[DOCKER] Install : OK. Needs only 03-Run fix and port fix.

install/01-setup

+```
+#!bin/bash
+#name:01-setup
+echo "****************SETUP**************************";
+for dir in "/srv/gargantext_lib" "/srv/gargantext_static" "/srv/gargantext_media"; do
+    sudo mkdir -p $dir ;
+    sudo chown gargantua:gargantua $dir ;
+done;
+sudo wget http://dl.gargantext.org/gargantext_lib.tar.bz2 \
+&& sudo tar xvjf gargantext_lib.tar.bz2 -o /srv/gargantext_lib \
+&& sudo chown -R gargantua:gargantua /srv/gargantext_lib \
+&& echo ":::::::::::::::::Done::::::::::::::::::::::::::";
+#TODO clone the repo into /srv/gargantext/ and reduce the different steps
+#git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
+#        && cd /srv/gargantext \
+#        && git fetch origin stable \
+#        && git checkout stable \
+
+```

install/02-config

+#!/bin/bash
+#configure the base image gargamelle
+echo '****************BUILD**********************************'
+docker build -t gargamelle:latest ./gargamelle
+
+#2 option with this image:
+    # configure the container
+    # run the image with the app in it
+echo '::::::::::::::::::::GARGAMELLE IMAGE BUILT:::::::::::::'
+echo '*************CONFIG************************************'
+
+
+sudo docker run \
+        -v /srv/:/srv/ \
+        -p 8000 \
+        -p 5432 \
+        -it gargamelle:latest \
+        /bin/bash -c "/srv/gargantext/install/gargamelle/psql_configure.sh"
+
+sudo docker rm -f `docker ps -a | grep -v CONTAINER | awk '{print $1 }'`
+
+sudo docker run \
+        -v /srv/:/srv/ \
+        -p 8000 \
+        -p 5432 \
+        -it gargamelle:latest \
+        /bin/bash -c "/srv/gargantext/install/gargamelle/django_configure.sh"
+
+sudo docker rm -f `docker ps -a | grep -v CONTAINER awk '{print $1 }'`

install/03-run

+#!/bin/bash
+
+
+
+
+sudo docker run \
+        -v /srv/:/srv/\
+        -p 8000 \
+        -p 5432 \
+        -it gargamelle:latest \
+#        /bin/bash -c "service postgresql start; su gargantua -c \'source /env_3-5/bin/activate && /srv/gargantext/manage.py runserver 0.0.0.0:8000\'"
+
+
+

install/MIGRATION.md

-# Migration from Gargantext < 3.0.0 versions towards >= 3.*
-
-## Installation
-
-First, install Python 3.5 (see https://www.python.org/downloads/ for
-download links).
-
-```bash
-cd /tmp
-wget https://www.python.org/ftp/python/3.5.1/Python-3.5.1.tar.xz
-tar xvfJ Python-3.5.1.tar.xz
-cd Python-3.5.1
-./configure
-make -j4 # option is for multithreading
-sudo make install
-```
-
-Other components are required:
-
-```bash
-sudo pip3.5 install virtualenv
-sudo apt-get install rabbitmq-server
-```
-
-Then build a virtual environment:
-
-```bash
-virtualenv-3.5 VENV
-source VENV/bin/activate
-pip3.5 install git+https://github.com/zzzeek/sqlalchemy.git@rel_1_1
-pip3.5 install -U -r requirements.txt
-```
-
-
-## Migrate database
-
-### Django models
-
-```bash
-./manage.py makemigrations
-./manage.py migrate --fake-initial
-```
-
-...or if it fails, try the commandes below:
-
-```bash
-./manage.py makemigrations
-./manage.py migrate --run-syncdb
-```
-
-(see [Django documentation](https://docs.djangoproject.com/en/1.9/topics/migrations/))
-
-### SQLAlchemy models
-
-```bash
-./dbmigrate.py
-```
-
-
-## Start the Django server
-
-```bash
-./manage.py celeryd --loglevel=INFO # to ensure Celery is properly started
-./manage.py runserver
-```

