor,$twjs).' ';
$output.='<a href="JavaScript:newPopup(\''.$twjs.'default_doc_details.php?gexf='.urlencode($gexf).'&index='.$table.'&query='.urlencode($query).'&type='.urlencode($_GET["type"]).'&id='.$id.' \')">'.$row['data']." </a> ";
// echo '<a href="JavaScript:newPopup(\''.$twjs.'default_doc_details.php?gexf='.urlencode($gexf).'&index='.$table.'&query='.urlencode($query).'&type='.urlencode($_GET["type"]).'&id='.$id.' \')">'.$row['data']." </a> ";
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=($row['data']).', ';
}
$output = rtrim($output, ", ");
$output.="</li><br>";
}
}
} else{
continue;
}
}
if ($total_count<$count_max){
$related .= $total_count;
}else{
$related .= ">".$count_max;
}
$output .= "</ul>"; #####
// // if (($project_folder=='nci')&&(count($elems)<$max_selection_size)){
// // // for NCI we compare the impact and novelty score making the difference if there are more than 4 terms selected
// // $news='';//new terms
// // $terms_from_selected_projects=array_unique($all_terms_from_selected_projects);
// // if(count($terms_from_selected_projects)>3){
// // $diff=array();
// // foreach ($terms_from_selected_projects as $key => $term) {
// // $sql= "select count(*),ISIterms.id, ISIterms.data from ISIterms join ISIpubdate on (ISIterms.id=ISIpubdate.id AND ISIpubdate.data=2011 AND ISIterms.data='".$term."') group by ISIterms.data";
// // $nov=0;
// // foreach ($corporadb->query($sql) as $row) {
// // $nov=$row['count(*)'];
// // }
// // $sql= "select count(*),ISIterms.id, ISIterms.data from ISIterms join ISIpubdate on (ISIterms.id=ISIpubdate.id AND ISIpubdate.data=2012 AND ISIterms.data='".$term."') group by ISIterms.data";
// // $imp=0;
// // foreach ($corporadb->query($sql) as $row) {
// // $imp=$row['count(*)'];
// // }
// // $diff[$term]=info($nov,$imp); //positive si c'est un term novelty, negatif si c'est un terme impact.
// // //echo $term.'-nov: '.$nov.'- imp:'.$imp.'<br/>';//'-info'.$diff[$term].
// // }
// // if (true){
// // arsort($diff);
// // $res=array_keys($diff);
// // //echo implode(', ', $res);
// // $nov_string='';
// // for ($i=0;$i<$top_displayed;$i++){
// // // on récupère les titres du document qui a le plus for impact
// // $sql="SELECT ISIterms.id,ISIC1_1.data,count(*) from ISIterms,ISIpubdate,ISIC1_1 where ISIterms.data='".$res[$i]."' AND ISIterms.id=ISIpubdate.id AND ISIterms.id=ISIC1_1.id AND ISIpubdate.data='2011' group by ISIterms.id ORDER BY RANDOM() limit 1";
// // //on récupère les id associés.
// // foreach ($corporadb->query($sql) as $row){
// // $sql2='SELECT ISIpubdate.id,ISIC1_1.data from ISIpubdate,ISIC1_1 where ISIC1_1.data="'.$row['data'].'" AND ISIpubdate.id=ISIC1_1.id AND ISIpubdate.data="2013" limit 1';
// // //echo $sql2;
// // foreach ($corporadb->query($sql2) as $row2){
// // $nov_string.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($graphdb).'&gexf='.urlencode($gexf).'&query='.urlencode('["'.$res[$i].'"]').'&type='.urlencode($_GET["type"]).'&id='.$row2['id'].' \')">'.$res[$i]."</a>, ";
// // }
// // }
// // }
// // $news.='<br/><b><font color="#FF0066">Top '.$top_displayed.' Novelty related terms </font></b>'.$nov_string.'<br/>';
// // asort($diff);
// // $res=array_keys($diff);
// // $res_string='';
// // for ($i=0;$i<$top_displayed;$i++){
// // // on récupère les titres du document qui a le plus for impact
// // $sql="SELECT ISIterms.id,ISIC1_1.data,count(*) from ISIterms,ISIpubdate,ISIC1_1 where ISIterms.data='".$res[$i]."' AND ISIterms.id=ISIpubdate.id AND ISIterms.id=ISIC1_1.id AND ISIpubdate.data='2012' group by ISIterms.id ORDER BY RANDOM()limit 1";
// // //on récupère les id associés.
// // foreach ($corporadb->query($sql) as $row){
// // $sql2='SELECT ISIpubdate.id,ISIC1_1.data from ISIpubdate,ISIC1_1 where ISIC1_1.data="'.$row['data'].'" AND ISIpubdate.id=ISIC1_1.id AND ISIpubdate.data="2013" limit 1';
// // //echo $sql2;
// // foreach ($corporadb->query($sql2) as $row2){
// // $res_string.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($graphdb).'&gexf='.urlencode($gexf).'&query='.urlencode('["'.$res[$i].'"]').'&type='.urlencode($_GET["type"]).'&id='.$row2['id'].' \')">'.$res[$i]."</a>, ";
// // }
// // }
// // }
// // $news.='<br/><b><font color="#CF5300">Top '.$top_displayed.' Impact related terms: </font></b>'.$res_string.'<br/>';
// // }
// // }
// // }
// // display the most occuring terms when only one is selected.
// //elseif (count($elems)==1) {// on affiche les voisins
// // $terms_array=array();
// // $id_sql='SELECT ISIterms.id FROM ISIterms where ISIterms.data="'.$elems[0].'" group by id';
// // foreach ($base->query($id_sql) as $row_id) {
// // $sql2='SELECT ISIterms.data FROM ISIterms where ISIterms.id='.$row_id['id'];
// // foreach ($base->query($sql2) as $row_terms) {
// // if ($terms_array[$row_terms['data']]>0){
// // $terms_array[$row_terms['data']]=$terms_array[$row_terms['data']]+1;
// // }else{
// // $terms_array[$row_terms['data']]=1;
// // }
// // }
// // }
// // natsort($terms_array);
// // $terms_list=array_keys(array_slice($terms_array,-11,-1));
// // foreach ($terms_list as $first_term) {
// // $related_terms.=$first_term.', ';
// // }
// // $news.='<br/><b><font color="#CF5300">Related terms: </font></b>'.$related_terms.'<br/>';
// //}
// calculate binomial coefficient
function binomial_coeff($n, $k) {
$j = $res = 1;
if($k < 0 || $k > $n)
return 0;
if(($n - $k) < $k)
$k = $n - $k;
while($j <= $k) {
$res *= $n--;
$res /= $j++;
}
return $res;
}
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="'.$twjs.'img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="'.$twjs.'img/stargrey.gif" border="0">';
}
return $star_image;
}
if($max_item_displayed>$related) $max_item_displayed=$related;
echo $news.'<br/><h4><font color="#0000FF"> Full text of top '.$max_item_displayed.'/'.$related.' related publications:</font></h4>'.$output;
//pt - 301 ; 15.30
?>
static/lib/graphExplorer/API_CNRS/default_doc_details.php 0 → 100755
View file @ 84cb0c12
<?php
include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" .$db);
$query = str_replace( '__and__', '&', $_GET["query"] );
$terms_of_query = json_decode($query);
// echo "mainpath: ".$mainpath."<br>";
// echo "thedb: ".$db."<br>";
// echo "thequery: ".var_dump($terms_of_query);
echo '
<html>
<head>
<meta charset="utf-8" />
<title>Document details</title>
<link rel="stylesheet" href="js/jquery-ui.css" />
<script src="js/jquery-1.9.1.js"></script>
<script src="js/jquery-ui.js"></script>
<script>
$(function() {
$( "#tabs" ).tabs({
collapsible: true
});
});
</script>
</head>
<body>
<div id="tabs">
<ul>
<li><a href="#tabs-1">Selected Document</a></li>
<li><a href="full_doc_list.php?'.'gexf='.urlencode($gexf).'&query='.urlencode($_GET["query"]).'&type='.urlencode($_GET["type"]).'">Full list</a></li>';
echo '</ul>';
echo '<div id="tabs-1">';
$id=$_GET["id"];
// //$elems = json_decode($query);
// $sql = 'SELECT data FROM ISIkeyword WHERE id='.$id;
// foreach ($base->query($sql) as $row) {
// $country=$CC[strtoupper($row['data'])];
// }
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$output.='<h2>'.$row['data'].'</h2>';
$find.="<br/><a href=http://google.com/webhp?q=".urlencode('"'.$row['data'].'"')." target='blank'>[ Search on the web ] </a>";
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<i>'.($row['data']).'</i>, ';
}
$output = rtrim($output, ", ");
// // // get the company
// // $sql = 'SELECT data FROM ISIC1_1 WHERE id='.$id;
// // foreach ($base->query($sql) as $row) {
// //$output.=' - '.substr($row['data'],3,strlen( $row['data'])).' ';
// //}
// get the date
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=' ('.$row['data'].') ';
}
// // get the country
// $sql = 'SELECT data FROM ISIkeyword WHERE id='.$id;
// foreach ($base->query($sql) as $row) {
// $country=$CC[strtoupper($row['data'])];
// $output.=strtoupper($country).'<br/> ';
// }
// // get the date
if(strpos($_GET["index"],'terms') ) $sql = 'SELECT data FROM '.$_GET["index"].' WHERE id='.$id;
else $sql = 'SELECT data FROM ISItermsListV1 WHERE id='.$id;
$output.='<br/><b>Keywords: </b>';
$terms=array();
foreach ($base->query($sql) as $row) {
$terms[]=$row['data'];
}
natsort($terms);