install/README.md

-#Install Instructions for Gargantext (CNRS):
-
-## Get the source code
-by cloning gargantext into /srv/gargantext
-
-``` bash
-git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
-        && cd /srv/gargantext \
-        && git fetch origin stable \
-        && git checkout stable \
-```
-
-
-The folder will be /srv/gargantext:
-* docs containes all informations on gargantext
-    /srv/gargantext/docs/
-* install contains all the installation files
-    /srv/gargantext/install/
-
-Help needed ?
-See [http://gargantext.org/about](http://gargantext.org/about) and [tools](./contribution_guide.md) for the community
-
-Two installation procedure are provided:
-
-1. Semi-automatic installation  [EASY]
-2. Step by step installation     [ADVANCED]
-
-Here only semi-automatic installation is covered checkout [manual_install](manual_install.md)
-to follow step by step procedure
-
-
-##Prerequisites
-## Init Setup
-## Install
-## Run
-
---------------------
-
-# Semi automatic installation
-All the procedure files are located into /srv/garantext/install/
-``` bash
-user@computer:$ cd /srv/garantext/install/
-```
-
-## Prerequisites
-
-* A Debian based OS >= [FIXME]
-
-* At least 35GO in /srv/ [FIXME]
-    todo: reduce the size of gargantext lib
-    todo: remove lib once docker is configured
-
-! tip: if you have enought space for the full package you can:
-        * resize your partition
-        * make a simlink on gargantext_lib
-
-
-
-
-##Init Setup
-Prepare your environnement and make the initial setup.
-
-This initial step creates a user for gargantext plateform along with dowloading additionnal libs and files.
-
-It also install docker and build the docker image and build the gargantext box
-
-``` bash
-user@computer:/srv/garantext/install/$ .init.sh
-```
-
-
-### Install
-Once the init step is done
-
-* Enter into the docker environnement
-
-Inside folder /srv/garantext/install/
-enter the gargantext image
-``` bash
-user@computer:/srv/garantext/install/$ .docker/enterGargantextImage
-```
-go to the installation folder
-``` bash
-root@dockerimage8989809:$ cd /srv/gargantext/install/
-```
-    [ICI] Tester si les config de postgresql et python sont faits en amont à la création du docker file
-
-* Install Python environment
-
-
-``` bash
-root@dockerimage8989809:/srv/garantext/install/$ python/configure
-```
-* Configure PostgreSql
-
-Inside the docker image, execute as root:
-``` bash
-root@computer:/srv/garantext/install/$ postgres/configure
-```
-    [Si OK ] enlever ses lignes
-
-Install Gargantext server
-
-*  Configure the database
-Inside the docker container:
-``` bash
-service postgresql start
-#su gargantua
-#activate the virtualenv
-source /srv/env_3-5/bin/activate
-```
-You have entered the virtualenv as shown with (env_3-5)
-``` bash
-(env_3-5) $ python /srv/gargantext/dbmigrate.py
-(env_3-5) $  /srv/gargantext/manage.py makemigrations
-(env_3-5) $  /srv/gargantext/manage.py migrate
-(env_3-5) $  python /srv/gargantext/dbmigrate.py
-#will create tables and not hyperdata_nodes
-(env_3-5) $  python /srv/gargantext/dbmigrate.py
-#will create table hyperdata_nodes
-#launch first time the server to create first user
-(env_3-5) $ /srv/gargantext/manage.py runserver 0.0.0.0:8000
-(env_3-5) $  /srv/gargantext/init_accounts.py /srv/gargantext/install/init/account.csv
-```
-
-    FIXME: dbmigrate need to launched several times since tables are
-    ordered with alphabetical order (and not dependencies order)
-
-* Exit the docker
-```
-exit (or Ctrl+D)
-```
-
-
-
-## Run Gargantext
-
-Enter the docker container:
-``` bash
-/srv/gargantext/install/docker/enterGargantextImage
-```
-Inside the docker container:
-``` bash
-#start Database (postgresql)
-service postgresql start
-#change to user
-su gargantua
-#activate the virtualenv
-source /srv/env_3-5/bin/activate
-#go to gargantext srv
-(env_3-5) $ cd /srv/gargantext/
-#run the server
-(env_3-5) $ /manage.py runserver 0.0.0.0:8000
-```
-Keep it open and  outside the docker launch browser
-
-``` bash
-chromium http://127.0.0.1:8000/
-```
-
-* Click on Test Gargantext
-```
-Login : gargantua
-Password : autnagrag
-```
-Enjoy :)
-
-See [User Guide](/demo/tuto.md) for quick usage example
-
-