$terms=array_unique($terms); // liste des termes de l'article
$keywords='';
foreach ($terms as $key => $value) {
$keywords.=$value.', ';
}
foreach ($terms_of_query as $key => $value) {
$keywords=str_replace($value,'<font color="green"><b> '.$value.'</b></font>',$keywords);
}
foreach (array_diff($terms,$terms_of_query) as $key => $value) {
$keywords=str_ireplace($value,'<font color="#800000"> '.$value.'</font>',$keywords);
}
$output.='<p align="justify">'.$keywords.'</p>';
// // get the website
$sql = 'SELECT data FROM ISISO WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<b>Journal: </b>'.$row['data'].'<br/> ';
}
$sql = 'SELECT data FROM ISIABSTRACT WHERE id='.$id;
// echo $output."<br>";
$abs="";
foreach ($base->query($sql) as $row) {
$abs.=". ".$row['data'];
}
$abs=str_replace('ISSUES:' ,'<br/><br/><b>Issues:</b>',$abs);
$abs=str_replace('INTENDED IMPACT:' ,'<br/><br/><b>Intended impact:</b>',$abs);
$abs=str_replace('IMPACT:' ,'<br/><br/><b>Impact:</b>',$abs);
$abs=str_replace('NOVELTY:' ,'<br/><br/><b>Novelty:</b>',$abs);
$abs=str_replace('BOLD INNOVATION:' ,'<br/><br/><b>Bold innovation:</b>',$abs);
$abs=str_replace('SOCIAL PROBLEM:' ,'<br/><br/><b>Social problem:</b>',$abs);
// solving encoding pb
$abs=str_replace('―', ' ', $abs);
$abs=str_replace('‟‟', ' ', $abs);
$abs=str_replace('„‟', ' ', $abs);
$abs=str_replace('_x000D_', ' ', $abs);
$abs=str_replace('•', ' ', $abs);
$abs=str_replace('’', '\'', $abs);
foreach ($terms_of_query as $key => $value) {
$abs=str_ireplace($value,'<font color="green"><b> '.$value.'</b></font>',$abs);
}
foreach (array_diff($terms,$terms_of_query) as $key => $value) {
$abs=str_ireplace($value,'<font color="#800000"> '.$value.'</font>',$abs);
}
$output.='<br/><p align="justify"><b>Abstract : </b><i>'.$abs.' </i></p>';
$output.="<br>";
echo $output.$find;
echo '</div>';
//echo '<div id="tabs-2">
// <p><strong>Click this tab again to close the content pane.</strong></p>
// <p>Morbi tincidunt, dui sit amet facilisis feugiat, odio metus gravida ante, ut pharetra massa metus id nunc. Duis scelerisque molestie turpis. Sed fringilla, massa eget luctus malesuada, metus eros molestie lectus, ut tempus eros massa ut dolor. Aenean aliquet fringilla sem. Suspendisse sed ligula in ligula suscipit aliquam. Praesent in eros vestibulum mi adipiscing adipiscing. Morbi facilisis. Curabitur ornare consequat nunc. Aenean vel metus. Ut posuere viverra nulla. Aliquam erat volutpat. Pellentesque convallis. Maecenas feugiat, tellus pellentesque pretium posuere, felis lorem euismod felis, eu ornare leo nisi vel felis. Mauris consectetur tortor et purus.</p>
// </div>';
echo '</div>';
function pt($string){
// juste pour afficher avec retour à la ligne
echo $string."<br/>";
}
function pta($array){
print_r($array);
echo '<br/>';
}
?>
static/lib/graphExplorer/API_CNRS/default_doc_details2.php 0 → 100755
View file @ 84cb0c12
<?php
include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" ."data/terrorism/data.db");
$query = str_replace( '__and__', '&', $_GET["query"] );
$terms_of_query = json_decode($query);
// echo "mainpath: ".$mainpath."<br>";
// echo "thedb: ".$db."<br>";
// echo "thequery: ".var_dump($terms_of_query);
echo '
<html>
<head>
<meta charset="utf-8" />
<title>Document details</title>
<link rel="stylesheet" href="js/jquery-ui.css" />
<script src="js/jquery-1.9.1.js"></script>
<script src="js/jquery-ui.js"></script>
<script>
$(function() {
$( "#tabs" ).tabs({
collapsible: true
});
});
</script>
</head>
<body>
<div id="tabs">
<ul>
<li><a href="#tabs-1">Selected Document</a></li>
<li><a href="full_doc_list2.php?'.'gexf='.urlencode($gexf).'&query='.urlencode($_GET["query"]).'&type='.urlencode($_GET["type"]).'">Full list</a></li>';
echo '</ul>';
echo '<div id="tabs-1">';
$id=$_GET["id"];
// //$elems = json_decode($query);
// $sql = 'SELECT data FROM ISIkeyword WHERE id='.$id;
// foreach ($base->query($sql) as $row) {
// $country=$CC[strtoupper($row['data'])];
// }
$sql = 'SELECT data FROM ID WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$output.='<h2>Project Identification: '.$row['data'].'</h2>';
}
$sql = 'SELECT data FROM TI WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$output.='<h2>'.$row['data'].'</h2>';
$find.="<br/><a href=http://google.com/webhp?q=".urlencode('"'.$row['data'].'"')." target='blank'>[ Search on the web ] </a>";
}
// get the authors
$sql = 'SELECT data FROM PI WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<i>'.($row['data']).'</i>, ';
}
$output = rtrim($output, ", ");
// // // get the company
// // $sql = 'SELECT data FROM ISIC1_1 WHERE id='.$id;
// // foreach ($base->query($sql) as $row) {
// //$output.=' - '.substr($row['data'],3,strlen( $row['data'])).' ';
// //}
$output.=' (2014) ';
// // get the country
// $sql = 'SELECT data FROM ISIkeyword WHERE id='.$id;
// foreach ($base->query($sql) as $row) {
// $country=$CC[strtoupper($row['data'])];
// $output.=strtoupper($country).'<br/> ';
// }
// // get the date
// $sql = 'SELECT data FROM '."ISItermsBigWL".' WHERE id='.$id;
$sql = 'SELECT data FROM ISItermsfirstindexing WHERE id='.$id;
$output.='<br/><b>Keywords: </b>';
$terms=array();
foreach ($base->query($sql) as $row) {
$terms[]=$row['data'];
}
natsort($terms);
$terms=array_unique($terms); // liste des termes de l'article
$keywords='';
foreach ($terms as $key => $value) {
$keywords.=$value.', ';
}
foreach ($terms_of_query as $key => $value) {
$keywords=str_replace($value,'<font color="green"><b> '.$value.'</b></font>',$keywords);
}
foreach (array_diff($terms,$terms_of_query) as $key => $value) {
$keywords=str_ireplace($value,'<font color="#800000"> '.$value.'</font>',$keywords);
}
$output.='<p align="justify">'.$keywords.'</p>';
// // get the website
$sql = 'SELECT data FROM AG1 WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<b>Agency: </b>'.$row['data'].'<br/> ';
}
$sql = 'SELECT data FROM ABS WHERE id='.$id;
// echo $output."<br>";
$abs="";
foreach ($base->query($sql) as $row) {
$abs.=". ".$row['data'];
}
$abs=str_replace('ISSUES:' ,'<br/><br/><b>Issues:</b>',$abs);
$abs=str_replace('INTENDED IMPACT:' ,'<br/><br/><b>Intended impact:</b>',$abs);
$abs=str_replace('IMPACT:' ,'<br/><br/><b>Impact:</b>',$abs);
$abs=str_replace('NOVELTY:' ,'<br/><br/><b>Novelty:</b>',$abs);
$abs=str_replace('BOLD INNOVATION:' ,'<br/><br/><b>Bold innovation:</b>',$abs);
$abs=str_replace('SOCIAL PROBLEM:' ,'<br/><br/><b>Social problem:</b>',$abs);
// solving encoding pb
$abs=str_replace('―', ' ', $abs);
$abs=str_replace('‟‟', ' ', $abs);
$abs=str_replace('„‟', ' ', $abs);
$abs=str_replace('_x000D_', ' ', $abs);
$abs=str_replace('•', ' ', $abs);
$abs=str_replace('’', '\'', $abs);
foreach ($terms_of_query as $key => $value) {
$abs=str_ireplace($value,'<font color="green"><b> '.$value.'</b></font>',$abs);
}
foreach (array_diff($terms,$terms_of_query) as $key => $value) {
$abs=str_ireplace($value,'<font color="#800000"> '.$value.'</font>',$abs);
}
$output.='<br/><p align="justify"><b>Abstract : </b><i>'.$abs.' </i></p>';
$output.="<br>";
echo $output.$find;
echo '</div>';
//echo '<div id="tabs-2">
// <p><strong>Click this tab again to close the content pane.</strong></p>
// <p>Morbi tincidunt, dui sit amet facilisis feugiat, odio metus gravida ante, ut pharetra massa metus id nunc. Duis scelerisque molestie turpis. Sed fringilla, massa eget luctus malesuada, metus eros molestie lectus, ut tempus eros massa ut dolor. Aenean aliquet fringilla sem. Suspendisse sed ligula in ligula suscipit aliquam. Praesent in eros vestibulum mi adipiscing adipiscing. Morbi facilisis. Curabitur ornare consequat nunc. Aenean vel metus. Ut posuere viverra nulla. Aliquam erat volutpat. Pellentesque convallis. Maecenas feugiat, tellus pellentesque pretium posuere, felis lorem euismod felis, eu ornare leo nisi vel felis. Mauris consectetur tortor et purus.</p>
// </div>';
echo '</div>';
function pt($string){
// juste pour afficher avec retour à la ligne
echo $string."<br/>";
}
function pta($array){
print_r($array);
echo '<br/>';
}
?>
static/lib/graphExplorer/API_CNRS/favorite.php 0 → 100755
View file @ 84cb0c12
<?php
$db= $_GET["db"];//I receive the specific database as string!
$terms_of_query=json_decode($_GET["query"]);
include('parameters_details.php');
$base = new PDO("sqlite:" .$mainpath.$db);
$query=$_GET["query"];
$gexf=$_GET["gexf"];
$max_tag_could_size=15;
$output = "<ul>"; // string sent to the javascript for display
$type = $_GET["type"];
$sql='SELECT id from favorites';
$wos_ids=array(); // favorite list
$num_favorite=0;
$count=0;
foreach ($base->query($sql) as $row){
$wos_ids[$row['id']] = 1;
$num_favorite+=1;
}
$favorite_keywords=array();
foreach ($wos_ids as $id => $score) {
if ($count<1000){
// retrieve publication year
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$pubdate=$row['data'];
}
$count+=1;
$output.="<li >";
$sql = 'SELECT data FROM ISItermsListV1 WHERE id='.$id;
foreach ($base->query($sql) as $row) {
if (array_key_exists($row['data'], $favorite_keywords)){
$favorite_keywords[$row['data']]=$favorite_keywords[$row['data']]+1;
}else{
$favorite_keywords[$row['data']]=1;
}
}
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<a href="default_doc_details.php?db='.urlencode($db).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> ";
//this should be the command:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($datadb).'&id='.$id.' \')">'.$row['data']." </a> ";
//the old one:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?id='.$id.' \')">'.$row['data']." </a> ";
$external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="img/gs.png"></a>';
//$output.='<a href="JavaScript:newPopup(''php/doc_details.php?id='.$id.''')"> Link</a>';
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=strtoupper($row['data']).', ';
}
if($project_folder!='nci'){
$output.='('.$pubdate.') ';
}else {
$output.='(2013) ';
}
// get the country
$sql = 'SELECT data FROM ISIkeyword WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$country=$CC[strtoupper($row['data'])];
$output.=strtoupper($country).' ';
}
//<a href="JavaScript:newPopup('http://www.quackit.com/html/html_help.cfm');">Open a popup window</a>'
$output.=$external_link."</li><br>";
}else{
continue;
}
}
arsort($favorite_keywords);
$tag_coud_size=0;
$tag_could='';
foreach ($favorite_keywords as $key => $value) {
if ($tag_coud_size<$max_tag_could_size){
$tag_coud_size+=1;
$tag_could.='<font size="'.(3+log($value)).'">'.$key.', </font>';
}else{
continue;
} # code...
}
$output= '<h3>'.$num_favorite.' favorite items </h3>'.$tag_could.'<br/>'.$output;
echo $output;
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="img/stargrey.gif" border="0">';
}
return $star_image;
}
?>
static/lib/graphExplorer/API_CNRS/full_doc_list.php 0 → 100755
View file @ 84cb0c12
<?php
include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" .$db);
$output = "<ul>"; // string sent to the javascript for display
#http://localhost/branch_ademe/php/test.php?type=social&query=[%22marwah,%20m%22]
$type = $_GET["type"];
$query = str_replace( '__and__', '&', $_GET["query"] );
$terms_of_query=json_decode($_GET["query"]);
$elems = json_decode($query);
// nombre d'item dans les tables
$sql='SELECT COUNT(*) FROM ISIABSTRACT';
foreach ($base->query($sql) as $row) {
$table_size=$row['COUNT(*)'];
}
$table = "";
$column = "";
$id="";
$twjs="API_CNRS/"; // submod path of TinaWebJS
if($type=="social"){
$table = "ISIAUTHOR";
$column = "data";
$id = "id";
$restriction='';
$factor=10;// factor for normalisation of stars
}
if($type=="semantic"){
$table = "ISItermsListV1";
$column = "data";
$id = "id";
$restriction='';
$factor=10;
}
$sql = 'SELECT count(*),'.$id.'
FROM '.$table.' where (';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
#$querynotparsed=$sql;#####
$sql = substr($sql, 0, -3);
$sql = str_replace( ' & ', '" OR '.$column.'="', $sql );
$sql.=')'.$restriction.'
GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000';
#$queryparsed=$sql;#####
$wos_ids = array();
$sum=0;
//The final query!
// array of all relevant documents with score
foreach ($base->query($sql) as $row) {
// on pondère le score par le nombre de termes mentionnés par l'article
//$num_rows = $result->numRows();
$wos_ids[$row[$id]] = $row["count(*)"];
$sum = $row["count(*)"] +$sum;
}
//arsort($wos_ids);
$number_doc=ceil(count($wos_ids)/3);
$count=0;
foreach ($wos_ids as $id => $score) {
if ($count<1000){
// retrieve publication year
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$pubdate=$row['data'];
}
// to filter under some conditions
$to_display=true;
if ($to_display){
$count+=1;
$output.="<li title='".$score."'>";
$output.=imagestar($score,$factor,$twjs).' ';
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id." group by data";
foreach ($base->query($sql) as $row) {
$output.='<a href="default_doc_details.php?gexf='.urlencode($gexf).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> ";
//this should be the command:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($datadb).'&id='.$id.' \')">'.$row['data']." </a> ";
//the old one:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?id='.$id.' \')">'.$row['data']." </a> ";
$external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="img/gs.png"></a>';
//$output.='<a href="JavaScript:newPopup(''php/doc_details.php?id='.$id.''')"> Link</a>';
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=strtoupper($row['data']).', ';
}
//<a href="JavaScript:newPopup('http://www.quackit.com/html/html_help.cfm');">Open a popup window</a>'
$output.=$external_link."</li><br>";
}
}else{
continue;
}
}
$output= '<h3>'.$count.' items related to: '.implode(' OR ', $elems).'</h3>'.$output;
echo $output;
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="img/stargrey.gif" border="0">';
}
return $star_image;
}
?>
static/lib/graphExplorer/API_CNRS/full_doc_list2.php 0 → 100755
View file @ 84cb0c12
<?php
include('parameters_details.php');
$db = $gexf_db[$gexf];
$base = new PDO("sqlite:../" ."data/terrorism/data.db");
echo "sqlite:../" ."data/terrorism/data.db";
$output = "<ul>"; // string sent to the javascript for display
#http://localhost/branch_ademe/php/test.php?type=social&query=[%22marwah,%20m%22]
$type = $_GET["type"];
$query = str_replace( '__and__', '&', $_GET["query"] );
$terms_of_query=json_decode($_GET["query"]);
$elems = json_decode($query);
// nombre d'item dans les tables
$sql='SELECT COUNT(*) FROM ISIABSTRACT';
foreach ($base->query($sql) as $row) {
$table_size=$row['COUNT(*)'];
}
$table = "";
$column = "";
$id="";
$twjs="pasteurapi/"; // submod path of TinaWebJS
if($type=="social"){
$table = "ISIAUTHOR";
$column = "data";
$id = "id";
$restriction='';
$factor=10;// factor for normalisation of stars
}
if($type=="semantic"){
$table = "ISItermsListV1";
$column = "data";
$id = "id";
$restriction='';
$factor=10;
}
$sql = 'SELECT count(*),'.$id.'
FROM '.$table.' where (';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
#$querynotparsed=$sql;#####
$sql = substr($sql, 0, -3);
$sql = str_replace( ' & ', '" OR '.$column.'="', $sql );
$sql.=')'.$restriction.'
GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000';
#$queryparsed=$sql;#####
$wos_ids = array();
$sum=0;
//The final query!
// array of all relevant documents with score
foreach ($base->query($sql) as $row) {
// on pondère le score par le nombre de termes mentionnés par l'article
//$num_rows = $result->numRows();
$wos_ids[$row[$id]] = $row["count(*)"];
$sum = $row["count(*)"] +$sum;
}
//arsort($wos_ids);
$number_doc=ceil(count($wos_ids)/3);
$count=0;
foreach ($wos_ids as $id => $score) {
if ($count<1000){
// retrieve publication year
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$pubdate="2014";
}
// to filter under some conditions
$to_display=true;
if ($to_display){
$count+=1;
$output.="<li title='".$score."'>";
$output.=imagestar($score,$factor,$twjs).' ';
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id." group by data";
foreach ($base->query($sql) as $row) {
$output.='<a href="default_doc_details2.php?gexf='.urlencode($gexf).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> ";
//this should be the command:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($datadb).'&id='.$id.' \')">'.$row['data']." </a> ";
//the old one:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?id='.$id.' \')">'.$row['data']." </a> ";
$external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="img/gs.png"></a>';
//$output.='<a href="JavaScript:newPopup(''php/doc_details.php?id='.$id.''')"> Link</a>';
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=strtoupper($row['data']).', ';
}
//<a href="JavaScript:newPopup('http://www.quackit.com/html/html_help.cfm');">Open a popup window</a>'
$output.=$external_link."</li><br>";
}
}else{
continue;
}
}
$output= '<h3>'.$count.' items related to: '.implode(' OR ', $elems).'</h3>'.$output;
echo $output;
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="img/stargrey.gif" border="0">';
}
return $star_image;
}
?>
static/lib/graphExplorer/API_CNRS/full_doc_list_tidf.php 0 → 100755
View file @ 84cb0c12
<?php
include('parameters_details.php');
$db= $_GET["db"];//I receive the specific database as string!