install/debian/README_Debian.md

-#!/bin/dash
-
-# TODO do apt-get install --force-yes --force-yes 
-
-#postgresql3.4-server-dev
-#+libxml2-dev
-
-sudo apt-get install --force-yes postgresql
-sudo apt-get install --force-yes postgresql-contrib
-sudo apt-get install --force-yes rabbitmq-server
-sudo apt-get install --force-yes tmux
-sudo apt-get install --force-yes uwsgi uwsgi-plugin-python3
-
-#apt-get install --force-yes python-virtualenv
-
-sudo apt-get install --force-yes libpng12-dev
-sudo apt-get install --force-yes libpng-dev
-sudo apt-get install --force-yes libfreetype6-dev
-sudo apt-get install --force-yes python-dev
-sudo apt-get install --force-yes libpq-dev
-sudo apt-get install --force-yes libpq-dev
-
-#apt-get build-dep python-matplotlib
-#apt-get install --force-yes python-matplotlib
-
-#Paquets Debian a installer
-# easy_install --force-yes -U distribute (matplotlib)
-#lxml
-sudo apt-get install --force-yes libffi-dev
-sudo apt-get install --force-yes libxml2-dev
-sudo apt-get install --force-yes libxslt1-dev
-
-# ipython readline
-sudo apt-get install --force-yes libncurses5-dev
-sudo apt-get install --force-yes pandoc
-
-# scipy:
-sudo apt-get install --force-yes gfortran
-sudo apt-get install --force-yes libopenblas-dev
-sudo apt-get install --force-yes liblapack-dev
-
-#nlpserver
-sudo apt-get install --force-yes libgflags-dev
-sudo apt-get install --force-yes libgoogle-glog-dev
-
-# MElt
-# soon
-
-## SERVER Configuration
-
-# server configuration
-sudo apt-get install --force-yes nginx
-
-# UWSGI with pcre support
-sudo apt-get install --force-yes libpcre3 libpcre3-dev
-sudo apt-get install --force-yes python3-pip
-#pip3 install --force-yes uwsgi
-

install/debian/asGargantua.sh

-#!/bin/bash
-
-##MAINTAINER ISCPIF <alexandre.delanoe@iscpif.fr>
-#
-#git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
-#	&& cd /srv/gargantext \
-#	&& git fetch origin refactoring-alex \
-#	&& git checkout refactoring-alex
-#
-#cd /srv/gargantext/install \
-#   && /usr/bin/virtualenv --py=/usr/bin/python3.5 /srv/env_3-5 \
-#   && /bin/bash -c 'source /srv/env_3-5/bin/activate' \
-#   && /bin/bash -c '/srv/env_3-5/bin/pip install git+https://github.com/zzzeek/sqlalchemy.git@rel_1_1' \
-#   && /bin/bash -c '/srv/env_3-5/bin/pip install -r /srv/gargantext/install/python/requirements.txt' \
-#
-
-## INSTALL MAIN DEPENDENCIES
-
-cd /tmp && wget http://dl.gargantext.org/gargantext_lib.tar.bz2 \
-     && tar xvjf gargantext_lib.tar.bz2 -o /srv/gargantext_lib \
-     && chown -R gargantua:gargantua /srv/gargantext_lib
-
-## End of configuration
-## be sure that postgres is running
-#cd /srv/gargantext && /bin/bash -c 'source /srv/bin/env_3-5/bin/activate' \
-#    && /srv/gargantext/manage.py shell < /srv/gargantext/init.py
-#
-
-echo "Gargantua: END of the installation of Gargantext"
-

install/debian/asPostgres.sh

-#!/bin/bash
-
-# ## CONFIGURE POSTGRESQL
-
-psql -c "CREATE user gargantua WITH PASSWORD 'C8kdcUrAQy66U'" && createdb -O gargantua gargandb
-

install/debian/asRoot.sh

-#!/bin/bash
-
-#MAINTAINER ISCPIF <alexandre.delanoe@iscpif.fr>
-
-apt-get update && \
-apt-get install -y \
-apt-utils ca-certificates locales \
-sudo aptitude gcc g++ wget git postgresql-9.5 vim
-
-### Configure timezone and locale
-echo "Europe/Paris" > /etc/timezone && \
-   dpkg-reconfigure -f noninteractive tzdata && \
-   sed -i -e 's/# en_GB.UTF-8 UTF-8/en_GB.UTF-8 UTF-8/' /etc/locale.gen && \
-   sed -i -e 's/# fr_FR.UTF-8 UTF-8/fr_FR.UTF-8 UTF-8/' /etc/locale.gen && \
-   echo 'LANG="fr_FR.UTF-8"' > /etc/default/locale && \
-   dpkg-reconfigure --frontend=noninteractive locales && \
-   update-locale LANG=fr_FR.UTF-8
-
-
-## PROD VERSION OF GARGANTEXT
-# apt-get install -y uwsgi nginx  uwsgi-plugin-python rabbitmq-server
-
-
-### CREATE USER and adding it to sudo
-## USER gargantua cannot not connect with password but SSH key
-adduser --disabled-password --gecos "" gargantua \
-   && adduser gargantua sudo \
-   && echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers 
-
-# addgroup gargantext here with specific users
-
-## Install Database, main dependencies and Python
-## (installing some Debian version before pip to get dependencies)
-apt-get update && apt-get install -y \
-   postgresql-server-dev-9.5 libpq-dev libxml2 \
-   libxml2-dev xml-core libgfortran-5-dev \
-   virtualenv python3-virtualenv \
-   python3.4 python3.4-dev \
-   python3.5 python3.5-dev \
-   python3-six python3-numpy python3-setuptools \ # for numpy, pandas
-   python3-numexpr \                              # for numpy performance
-   libxml2-dev libxslt-dev                        # for lxml
-
-
-#if [[ -e "/srv/gargantext" ]]
-#rm -rf /srv/gargantext /srv/env_3-5
-
-for dir in "/srv/gargantext"\
-           "/srv/gargantext_lib"\
-           "/srv/gargantext_static"\
-           "/srv/gargantext_media"\
-           "/srv/env_3-5"\
-           "/var/www/gargantext"; do \
-    mkdir $dir
-    chown gargantua:gargantua $dir
-done
-
-echo "Root: END of the installation of Gargantext by Root."
-

install/docker/config/build

-#!/bin/bash
-
-#######################################################################
-#    ____             _
-#   |  _ \  ___   ___| | _____ _ __
-#   | | | |/ _ \ / __| |/ / _ \ '__|
-#   | |_| | (_) | (__|   <  __/ |
-#   |____/ \___/ \___|_|\_\___|_|
-#
-######################################################################
-
-sudo docker build -t gargantext .
-# OR Get the ID of your container
-#ID=$(docker build .) && docker run -i -t $ID
-# OR
-# cd /tmp
-# wget http://dl.gargantext.org/gargantext_docker_image.tar \
-# && sudo docker import - gargantext:latest < gargantext_docker_image.tar
-
-
-
-
-
-
-

install/docker/config/database/database.yml

-default: &default
-  adapter: postgresql
-  encoding: unicode
-  pool: 5
-  host: postgres
-  port: 5432
-  username: gargantex
-  password: gargantex
-
-development:
-  database: gargantex_dev
-
-test:
-  database: gargantext_test

install/docker/config/docker-compose.yml

-postgres:
-  image: "postgres:9.5"
-  volumes_from:
-    - data
-  expose:
-    - 5432
-  environment:
-    POSTGRES_PASSWORD: gargantext
-    POSTGRES_USER: gargantua
-web:
-  command: python manage.py runserver 0.0.0.0:8000
-  build: .
-  volumes:
-      - .:/srv/
-    ports:
-      - "8000:8000"
-    depends_on:
-      - db
-  build: .
-  ports:
-    - "3000:3000"
-  links:
-    - postgres
-  volumes:
-    - ../:/srv/
-  volumes_from:
-    - data
-  environment:
-    HOST: 0.0.0.0
-    PORT: 3000
-    
-data:
-  image: gargantext
-  command: echo 'Data Container for PostgreSQL and Initial Data'
-  volumes:
-    - /var/lib/postgresql/data
-    - /bundler

install/docker/config/export.sh

-#!/bin/bash
-
-sudo docker export $(sudo docker ps -l | awk '{print $1}' | grep -v CONTAINER | head -n 1) > /tmp/gargantext_docker_image.tar
-
-# To import the docker
-#sudo docker import - gargantext:latest < data.tar
-#sudo cat data.tar | docker import - gargantext
-

install/docker/docker-compose.yml

-postgres:
-  image: "postgres:9.4"
-  volumes_from:
-    - data
-  expose:
-    - 5432
-  environment:
-    POSTGRES_PASSWORD: gargantext
-    POSTGRES_USER: gargantua
-web:
-  build: .
-  ports:
-    - "3000:3000"
-  links:
-    - postgres
-  volumes:
-    - ../:/app/
-  volumes_from:
-    - data
-  environment:
-    HOST: 0.0.0.0
-    PORT: 3000
-    
-data:
-  image: cogniteev/echo
-  command: echo 'Data Container for PostgreSQL and Bundler'
-  volumes:
-    - /var/lib/postgresql/data
-    - /bundler

install/docker/enterGargantextImage

-#!/bin/bash
-
-
-sudo docker run -i -p 8000:8000 \
-                   -v /srv:/srv \
-                   -t gargantext:latest \
-                   /bin/bash
-