$query=$_GET["query"];
$gexf=$_GET["gexf"];
$base = new PDO("sqlite:" .$mainpath.$db);
$temp=explode('/',$db);
$project_folder=$temp[1];
$corpora=$temp[count($temp)-2];
$corporadb = new PDO("sqlite:" .$mainpath.'data/'.$corpora.'/'.$corpora.'.sqlite'); //data base with complementary data
$output = "<ul>"; // string sent to the javascript for display
#http://localhost/branch_ademe/php/test.php?type=social&query=[%22marwah,%20m%22]
$type = $_GET["type"];
$query = str_replace( '__and__', '&', $_GET["query"] );
$elems = json_decode($query);
// nombre d'item dans les tables
$sql='SELECT COUNT(*) FROM ISIABSTRACT';
foreach ($base->query($sql) as $row) {
$table_size=$row['COUNT(*)'];
}
///// Specific to rock //////////
// Other restrictions
// extracting the project folder and the year
if (strpos($gexf,'2013')>0){
$year='2013';
$year_filter=true;
}elseif (strpos($gexf,'2012')>0){
$year='2012';
$year_filter=true;
}else{
$year_filter=false;
}
// identification d'une année pour echoing
if($project_folder=='nci'){
$year_filter=true;
}
$table = "";
$column = "";
$id="";
$twjs="tinawebJS/"; // submod path of TinaWebJS
if($type=="social"){
$table = "ISIAUTHOR";
$column = "data";
$id = "id";
$restriction='';
$factor=10;// factor for normalisation of stars
}
if($type=="semantic"){
$table = "ISItermsListV1";
$column = "data";
$id = "id";
$restriction='';
$factor=10;
}
// identification d'une année pour echoing
if($project_folder=='nci'){
$restriction.=" AND ISIpubdate='2013'";
}
$sql = 'SELECT sum(tfidf),id
FROM tfidf where (';
foreach($elems as $elem){
$sql.=' term="'.$elem.'" OR ';
}
#$querynotparsed=$sql;#####
$sql = substr($sql, 0, -3);
$sql = str_replace( ' & ', '" OR term="', $sql );
$sql.=')'.//$restriction.
'GROUP BY '.$id.'
ORDER BY sum(tfidf) DESC
LIMIT 1000';
//echo $sql;
#$queryparsed=$sql;#####
$wos_ids = array();
$sum=0;
//echo $sql;//The final query!
// array of all relevant documents with score
$count=0;
foreach ($corporadb ->query($sql) as $row) {
//if ($count<4*$max_item_displayed){
$wos_ids[$row[$id]] = $row['sum(tfidf)'];//$row["count(*)"];
$sum = $row["count(*)"] +$sum;
//}else{
// continue;
//}
}
//arsort($wos_ids);
$number_doc=ceil(count($wos_ids)/3);
$count=0;
foreach ($wos_ids as $id => $score) {
if ($count<1000){
// retrieve publication year
$sql = 'SELECT data FROM ISIpubdate WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$pubdate=$row['data'];
}
// to filter under some conditions
$to_display=true;
if ($project_folder=='echoing'){
if ($year_filter){
if ($pubdate!=$year){
$to_display=false;
}
}
}elseif($project_folder=='nci'){
if ($year_filter){
if ($pubdate!='2013'){
$to_display=false;
}
}
}
if ($to_display){
$count+=1;
$output.="<li title='".$score."'>";
$output.=imagestar($score,$factor,$twjs).' ';
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.='<a href="default_doc_details.php?db='.urlencode($db).'&type='.urlencode($_GET["type"]).'&query='.urlencode($query).'&id='.$id.'">'.$row['data']." </a> ";
//this should be the command:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?db='.urlencode($datadb).'&id='.$id.' \')">'.$row['data']." </a> ";
//the old one:
//$output.='<a href="JavaScript:newPopup(\''.$twjs.'php/default_doc_details.php?id='.$id.' \')">'.$row['data']." </a> ";
$external_link="<a href=http://scholar.google.com/scholar?q=".urlencode('"'.$row['data'].'"')." target=blank>".' <img width=20px src="img/gs.png"></a>';
//$output.='<a href="JavaScript:newPopup(''php/doc_details.php?id='.$id.''')"> Link</a>';
}
// get the authors
$sql = 'SELECT data FROM ISIAUTHOR WHERE id='.$id;
foreach ($base->query($sql) as $row) {
$output.=strtoupper($row['data']).', ';
}
if($project_folder!='nci'){
$output.='('.$pubdate.') ';
}else {
$output.='(2013) ';
}
//<a href="JavaScript:newPopup('http://www.quackit.com/html/html_help.cfm');">Open a popup window</a>'
$output.=$external_link."</li><br>";
}
}else{
continue;
}
}
$output= '<h3>'.$count.' items related to: '.implode(' OR ', $elems).'</h3>'.$output;
echo $output;
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="img/stargrey.gif" border="0">';
}
return $star_image;
}
?>
static/lib/graphExplorer/API_CNRS/info_div.php 0 → 100755
View file @ 84cb0c12
<?php
// manage the dynamical additional information in the left panel.
// ini_set('display_errors',1);
// ini_set('display_startup_errors',1);
// error_reporting(-1);
include('parameters_details.php');
$max_item_displayed=6;
$base = new PDO("sqlite:../" .$graphdb);
include('default_div.php');
/*
* This function gets the first db name in the data folder
* IT'S NOT SCALABLE! (If you want to use several db's)
*/
function getDB ($directory) {
//$results = array();
$result = "";
$handler = opendir($directory);
while ($file = readdir($handler)) {
if ($file != "." && $file != ".."
&&
((strpos($file,'.db~'))==false && (strpos($file,'.db'))==true )
||
((strpos($file,'.sqlite~'))==false && (strpos($file,'.sqlite'))==true)
) {
//$results[] = $file;
$result = $file;
break;
}
}
closedir($handler);
//return $results;
return $result;
}
?>
static/lib/graphExplorer/API_CNRS/info_div2.php 0 → 100755
View file @ 84cb0c12
<?php
// manage the dynamical additional information in the left panel.
// include('parameters_details.php');
$gexf= str_replace('"','',$_GET["gexf"]);
$max_item_displayed=6;
$type = $_GET["type"];
$TITLE="ISITITLE";
$query = str_replace( '__and__', '&', $_GET["query"] );
$elems = json_decode($query);
$table = "";
$column = "";
$id="";
$twjs="API_CNRS/"; // submod path of TinaWebJS
if($type=="semantic"){
$table = "ISItermsListV1";
$column = "data";
$id = "id";
$restriction='';
$factor=10;
}
$restriction='';
$factor=10;
$sql="";
if (count($elems)==1){// un seul mot est sélectionné, on compte les mots multiples
$sql = 'SELECT count(*),'.$id.'
FROM '.$table.' where (';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
#$querynotparsed=$sql;#####
$sql = substr($sql, 0, -3);
$sql = str_replace( ' & ', '" OR '.$column.'="', $sql );
$sql.=')'.$restriction.'
GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000';
}else{// on compte une seule fois un mot dans un article
$factor=ceil(count($elems)/5); //les scores sont moins haut
$sql='';
foreach($elems as $elem){
$sql.=' '.$column.'="'.$elem.'" OR ';
}
$sql=substr($sql, 0, -3);
$sql='SELECT count(*),id,data FROM (SELECT *
FROM '.$table.' where ('.$sql.')'.$restriction.'
group by id,data) GROUP BY '.$id.'
ORDER BY count('.$id.') DESC
LIMIT 1000 COLLATE NOCASE';
}
// echo $sql."<br>";
$base = new PDO("sqlite:../data/terrorism/data.db");
$wos_ids = array();
$sum=0;
//The final query!
// array of all relevant documents with score
foreach ($base->query($sql) as $row) {
// on pondère le score par le nombre de termes mentionnés par l'article
//$num_rows = $result->numRows();
$wos_ids[$row[$id]] = $row["count(*)"];
$sum = $row["count(*)"] +$sum;
}
// /// nombre de document associés $related
$total_count=0;
$count_max=500;
$number_doc=count($wos_ids);
$count=0;
$all_terms_from_selected_projects=array();// list of terms for the top 6 project selected
// to filter under some conditions
$to_display=true;
$count=0;
foreach ($wos_ids as $id => $score) {
if ($total_count<$count_max) {
// retrieve publication year
if ($to_display){
$total_count+=1;
if ($count<=$max_item_displayed){
$count+=1;
$sql = 'SELECT data FROM ISITITLE WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$external_link="<a href=http://google.com/webhp?#q=".urlencode('"'.utf8_decode($row['data']).'"')." target=blank>".' <img width=15px src="'.$twjs.'img/google.png"></a>';
$output.="<li title='".$score."'>";
$output.=$external_link.imagestar($score,$factor,$twjs).' ';
$output.='<a href="JavaScript:newPopup(\''.$twjs.'default_doc_details2.php?gexf='.urlencode($gexf).'&query='.urlencode($query).'&type='.urlencode($_GET["type"]).'&id='.$id.' \')">'.htmlentities($row['data'], ENT_QUOTES, "UTF-8")." </a> ";
// $output.='<a>'.htmlentities($row['data'], ENT_QUOTES, "UTF-8")." </a> ";
}
$sql = 'SELECT data FROM ISIDOI WHERE id='.$id.' group by data';
foreach ($base->query($sql) as $row) {
$output.=$external_link.imagestar($score,$factor,$twjs).' ';
$output.='<a href="JavaScript:newPopup(\''.$twjs.'default_doc_details2.php?gexf='.urlencode($gexf).'&query='.urlencode($query).'&type='.urlencode($_GET["type"]).'&id='.$id.' \')">'.htmlentities($row['data'], ENT_QUOTES, "UTF-8")." </a> ";
} // get the authors
$sql2 = 'SELECT data FROM ISIAUTHOR WHERE id='.$id. ' group by data';
foreach ($base->query($sql2) as $row2) {
$output.=(str_replace("\r", "", $row2['data'])).', ';
}
$output = rtrim($output, ", ");
$output.="</li><br>";
}
}
} else{
continue;
}
}
if ($total_count<$count_max){
$related .= $total_count;
}else{
$related .= ">".$count_max;
}
$output .= "</ul>"; #####
// echo $output."<br>";
if($max_item_displayed>$related) $max_item_displayed=$related;
echo $news.'<br/><h4><font color="#0000FF"> Full text of top '.$max_item_displayed.'/'.$related.' related grant proposals:</font></h4>'.$output;
//pt - 301 ; 15.30
/*
* This function gets the first db name in the data folder
* IT'S NOT SCALABLE! (If you want to use several db's)
*/
function getDB ($directory) {
//$results = array();
$result = "";
$handler = opendir($directory);
while ($file = readdir($handler)) {
if ($file != "." && $file != ".."