install/docker/install.sh

-#!/bin/bash
-
-# Main user of Gargantext is Gargantua (role of Pantagruel soon)!
-#sudo adduser --disabled-password --gecos "" gargantua
-
-#######################################################################
-#    ____             _             
-#   |  _ \  ___   ___| | _____ _ __ 
-#   | | | |/ _ \ / __| |/ / _ \ '__|
-#   | |_| | (_) | (__|   <  __/ |   
-#   |____/ \___/ \___|_|\_\___|_|   
-#                                   
-######################################################################
-
-sudo docker build -t gargantext .
-# OR
-# cd /tmp
-# wget http://dl.gargantext.org/gargantext_docker_image.tar \
-# && sudo docker import - gargantext:latest < gargantext_docker_image.tar
-
-function do_cker {
-    #sudo docker run -d -p 8000:8000 \
-    sudo docker run -d \
-                   -v /srv2:/srv \
-                   -v /home/alexandre:/home/alexandre \
-                   -t gargantext:latest \
-                   /bin/bash $1
-    }
-
-
-#######################################################################
-#    _____     _     _               
-#   |  ___|__ | | __| | ___ _ __ ___ 
-#   | |_ / _ \| |/ _` |/ _ \ '__/ __|
-#   |  _| (_) | | (_| |  __/ |  \__ \
-#   |_|  \___/|_|\__,_|\___|_|  |___/
-#                                    
-#######################################################################
-
-### Create directories in /srv
-# Linux only
-function create_folders {
-    for dir in "/srv/gargantext"\
-            "/srv/gargantext_lib"\
-            "/srv/gargantext_static"\
-            "/srv/gargantext_media"\
-            "/srv/gargantext_data"\
-            "/srv/env_3-5"; do \
-    sudo mkdir -p $dir ;\
-    sudo chown gargantua:gargantua $dir ; \
-done;\
-sudo chown -R postgres:postgres /srv/gargantext_data/ 
-}
-
-#do_cker "create_folders"
-
-#NOPE
-function git_config {
-    ### TODO (soon) : git clone https://gogs.iscpif.fr/gargantext.git
-    git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
-        && cd /srv/gargantext \
-        && git fetch origin refactoring \
-        && git checkout refactoring
-}
-
-#su gargantua -c git_config #NOPE
-
-#######################################################################
-##    ____           _                      
-##   |  _ \ ___  ___| |_ __ _ _ __ ___  ___ 
-##   | |_) / _ \/ __| __/ _` | '__/ _ \/ __|
-##   |  __/ (_) \__ \ || (_| | | |  __/\__ \
-##   |_|   \___/|___/\__\__, |_|  \___||___/
-##                      |___/               
-#######################################################################
-#NOPE
-function postgres_config {
-    /usr/lib/postgresql/9.5/bin/initdb -D /srv/gargantext_data/
-}
-#do_cker "su postgres -c postgres_config"
-
-function postgres_create_db {
-    sudo /etc/init.d/postgresql start \
-     && psql -c "CREATE user gargantua WITH PASSWORD 'C8kdcUrAQy66U'" \
-     && createdb -O gargantua gargandb \
-     && echo "Root: END of the installation of Gargantexts Database by postgres."
-} 
-#do_cker postgres_create_db 
-
-#######################################################################
-##    _     _ _               _      _           
-##   | |   (_) |__  _ __ __ _(_)_ __(_) ___  ___ 
-##   | |   | | '_ \| '__/ _` | | '__| |/ _ \/ __|
-##   | |___| | |_) | | | (_| | | |  | |  __/\__ \
-##   |_____|_|_.__/|_|  \__,_|_|_|  |_|\___||___/
-##                                               
-#######################################################################
-#
-#######################################################################
-### INSTALL MAIN DEPENDENCIES
-#######################################################################
-###
-#### Installing pip version of python libs
-#
-function install_python_env {
-    /usr/bin/virtualenv --py=/usr/bin/python3.5 /srv/env_3-52 \
-    && /bin/bash -c 'source /srv/env_3-52/bin/activate' \
-    && /bin/bash -c '/srv/env_3-52/bin/pip install git+https://github.com/zzzeek/sqlalchemy.git@rel_1_1' \
-    && /bin/bash -c '/srv/env_3-52/bin/pip install -r /srv/gargantext/install/python/requirements.txt'
-}
-
-#do_cker "su gargantua -c install_python_env"
-
-#######################################################################
-function init_gargantext {
-    echo "TODO script pour peupler la base"
-}
-
-#do_cker "su gargantua -c init_gargantext"
-#######################################################################
-### GET CONFIG FILES
-
-function get_libs {
-    wget http://dl.gargantext.org/gargantext_lib.tar.bz2 \
-     && tar xvjf gargantext_lib.tar.bz2 -o /srv/gargantext_lib \
-     && sudo chown -R gargantua:gargantua /srv/gargantext_lib \
-     && echo "Libs installed"
-    }
-
-#do_cker get_libs
-