&&
((strpos($file,'.db~'))==false && (strpos($file,'.db'))==true )
||
((strpos($file,'.sqlite~'))==false && (strpos($file,'.sqlite'))==true)
) {
//$results[] = $file;
$result = $file;
break;
}
}
closedir($handler);
//return $results;
return $result;
}
function imagestar($score,$factor,$twjs) {
// produit le html des images de score
$star_image = '';
if ($score > .5) {
$star_image = '';
for ($s = 0; $s < min(5,$score/$factor); $s++) {
$star_image.='<img src="'.$twjs.'img/star.gif" border="0" >';
}
} else {
$star_image.='<img src="'.$twjs.'img/stargrey.gif" border="0">';
}
return $star_image;
}
?>
static/lib/graphExplorer/API_CNRS/js/jquery-1.9.1.js 0 → 100755
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static/lib/graphExplorer/API_CNRS/js/jquery-ui.css 0 → 100755
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static/lib/graphExplorer/API_CNRS/js/jquery-ui.js 0 → 100755
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static/lib/graphExplorer/API_CNRS/listFiles.php 0 → 100755
View file @ 84cb0c12
<?php
header ("Content-Type:application/json");
//$string = getcwd();
//$string = str_replace("/php","",$string);
$string=dirname(dirname(getcwd())); // ProjectExplorer folder name: /var/www/ademe
//$files = getDirectoryList($string."/data");
include("DirectoryScanner.php");
$projectFolderPat = dirname(dirname(getcwd())) . "/";
$instance = new scanTree($projectFolderPat);
$instance->getDirectoryTree("data");
$gexfs=$instance->gexf_folder;
$files=array();
foreach($gexfs as $key => $value){
array_push($files,$key);
}
$filesSorted=array();
foreach($files as $file){
array_push($filesSorted,$file);
}
sort($filesSorted);
echo json_encode($filesSorted);
function getDirectoryList ($directory) {
$results = array();
$handler = opendir($directory);
while ($file = readdir($handler)) {
if ($file != "." && $file != ".." &&
(strpos($file,'.gexf~'))==false &&
(strpos($file,'.gexf'))==true) {
$results[] = $file;
}
}
closedir($handler);
return $results;
}
?>
static/lib/graphExplorer/API_CNRS/parameters_details.php 0 → 100755
View file @ 84cb0c12
<?php
$gexf_db = array();
$gexf_db["data/medq1/20141208_MED_01_bi.gexf"] = "data/medq1/01_medline-query1.db";
$gexf_db["data/medq2/20141128_MED_02_bi.gexf"] = "data/medq2/02_medline-query2.db";
$gexf_db["data/medq2/20141128_MED_03_bi.gexf"] = "data/medq2/02_medline-query2.db";
$gexf_db["data/medq2/20141208_MED_Author_name-ISItermsjulien_index.gexf"] = "data/medq2/02_medline-query2.db";
$gexf_db["data/20141128_GPs_03_bi.gexf"] = "data/00_grantproposals.db";
$gexf_db["data/20141215_GPs_04.gexf"] = "data/00_grantproposals.db";
# new stuff
$gexf_db["data/terrorism/terrorism_mono.gexf"] = "data/terrorism/data.db";
$gexf_db["data/terrorism/terrorism_bi.gexf"] = "data/terrorism/data.db";
# new stuff2
$gexf_db["data/ClimateChange/hnetwork-2014_2015hhn-wosclimatechange2014_2015top509-ISItermsListV3bis-ISItermsListV3bis-distributionalcooc-99999-oT0.36-20-louTrue.gexf"] = "data/ClimateChange/wosclimatechange-61715-1-wosclimatechange-db(2).db";
$gexf_db["data/ClimateChange/ClimateChangeV1.gexf"] = "data/ClimateChange/wosclimatechange-61715-1-wosclimatechange-db(2).db";
$gexf_db["data/ClimateChange/hnetwork-2014_2015hn-wosclimatechange2014_2015top509-ISItermsListV3bis-ISItermsListV3bis-distributionalcooc-99999-oT0.36-20-louTrue.gexf"] = "data/ClimateChange/wosclimatechange-61715-1-wosclimatechange-db(2).db";
$gexf= str_replace('"','',$_GET["gexf"]);
$mainpath=dirname(getcwd())."/";
$graphdb = $gexf_db[$gexf];
?>
static/lib/graphExplorer/API_CNRS/tfidf.php 0 → 100755
View file @ 84cb0c12
<?php
echo '<meta http-equiv="Content-type" content="text/html; charset=UTF-8"/>';
// compute the tfidf score for each terms for each document for cortext like databases and store them in a specific table
//include('parameters_details.php');
$db = new PDO("sqlite:graph.db");
$database_name='echoing.sqlite';
$project_base = new PDO("sqlite:" .$database_name);
// Table creation
// efface la base existante
$project_base->exec("DROP TABLE IF EXIST tfidf");
pt("creation of tfidf table");
//on crée un table pour les infos de clusters
$project_base->exec("CREATE TABLE tfidf (id NUMERIC,term TEXT,tfidf NUMERIC)");
//generating number of mention of terms in the corpora
$terms_freq=array();
pt('processing terms frequency');
$sql='SELECT count(*),data FROM ISItermsListV1 group by data';
foreach ($db->query($sql) as $term) {
$terms_freq[$term['data']]=$term['count(*)'];
}
pt('processing number of doc');
// nombre d'iterator_apply(iterator, function)em dans les tables
$sql='SELECT COUNT(*) FROM ISIABSTRACT';
foreach ($db->query($sql) as $row) {
$table_size=$row['COUNT(*)'];
}
pt($table_size.' documents in database');
// select all the doc
$sql='SELECT * FROM ISIABSTRACT';
foreach ($db->query($sql) as $doc) {
$id=$doc['id'];
pt($id);
//select all the terms of that document with their occurrences
$sql2="SELECT count(*),data FROM ISItermsListV1 where id='".$id."' group by data";
// for each term we compute the tfidf
foreach ($db->query($sql2) as $term_data) {
$term=$term_data['data'];
$term_occ_in_doc=$term_data['count(*)'];
$terms_tfidf=log(1+$term_occ_in_doc)*log($table_size/$terms_freq[$term]);
$query='INSERT INTO tfidf (id,term,tfidf) VALUES ('.$id.',"'.$term.'",'.$terms_tfidf.')';
$project_base->query($query);
}
}
function pt ($string) {
echo $string.'<br/>';
}
?>
static/lib/graphExplorer/db.json 0 → 100755
View file @ 84cb0c12
{
"data/ClimateChange": {
"dbname":"wosclimatechange-61490-1-wosclimatechange-db.db",
"title":"ISITITLE",
"date":"ISIpubdate",
"abstract":"ISIABSTRACT",
"gexfs": {
"hnetwork-2014_2015hn-wosclimatechange2014_2015top509-ISItermsListV3bis-ISItermsListV3bis-distributionalcooc-99999-oT0.36-20-louTrue.gexf": {
"social": { "table":"ISIAUTHOR" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsListV3bis" , "textCol":"data","forkeyCol":"id"}
},
"ClimateChangeV1.gexf": {
"social": { "table":"ISIAUTHOR" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsListV3bis" , "textCol":"data","forkeyCol":"id"}
}
}
},"data/terrorism": {
"dbname":"data.db",
"title":"ISITITLE",
"date":"ISIpubdate",
"abstract":"ISIABSTRACT",
"gexfs": {
"terrorism_bi.gexf": {
"social": { "table":"ISIAUTHOR" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsListV1" , "textCol":"data","forkeyCol":"id"}
},
"terrorism_mono.gexf":{
"semantic": { "table":"ISItermsListV1" , "textCol":"data","forkeyCol":"id"}
}
}
},
"data/medq2/": {
"dbname":"02_medline-query2.db",
"title":"ArticleTitle",
"date":"ISIpubdate",
"abstract":"Abstract",
"gexfs": {
"20141208_MED_Author_name-ISItermsjulien_index.gexf": {
"social": { "table":"Author_name" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsBigWL" , "textCol":"data","forkeyCol":"id"}
}
}
}
}
static/lib/graphExplorer/doc/call_graph.dot 0 → 100644
View file @ 84cb0c12
// dot call_graph.dot -Tpng -o tina_call_graph.png
digraph tina_call_graph {
graph [ordering="out"];
rankdir=LR ;
edge [fontsize=10] ;
label=<<B><U>tinawebJS</U></B><BR/>(initialization callgraph)>;