install/docker/config/Dockerfile → install/gargamelle/Dockerfile

 ###########################################################
-#     ____             ____           _____   __  ___     #
-#    / ___| __ _ _ __ / ___| __ _ _ _|_   _|__\ \/ / |_   #
-#   | |  _ / _` | '__| |  _ / _` | '_ \| |/ _ \\  /| __|  #
-#   | |_| | (_| | |  | |_| | (_| | | | | |  __//  \| |_   #
-#    \____|\__,_|_|   \____|\__,_|_| |_|_|\___/_/\_\\__|  #
-#                                                         #
+# Gargamelle WEB
 ###########################################################
-
-######################################################################
 #Build an image starting with debian:stretch image
+# wich contains all the source code of the app
 FROM debian:stretch
-MAINTAINER ISCPIF <alexandre.delanoe@iscpif.fr>
-######################################################################
-#Add the current image into /srv/
-ADD . /srv/
-#Set the working directory to /srv
-WORKDIR /srv/
-#Install the debian dependencies
-#as root
+MAINTAINER ISCPIF <gargantext@iscpif.fr>
+# Configure global ENV with deb dependencies
+# Configure local ENV requirements
+########################################################################
+
+ENV DEBIAN_FRONTEND noninteractive
+
 USER root
-#declare 2 environnement
-ENV GG_ROOT /srv/gargantext
-ENV PYTHON_ENV  /srv/env_3-5
 
+### Update and install base dependencies
 RUN apt-get update && \
     apt-get install -y \
     apt-utils ca-certificates locales \
-    python3-dev \
-    sudo aptitude gcc g++ wget git postgresql-9.5 vim \
-    build-essential make
+    sudo aptitude gcc g++ wget git vim \
+    build-essential make \
+    postgresql-9.5 postgresql-client-9.5 postgresql-contrib-9.5 \
+    postgresql-server-dev-9.5 libpq-dev libxml2 \
+    postgresql-9.5 postgresql-client-9.5 postgresql-contrib-9.5
 
+
+RUN echo "############ DEBIAN LIBS ###############"
 ### Configure timezone and locale
 RUN echo "Europe/Paris" > /etc/timezone && \
     dpkg-reconfigure -f noninteractive tzdata && \
@@ -39,43 +34,54 @@ RUN echo "Europe/Paris" > /etc/timezone && \
     dpkg-reconfigure --frontend=noninteractive locales && \
     update-locale LANG=fr_FR.UTF-8
 
-### Install Database, main dependencies and Python
-### (installing some Debian version before pip to get dependencies)
+RUN echo "###########  LOCALES & TZ #################"
+### Install main dependencies and python packages based on Debian distrib
 RUN apt-get update && apt-get install -y \
-        postgresql-server-dev-9.5 libpq-dev libxml2 \
         libxml2-dev xml-core libgfortran-5-dev \
-        virtualenv python3-virtualenv \
+        libpq-dev \
         python3.5 \
+        python3-dev \
         python3-six python3-numpy python3-setuptools \
-        # ^for numpy, pandas
+        # ^for numpy, pandas and numpyperf
         python3-numexpr \
-        # ^ for numpy performance
+        #python dependencies
+        python3-pip \
+        # for lxml
         libxml2-dev libxslt-dev
-        # ^ for lxml
         #libxslt1-dev zlib1g-dev
+RUN echo "############# PYTHON DEPENDENCIES ###############"
+#UPDATE AND CLEAN
+RUN apt-get update && apt-get autoclean &&\
+    rm -rf /var/lib/apt/lists/*
+#NB: removing /var/lib will avoid to significantly fill up your /var/ folder on your native system
+
+########################################################################
+### PYTHON ENVIRONNEMENT (as ROOT)
+########################################################################
 
-RUN apt-get install -qy python3.5
-RUN apt-get install -qy python3-pip
-RUN python3-pip install -r /srv/gargantex/install/python/requirements.txt
+RUN adduser --disabled-password --gecos "" gargantua
 
-### PROD VERSION OF GARGANTEXT ONLY
-#RUN apt-get install -y uwsgi nginx  uwsgi-plugin-python rabbitmq-server
+RUN pip3 install virtualenv
+RUN virtualenv /env_3-5
+RUN echo 'alias venv="source /env_3-5/bin/activate"' >> ~/.bashrc
+# CONFIG FILES
+ADD requirements.txt /
+ADD psql_configure.sh /
+ADD django_configure.sh /
 
-## CREATE USER and adding it to sudo >> docker-compose build
-## TODO ask user for password
-#RUN adduser --disabled-password --gecos "" gargantua
+RUN . /env_3-5/bin/activate; pip3 install -r requirements.txt; \
+    pip3  install git+https://github.com/zzzeek/sqlalchemy.git@rel_1_1; \
+    python3 -m nltk.downloader averaged_perceptron_tagger;
 
-#RUN apt-get install -y sudo && adduser gargantua sudo \
-#     && echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
+RUN chown gargantua:gargantua -R /env_3-5
 
+########################################################################
+### POSTGRESQL DATA (as ROOT)
+########################################################################
 
-#######################################################################
-### CONFIGURE POSTGRESQL
-#######################################################################
-#in docker database
-#RUN sed -iP 's%^data_directory.*%data_directory = '\/srv\/gargantext_data'%' /etc/postgresql/9.5/main/postgresql.conf
-######################################################################
+RUN sed -iP "s%^data_directory.*%data_directory = \'\/srv\/gargandata\'%" /etc/postgresql/9.5/main/postgresql.conf
+RUN echo "host all  all    0.0.0.0/0  md5" >> /etc/postgresql/9.5/main/pg_hba.conf
+RUN echo "listen_addresses='*'" >> /etc/postgresql/9.5/main/postgresql.conf
 
-#INSTALLATION AND CONFIG python and postgresql module
-COPY  . /install
-CMD [./install/python/configure, ./install/postgres/configure]
+EXPOSE 5432 8000
+VOLUME ["/srv/",]

install/gargamelle/build.sh

+#!/bin/bash
+#configure the base image gargamelle
+docker build -t gargamelle:latest ./gargamelle
+#2 option with this image:
+    # configure the container
+    # run the image with the app in it
+
+

install/gargamelle/configure.sh

+#!/bin/bash
+
+PATH="/srv/gargantext/install/gargamelle"
+#./folders_configure.sh;
+#./psql_configure.sh;
+/bin/bash "$PATH/django_configure.sh"; 
+/bin/bash -c "Configuration Ok""

install/gargamelle/django_configure.sh

+#!/bin/bash
+##################################################
+#             __| |(_) __ _ _ __   __ _  ___
+#            / _` || |/ _` | '_ \ / _` |/ _ \
+#           | (_| || | (_| | | | | (_| | (_) |
+#            \__,_|/ |\__,_|_| |_|\__, |\___/
+#                 |__/             |___/
+##################################################
+#configure django migrations
+##################################################
+
+
+
+echo "Starting Postgres"
+/usr/sbin/service postgresql start
+
+/bin/su gargantua -c 'source /env_3-5/bin/activate \
+    && ./srv/gargantext/manage.py makemigrations \
+    && ./srv/gargantext/manage.py migrate \
+    && ./srv/gargantext/dbmigrate.py \
+    && ./srv/gargantext/dbmigrate.py \
+    && ./srv/gargantext/dbmigrate.py;'
+
+/usr/sbin/service postgresql stop

install/gargamelle/folders_configure.sh

+#!/bin/bash
+
+chown -R gargantua:gargantua /srv/gargantext
+

install/postgres/configure → install/gargamelle/psql_configure.sh

 #!/bin/bash
 
 #######################################################################
-##    ____           _                      
-##   |  _ \ ___  ___| |_ __ _ _ __ ___  ___ 
+##    ____           _
+##   |  _ \ ___  ___| |_ __ _ _ __ ___  ___
 ##   | |_) / _ \/ __| __/ _` | '__/ _ \/ __|
 ##   |  __/ (_) \__ \ || (_| | | |  __/\__ \
 ##   |_|   \___/|___/\__\__, |_|  \___||___/
-##                      |___/               
+##                      |___/
 #######################################################################
 
-su postgres -c 'pg_dropcluster 9.4 main --stop'
-#rm -rf /srv/gargantext_data && mkdir /srv/gargantext_data && chown postgres:postgres /srv/gargantext_data
-su postgres -c '/usr/lib/postgresql/9.5/bin/initdb -D /srv/gargantext_data/'
-su postgres -c '/usr/lib/postgresql/9.5/bin/pg_ctl -D /srv/gargantext_data/ -l journal_applicatif start'
+service postgresql stop
 
-#su postgres -c 'pg_createcluster -D /srv/gargantext_data 9.5 main '
-#su postgres -c 'pg_ctlcluster -D /srv/gargantext_data 9.5 main start '
-#su postgres -c 'pg_ctlcluster 9.5 main start'
+su postgres -c 'pg_dropcluster 9.5 main --stop'
+#done in docker but redoing it
+
+if [[ -e "/srv/gargandata" ]]; then
+    rm -rf /srv/gargandata/*
+else
+    mkdir /srv/gargandata;
+    chown -R postgres:postgres /srv/gargandata
+fi
+
+su postgres -c '/usr/lib/postgresql/9.5/bin/initdb -D /srv/gargandata/'
+su postgres -c '/usr/lib/postgresql/9.5/bin/pg_ctl -D /srv/gargandata/ -l journal_applicatif start'
+
+
+#su postgres -c 'pg_createcluster -D /srv/gargandata 9.5 main '
+#su postgres -c 'pg_ctlcluster -D /srv/gargandata 9.5 main start '
 