labelloc="t" ;
// settings
"settings var" -> "settings:SystemStates";
"settings var" -> "settings:sigmaJsDrawingProperties";
"settings var" -> "etc.";
// getUrlParam
"t.globalUtils:getUrlParam" -> "var mainfile (url)" ;
// main 1: get graph
"t.main" -> "var mainfile (url)" ;
"var mainfile (url)" -> "ajax garg" ;
"ajax garg" -> "t.main:MainFunction" ;
// main 2: parse graph
"t.main:MainFunction" -> "t.sigma.parseCustom:ParseCustom" ;
"t.main:MainFunction" -> "t.sigma.parseCustom:scanFile" ;
"t.sigma.parseCustom:scanFile" -> "t.sigma.parseCustom:getJSONCategories" ;
"t.sigma.parseCustom:getJSONCategories" -> "t.sigma.parseCustom:scanJSON" ;
"t.main:MainFunction" -> "t.sigma.parseCustom:makeSystemStates" ;
"t.main:MainFunction" -> "t.sigma.parseCustom:buildInitialState" ;
"t.main:MainFunction" -> "t.sigma.parseCustom:makeDicts" ;
"t.sigma.parseCustom:makeDicts" -> "t.sigma.parseCustom:dictfyJSON" [label="cats={'terms':0}"] ;
// main 3: new TinaWebJS()
"t.main:MainFunction" -> "var twjs_" ;
"var twjs_" -> "t.TinawebJS:TinaWebJS:new" ;
// main 4: adjust canvas routine
"t.main:MainFunction" -> "t.TinawebJS:AdjustSigmaCanvas" ; // twjs_.AdjustSigmaCanvas()
"t.TinawebJS:AdjustSigmaCanvas" -> "t.TinawebJS:sigmaLimits" ;
"t.TinawebJS:sigmaLimits" -> "t.TinawebJS:visibleHeight" ;
"t.TinawebJS:sigmaLimits" -> "new canvas!" ;
// main 5: partialGraph and new SigmaUtils()
"t.main:MainFunction" -> "var partialGraph" ;
"var partialGraph" -> "sigma:init";
"t.main:MainFunction" -> "t.SigmaUtils:SigmaUtils:new" ;
"t.main:MainFunction" -> "t.SigmaUtils:SigmaUtils:FillGraph" ; // [ Poblating the Sigma-Graph ]
"t.SigmaUtils:SigmaUtils:FillGraph" -> "SigmaPublic.addNode" [label="x N"];
"t.SigmaUtils:SigmaUtils:FillGraph" -> "SigmaPublic.addEdge" [label="x N"];
"SigmaPublic.addEdge" -> "t.globalUtils:hex2rga" [label="x M"];
"t.SigmaUtils:SigmaUtils:FillGraph" -> "t.enviroment:updateSearchLabels" [label="N x push labels"];
// main 6: state and settings for partialGraph
// "settings:sigmaJsDrawingProperties" -> "var partialGraph" ;
// "settings:SystemStates" -> "var partialGraph" ;
"var partialGraph" -> "t.main:partialGraph:setState";
// main 7: twjs_.initListeners( categories , partialGraph)
"t.main:MainFunction" -> "t.TinawebJS:initListeners" ;
"t.TinawebJS:initListeners" -> "t.TinawebJS:SelectionEngine:new" [label="initListeners:SelInst"] ;
"t.TinawebJS:initListeners" -> "onclick:#changetype" ;
"t.TinawebJS:initListeners" -> "onclick:#changelevel" ;
"t.TinawebJS:initListeners" -> "onclick:#aUnfold" ;
"t.TinawebJS:initListeners" -> "t.minimap:startMiniMap" [label = "if minimap"] ;
"t.TinawebJS:initListeners" -> "t.methods:pushSWClick" [label = "var swclickActual"] ;
"t.TinawebJS:initListeners" -> "t.methods:cancelSelection" ;
"t.methods:cancelSelection" -> "t.methods:highlightSelectedNodes" [label = "false"] ;
"t.methods:highlightSelectedNodes" -> "t.globalUtils:is_empty" ;
"t.methods:cancelSelection" -> "erase:#names" ;
"t.methods:cancelSelection" -> "erase:#ngrams_actions" ;
"t.methods:cancelSelection" -> "erase:#topPapers" ;
"t.methods:cancelSelection" -> "erase:#opossiteNodes" ;
"t.methods:cancelSelection" -> "erase:#searchinput" ;
"t.methods:cancelSelection" -> "t.methods:LevelButtonDisable" ;
"t.TinawebJS:initListeners" -> "t.sigmaUtils:showMeSomeLabels" ;
"t.sigmaUtils:showMeSomeLabels" -> "t.sigmaUtils:getVisibleNodes" ;
"t.TinawebJS:initListeners" -> "t.TinawebJS:SearchListeners" ;
"t.TinawebJS:SearchListeners" -> "autocomplete:#searchinput" ;
"autocomplete:#searchinput" -> "t.TinawebJS:SelectionEngine:new" [label="SearchListeners:SelInst"] ;
/*t.methods:highlightSelectedNodes*/
}
static/lib/graphExplorer/doc/console_commands.snippets.js 0 → 100644
View file @ 84cb0c12
partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.2).draw();
SystemStates
// {
// "level": true,
// "type": [
// true
// ],
// "selections": [],
// "opposites": [],
// "categories": [
// "terms"
// ],
// "categoriesDict": {
// "terms": "0"
// },
// "LouvainFait": false
// }
static/lib/graphExplorer/example_start_explorer.html 0 → 100755
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static/lib/graphExplorer/extras_explorerjs.js 100644 → 100755
View file @ 84cb0c12
......@@ -3,11 +3,13 @@
*/
function newPopup(url) {
console.log('FUN extras_explorerjs:newPopup')
popupWindow = window.open(url,'popUpWindow','height=700,width=800,left=10,top=10,resizable=yes,scrollbars=yes,toolbar=no,menubar=no,location=no,directories=no,status=no')
}
function getIDFromURL( item ) {
console.log('FUN extras_explorerjs:getIDFromURL')
var pageurl = window.location.href.split("/")
var cid;
for(var i in pageurl) {
......@@ -20,6 +22,7 @@ function getIDFromURL( item ) {
}
function modify_ngrams( classname ) {
console.log('FUN extras_explorerjs:modify_ngrams')
console.clear()
var corpus_id = getIDFromURL( "corpora" ) // not used
......@@ -92,6 +95,7 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
// then, add the button in the html with the sigmaUtils.clustersBy(x) listener.
//TODO: move to ClustersPlugin.js or smntng
function ChangeGraphAppearanceByAtt( manualflag ) {
console.log('FUN extras_explorerjs:ChangeGraphAppearanceByAtt')
if ( !isUndef(manualflag) && !colorByAtt ) colorByAtt = manualflag;
if(!colorByAtt) return;
......@@ -198,7 +202,8 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
return b-a
});
console.clear()
// console.clear()
console.log( AttsDict_sorted )
for (var i in AttsDict_sorted) {
var att_s = AttsDict_sorted[i].key;
......@@ -230,6 +235,7 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
// then, it runs external library jLouvain()
//TODO: move to ClustersPlugin.js or smntng
function RunLouvain() {
console.log('FUN extras_explorerjs:RunLouvain')
var node_realdata = []
var nodesV = getVisibleNodes()
......@@ -256,6 +262,7 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
// Highlight nodes belonging to cluster_i when you click in thecluster_i of the legend
//TODO: move to ClustersPlugin.js or smntng
function HoverCluster( ClusterCode ) {
console.log('FUN extras_explorerjs:HoverCluster')
console.log( ClusterCode )
var raw = ClusterCode.split("||")
......@@ -343,6 +350,7 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
// daclass = "clust_default" | "clust_louvain" | "clust_x" ...
//TODO: move to ClustersPlugin.js or smntng
function set_ClustersLegend ( daclass ) {
console.log('FUN extras_explorerjs:set_ClustersLegend')
//partialGraph.states.slice(-1)[0].LouvainFait = true
if( daclass=="clust_default" && Clusters.length==0)
......@@ -404,6 +412,7 @@ function CRUD( list_id , ngram_ids , http_method , callback) {
// PHP-mode when you've a cortext db.
function getTopPapers_OriginalVersion(type){
console.log('FUN extras_explorerjs:getTopPapers_OriginalVersion')
if(getAdditionalInfo){
jsonparams=JSON.stringify(getSelections());
bi=(Object.keys(categories).length==2)?1:0;
......@@ -435,7 +444,7 @@ function getTopPapers_OriginalVersion(type){
// PHP-mode when you've a cortext db.
function getTopProposals(type , jsonparams , thisgexf) {
console.log('FUN extras_explorerjs:getTopProposals')
type = "semantic";
if(swclickActual=="social") {
nodesA = []
......@@ -491,6 +500,7 @@ function getTopProposals(type , jsonparams , thisgexf) {
// Just for Garg
function genericGetTopPapers(theids , corpus_id , thediv) {
console.log('FUN extras_explorerjs:genericGetTopPapers')
if(getAdditionalInfo) {
$("#"+thediv).show();
$.ajax({
......@@ -551,6 +561,7 @@ function genericGetTopPapers(theids , corpus_id , thediv) {
// Just for Garg: woops, override
function getTopPapers(type){
console.log('FUN extras_explorerjs:getTopPapers')
if(getAdditionalInfo){
$("#topPapers").show();
......@@ -624,7 +635,7 @@ function getTopPapers(type){
jsstuff += "wnws_buffer = window.open('"+getpubAPI+"', 'popUpWindow' , '"+jsparams+"')";
output += "<li><a onclick=\""+jsstuff+"\" target=_blank>"+pub["title"]+"</a>. "+ifauthors+". "+ifjournal+". "+ifkeywords+". "+ifdate+"\n";
output += '<a href="'+gquery+'" target=_blank><img title="Query to Google" src="'+window.location.origin+'/static/img/searx.png"></img></a>'
output += '<a href="'+gquery+'" target=_blank><img title="Query to Google" src="'+window.location.origin+'/static/img/google.png"></img></a>'
output +="</li>\n";
// for(var j in pub) {
// if(j!="abstract")
......@@ -654,6 +665,7 @@ function getTopPapers(type){
}
function getCookie(name) {
console.log('FUN extras_explorerjs:getCookie')
var cookieValue = null;
if (document.cookie && document.cookie != '') {
var cookies = document.cookie.split(';');
......@@ -670,6 +682,7 @@ function getCookie(name) {
}
// Just for Garg
function printCorpuses() {
console.log('FUN extras_explorerjs:printCorpuses')
console.clear()
console.log( "!!!!!!!! Corpus chosen, going to make the diff !!!!!!!! " )
pr(corpusesList)
......@@ -768,7 +781,7 @@ function printCorpuses() {
// var pageurl = window.location.href.split("/")
// var cid;
// for(var i in pageurl) {
// if(pageurl[i]=="corpus") {
// if(pageurl[i]=="corpora") {
// cid=parseInt(i);
// break;
// }
......@@ -791,6 +804,7 @@ function printCorpuses() {
// Just for Garg
function GetUserPortfolio() {
console.log('FUN extras_explorerjs:GetUserPortfolio')
//http://localhost:8000/api/corpusintersection/1a50317a50145
var pageurl = window.location.href.split("/")
var pid;
......@@ -804,7 +818,7 @@ function GetUserPortfolio() {
var cid;
for(var i in pageurl) {
if(pageurl[i]=="corpus") {
if(pageurl[i]=="corpora") {
cid=parseInt(i);
break;
}
......@@ -908,6 +922,7 @@ function GetUserPortfolio() {
}
function camaraButton(){
console.log('FUN extras_explorerjs:camaraButton')
$("#PhotoGraph").click(function (){
//canvas=partialGraph._core.domElements.nodes;
......@@ -960,6 +975,7 @@ function camaraButton(){
}
function getTips(){
console.log('FUN extras_explorerjs:getTips')
param='';
text =
......
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View file @ 84cb0c12
{"graph": [["name", "()"]], "links": [{"target": 34, "source": 54, "weight": 1}, {"target": 25, "source": 54, "weight": 1}, {"target": 10, "source": 54, "weight": 1}, {"target": 20, "source": 14, "weight": 1}, {"target": 67, "source": 14, "weight": 1}, {"target": 4, "source": 55, "weight": 1}, {"target": 38, "source": 55, "weight": 1}, {"target": 34, "source": 15, "weight": 1}, {"target": 33, "source": 56, "weight": 1}, {"target": 19, "source": 56, "weight": 1}, {"target": 73, "source": 56, "weight": 1}, {"target": 10, "source": 56, "weight": 1}, {"target": 26, "source": 57, "weight": 1}, {"target": 7, "source": 57, "weight": 1}, {"target": 76, "source": 0, "weight": 1}, {"target": 21, "source": 0, "weight": 1}, {"target": 75, "source": 0, "weight": 1}, {"target": 58, "source": 16, "weight": 1}, {"target": 77, "source": 16, "weight": 1}, {"target": 22, "source": 32, "weight": 1}, {"target": 21, "source": 32, "weight": 1}, {"target": 58, "source": 32, "weight": 1}, {"target": 74, "source": 33, "weight": 1}, {"target": 73, "source": 33, "weight": 1}, {"target": 67, "source": 34, "weight": 1}, {"target": 8, "source": 18, "weight": 1}, {"target": 7, "source": 18, "weight": 1}, {"target": 39, "source": 18, "weight": 1}, {"target": 51, "source": 35, "weight": 1}, {"target": 7, "source": 1, "weight": 1}, {"target": 53, "source": 1, "weight": 1}, {"target": 79, "source": 1, "weight": 1}, {"target": 46, "source": 59, "weight": 1}, {"target": 48, "source": 59, "weight": 1}, {"target": 42, "source": 59, "weight": 1}, {"target": 22, "source": 60, "weight": 1}, {"target": 78, "source": 60, "weight": 1}, {"target": 79, "source": 60, "weight": 1}, {"target": 40, "source": 61, "weight": 1}, {"target": 62, "source": 61, "weight": 1}, {"target": 17, "source": 61, "weight": 1}, {"target": 39, "source": 61, "weight": 1}, {"target": 12, "source": 9, "weight": 1}, {"target": 7, "source": 9, "weight": 1}, {"target": 4, "source": 36, "weight": 1}, {"target": 74, "source": 36, "weight": 1}, {"target": 3, "source": 36, "weight": 1}, {"target": 70, "source": 37, "weight": 1}, {"target": 49, "source": 37, "weight": 1}, {"target": 6, "source": 37, "weight": 1}, {"target": 69, "source": 19, "weight": 1}, {"target": 43, "source": 19, "weight": 1}, {"target": 10, "source": 19, "weight": 1}, {"target": 44, "source": 38, "weight": 1}, {"target": 64, "source": 7, "weight": 1}, {"target": 29, "source": 7, "weight": 1}, {"target": 53, "source": 7, "weight": 1}, {"target": 66, "source": 7, "weight": 1}, {"target": 27, "source": 7, "weight": 1}, {"target": 67, "source": 7, "weight": 1}, {"target": 17, "source": 62, "weight": 1}, {"target": 26, "source": 2, "weight": 1}, {"target": 4, "source": 2, "weight": 1}, {"target": 74, "source": 2, "weight": 1}, {"target": 75, "source": 12, "weight": 1}, {"target": 21, "source": 12, "weight": 1}, {"target": 69, "source": 43, "weight": 1}, {"target": 63, "source": 43, "weight": 1}, {"target": 69, "source": 63, "weight": 1}, {"target": 65, "source": 63, "weight": 1}, {"target": 11, "source": 52, "weight": 1}, {"target": 39, "source": 52, "weight": 1}, {"target": 51, "source": 20, "weight": 1}, {"target": 23, "source": 65, "weight": 1}, {"target": 66, "source": 4, "weight": 1}, {"target": 30, "source": 4, "weight": 1}, {"target": 44, "source": 4, "weight": 1}, {"target": 45, "source": 4, "weight": 1}, {"target": 22, "source": 21, "weight": 1}, {"target": 24, "source": 21, "weight": 1}, {"target": 75, "source": 21, "weight": 1}, {"target": 41, "source": 66, "weight": 1}, {"target": 22, "source": 5, "weight": 1}, {"target": 50, "source": 22, "weight": 1}, {"target": 42, "source": 23, "weight": 1}, {"target": 28, "source": 24, "weight": 1}, {"target": 75, "source": 24, "weight": 1}, {"target": 29, "source": 67, "weight": 1}, {"target": 71, "source": 68, "weight": 1}, {"target": 39, "source": 68, "weight": 1}, {"target": 73, "source": 25, "weight": 1}, {"target": 10, "source": 25, "weight": 1}, {"target": 72, "source": 31, "weight": 1}, {"target": 28, "source": 31, "weight": 1}, {"target": 77, "source": 69, "weight": 1}, {"target": 79, "source": 41, "weight": 1}, {"target": 13, "source": 41, "weight": 1}, {"target": 26, "source": 44, "weight": 1}, {"target": 48, "source": 46, "weight": 1}, {"target": 51, "source": 46, "weight": 1}, {"target": 6, "source": 70, "weight": 1}, {"target": 11, "source": 47, "weight": 1}, {"target": 28, "source": 72, "weight": 1}, {"target": 8, "source": 72, "weight": 1}, {"target": 8, "source": 28, "weight": 1}, {"target": 79, "source": 53, "weight": 1}, {"target": 79, "source": 13, "weight": 1}], "nodes": [{"id": "matrix solid-phase dispersion"}, {"id": "systemic insecticides"}, {"id": "pyrethroid insecticide"}, {"id": "honey bee colony losses"}, {"id": "neonicotinoid insecticides"}, {"id": "aqueous media"}, {"id": "tau-fluvalinate residues"}, {"id": "honey bees"}, {"id": "stir bar sorptive extraction"}, {"id": "field conditions"}, {"id": "dispersive liquid-liquid microextraction"}, {"id": "honeybee colonies"}, {"id": "environmental contaminants"}, {"id": "osmia lignaria"}, {"id": "honey bee colonies"}, {"id": "chromatographic determination"}, {"id": "case study"}, {"id": "adult honey bees"}, {"id": "high levels"}, {"id": "diode-array detection"}, {"id": "semi-field conditions"}, {"id": "gas chromatography"}, {"id": "degradation products"}, {"id": "veterinary drugs"}, {"id": "electron-capture detection"}, {"id": "organochlorine pesticides"}, {"id": "varroa mites"}, {"id": "repellent chemicals"}, {"id": "solid-phase microextraction"}, {"id": "bee products"}, {"id": "foraging behavior"}, {"id": "organophosphorus pesticides"}, {"id": "solid-phase extraction"}, {"id": "solvent extraction"}, {"id": "honey samples"}, {"id": "diamondback moth"}, {"id": "potential impact"}, {"id": "hive ( part"}, {"id": "colony population decline"}, {"id": "honey bee colony"}, {"id": "larval honey bees"}, {"id": "megachile rotundata"}, {"id": "life-history traits"}, {"id": "liquid chromatography"}, {"id": "honey bee"}, {"id": "fluvalinate resistance"}, {"id": "pesticide determination"}, {"id": "chronic exposure"}, {"id": "liquid chromatography-tandem mass spectrometry"}, {"id": "agricultural landscapes"}, {"id": "flight activity"}, {"id": "other insects"}, {"id": "plant protection products"}, {"id": "foraging activity"}, {"id": "gas chromatography-mass spectrometry"}, {"id": "colony collapse disorder"}, {"id": "high performance liquid chromatography"}, {"id": "assess sublethal effects"}, {"id": "crop pollination"}, {"id": "multi-residue method"}, {"id": "pesticide risk assessment"}, {"id": "biotin-binding protein"}, {"id": "hypopharyngeal glands"}, {"id": "sensitive method"}, {"id": "bumble bees"}, {"id": "simultaneous determination"}, {"id": "laboratory tests"}, {"id": "pesticide residues"}, {"id": "agricultural landscape"}, {"id": "neonicotinoid insecticides residues"}, {"id": "pesticide fate"}, {"id": "ecosystem services"}, {"id": "liquid chromatography-mass spectrometry"}, {"id": "bee pollen"}, {"id": "gas chromatographic"}, {"id": "mass spectrometric"}, {"id": "honey bee losses"}, {"id": "crop pollinators"}, {"id": "colony health"}, {"id": "sublethal effects"}], "multigraph": false, "directed": false}
\ No newline at end of file
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/**
* @preserve
* Project: Bootstrap Hover Dropdown
* Author: Cameron Spear
* Version: v2.0.10
* Contributors: Mattia Larentis
* Dependencies: Bootstrap's Dropdown plugin, jQuery
* Description: A simple plugin to enable Bootstrap dropdowns to active on hover and provide a nice user experience.
* License: MIT
* Homepage: http://cameronspear.com/blog/bootstrap-dropdown-on-hover-plugin/
*/
!function($,n,e){var o=$();$.fn.dropdownHover=function(e){return"ontouchstart"in document?this:(o=o.add(this.parent()),this.each(function(){function t(e){o.find(":focus").blur(),h.instantlyCloseOthers===!0&&o.removeClass("open"),n.clearTimeout(c),i.addClass("open"),r.trigger(a)}var r=$(this),i=r.parent(),d={delay:500,instantlyCloseOthers:!0},s={delay:$(this).data("delay"),instantlyCloseOthers:$(this).data("close-others")},a="show.bs.dropdown",u="hide.bs.dropdown",h=$.extend(!0,{},d,e,s),c;i.hover(function(n){return i.hasClass("open")||r.is(n.target)?void t(n):!0},function(){c=n.setTimeout(function(){i.removeClass("open"),r.trigger(u)},h.delay)}),r.hover(function(n){return i.hasClass("open")||i.is(n.target)?void t(n):!0}),i.find(".dropdown-submenu").each(function(){var e=$(this),o;e.hover(function(){n.clearTimeout(o),e.children(".dropdown-menu").show(),e.siblings().children(".dropdown-menu").hide()},function(){var t=e.children(".dropdown-menu");o=n.setTimeout(function(){t.hide()},h.delay)})})}))},$(document).ready(function(){$('[data-hover="dropdown"]').dropdownHover()})}(jQuery,this);
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/* ===================================================
* bootstrap-transition.js v2.0.2
* http://twitter.github.com/bootstrap/javascript.html#transitions
* ===================================================
* Copyright 2012 Twitter, Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* ========================================================== */
!function( $ ) {
$(function () {
"use strict"
/* CSS TRANSITION SUPPORT (https://gist.github.com/373874)
* ======================================================= */
$.support.transition = (function () {
var thisBody = document.body || document.documentElement
, thisStyle = thisBody.style
, support = thisStyle.transition !== undefined || thisStyle.WebkitTransition !== undefined || thisStyle.MozTransition !== undefined || thisStyle.MsTransition !== undefined || thisStyle.OTransition !== undefined
return support && {
end: (function () {
var transitionEnd = "TransitionEnd"
// if ( $.browser.webkit ) {
// transitionEnd = "webkitTransitionEnd"
// } else if ( $.browser.mozilla ) {
// transitionEnd = "transitionend"
// } else if ( $.browser.opera ) {
// transitionEnd = "oTransitionEnd"
// }
return transitionEnd
}())
}
})()
})
}( window.jQuery );
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body{padding-top:50px}#banner{border-bottom:0}.page-header h1{font-size:4em}.bs-docs-section{margin-top:8em}.affix{top:70px}footer{margin:5em 0}footer li{float:left;margin-right:1.5em;margin-bottom:1.5em}footer p{margin-bottom:0;clear:left}.splash{padding:6em 0 2em;color:#fff;text-align:center;background:-webkit-linear-gradient(70deg,#080f1f 30%,#2b4b5a 87%,#435e67 100%);background:-o-linear-gradient(70deg,#080f1f 30%,#2b4b5a 87%,#435e67 100%);background:-ms-linear-gradient(70deg,#080f1f 30%,#2b4b5a 87%,#435e67 100%);background:-moz-linear-gradient(70deg,#080f1f 30%,#2b4b5a 87%,#435e67 100%);background:linear-gradient(20deg,#080f1f 30%,#2b4b5a 87%,#435e67 100%);background-attachment:fixed;background-color:#1c2533}.splash .alert{margin:4em 0 2em}.splash h1{font-size:4em}.splash #social{margin-top:6em}.section-tout{padding:4em 0 3em;background-color:#eaf1f1;border-top:1px solid rgba(255,255,255,0.1);border-bottom:1px solid rgba(0,0,0,0.1)}.section-tout [class^="icon-"]{margin-right:.5em}.section-tout p{margin-bottom:3em}.section-preview{padding:4em 0 4em}.section-preview .preview{margin-bottom:4em;background-color:#eaf1f1;border:1px solid rgba(0,0,0,0.1);border-radius:6px}.section-preview .preview .image{padding:5px}.section-preview .preview .image img{border:1px solid rgba(0,0,0,0.1)}.section-preview .preview .options{padding:0 2em 2em;text-align:center}.section-preview .preview .options p{margin-bottom:2em}.section-preview .dropdown-menu{text-align:left}.section-preview .lead{margin-bottom:2em}@media(max-width:767px){.section-preview .image img{width:100%}}.bsa .one .bsa_it_ad{background-color:transparent!important;border:none!important}.bsa .one .bsa_it_ad .bsa_it_t,.bsa .one .bsa_it_ad .bsa_it_d{color:inherit!important}.bsa .one .bsa_it_p{display:none}
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$('[data-toggle="tooltip"]').tooltip();
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(function(){
var bsa = document.createElement('script');
bsa.type = 'text/javascript';
bsa.async = true;
bsa.src = 'http://s3.buysellads.com/ac/bsa.js';
(document.getElementsByTagName('head')[0]||document.getElementsByTagName('body')[0]).appendChild(bsa);
})();
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@font-face {
font-family: 'Josefin Sans';
font-style: normal;
font-weight: 300;
src: local('Josefin Sans Light'), local('JosefinSans-Light'), url('JosefinSans300.woff') format('woff');
}
@font-face {
font-family: 'Josefin Sans';
font-style: normal;
font-weight: 400;
src: local('Josefin Sans'), local('JosefinSans'), url('JosefinSans400.woff') format('woff');
}
@font-face {
font-family: 'Josefin Sans';
font-style: normal;
font-weight: 700;
src: local('Josefin Sans Bold'), local('JosefinSans-Bold'), url('JosefinSans700.woff') format('woff');
}
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.fsslider {
position: relative;
min-width: 100px;
height: 8px;
display: inline-block;
width: 100%;
-webkit-touch-callout: none;
-webkit-user-select: none;
-khtml-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
color: #000;
}
.fsslider {
text-align: center;
line-height: 8px;
font-size: 8px;
font-family: "Lucida Grande", "Trebuchet MS";
}
.fsslider > * {
position: absolute;
top: 50%;
cursor: pointer;
}
.fsslider > .fsfull-value, .fsslider > .fssel-value {
margin-top: -1px;
height: 2px;
left: 0;
right: 0;
}
.fsslider > .fsfull-value {
width: 100%;
background: #d8d8d8;/*complement of selected area*/
}
.fsslider > .fssel-left, .fsslider > .fssel-right, .fsslider > .fscaret {
background: #fff;/*buttons*/
box-shadow: 1px 1px 3px rgba(0,0,0,0.2);
-moz-box-shadow: 1px 1px 3px rgba(0,0,0,0.2);
-webkit-box-shadow: 1px 1px 3px rgba(0,0,0,0.2);
height: 100%;
min-width: 15px;
top: 0;
padding-left: 5px;
padding-right: 5px;
}
.fsslider > .fssel-value {
/*background: #ff7c19;*/
background: #27c470;/*selected area*/
height: 4px;
margin-top: -2px;
right: 50%;
}
.fsslider.fsdisabled {
color: #c8c8c8;
}
.fsslider.fsdisabled > .fssel-value {
background: #c8c8c8;
}
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