 service postgresql start
 
@@ -24,5 +34,4 @@ su postgres -c "psql -c \"CREATE user gargantua WITH PASSWORD 'C8kdcUrAQy66U'\""
 su postgres -c "createdb -O gargantua gargandb"
 
 echo "Postgres configured"
-
-
+service postgresql stop

install/python/requirements.txt → install/gargamelle/requirements.txt

@@ -29,5 +29,8 @@ networkx==1.11
 pandas==0.18.0
 six==1.10.0
 lxml==3.5.0
+requests-futures==0.9.7
 bs4==0.0.1
 requests==2.10.0
+#testing github
+#-e git://github.com/zzzeek/sqlalchemy.git@rel_1_1

install/init.sh

-#!/bin/bash
-echo "Adding user gargantua";
-sudo adduser --disabled-password --gecos "" gargantua;
-echo "Creating the environnement into /srv/";
-for dir in "/srv/gargantext" "/srv/gargantext_lib" "/srv/gargantext_static" "/srv/gargantext_media""/srv/env_3-5"; do
-    sudo mkdir -p $dir ;
-    sudo chown gargantua:gargantua $dir ;
-done;
-echo "Downloading the libs. Please be patient!";
-wget http://dl.gargantext.org/gargantext_lib.tar.bz2 \
-&& tar xvjf gargantext_lib.tar.bz2 -o /srv/gargantext_lib \
-&& sudo chown -R gargantua:gargantua /srv/gargantext_lib \
-&& echo "Libs installed";
-echo 'Install docker'
-sudo apt-get install -y docker-engine
-echo 'Build gargantext image'
-cd /srv/gargantext/install/
-./docker/config/build
-
-
-
-#Next steps
-#install and configure git
-#sudo apt-get install -y git
-#clone your SSH key
-#cp ~/.ssh/id_rsa.pub id_rsa.pub
-#clone the repo
-#~ git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
-        #~ && cd /srv/gargantext \
-        # get on branch
-        #~ && git fetch origin unstable \
-        #~ && git checkout unstable \
-#~ echo "Currently on /srv/gargantext unstable branch";
-#create your own branch
-# git checkout -b my-unstable
-

install/init/account.csv

-gargantua,contact@gargantext,autnagrag,

install/install.sh

-#!/usr/bin/bash
-echo "Adding user gargantua";
-sudo adduser --disabled-password --gecos "" gargantua;
-echo "Creating the environnement into /srv/";
-for dir in "/srv/gargantext" "/srv/gargantext_lib" "/srv/gargantext_static" "/srv/gargantext_media""/srv/env_3-5"; do
-    sudo mkdir -p $dir ;
-    sudo chown gargantua:gargantua $dir ;
-done;
-echo "Downloading the libs";
-wget http://dl.gargantext.org/gargantext_lib.tar.bz2 \
-&& tar xvjf gargantext_lib.tar.bz2 -o /srv/gargantext_lib \
-&& sudo chown -R gargantua:gargantua /srv/gargantext_lib \
-&& echo "Libs installed";
-#cp ~/.ssh/id_rsa.pub id_rsa.pub
-echo "Cloning the repo";
-git clone ssh://gitolite@delanoe.org:1979/gargantext /srv/gargantext \
-        && cd /srv/gargantext \
-        && git fetch origin refactoring \
-        && git checkout refactoring \
-echo "Currently on /srv/gargantext refactoring branch";

install/postgres/indexes.sql

---                       ____ 
---                      / ___|
---                     | |  _ 
---                     | |_| |
---                      \____|arganTexT
-----------------------------------------------------------------------
---                  Gargantext optimization of Database             --
-----------------------------------------------------------------------
-
---> Manual optimization with indexes according to usages
--- Weakness and Strengths of indexes:
-    --> it can slow down the insertion(s)
-    --> it can speed up  the selection(s)
-
---> Conventions for this document:
-    --> indexes commented already have been created 
-    --> indexes not commented have not been created yet
-
-----------------------------------------------------------------------
--- Retrieve Nodes
-----------------------------------------------------------------------
--- create INDEX on nodes (user_id, typename, parent_id) ;
--- create INDEX on nodes_hyperdata (node_id, key);
--- create INDEX on ngrams (id, n) ;
--- create INDEX on ngrams (n) ;
--- create INDEX on nodes_ngrams (node_id, ngram_id) ;
--- create INDEX on nodes_ngrams (node_id) ;
--- create INDEX on nodes_ngrams (ngram_id) ;
--- create INDEX on nodes_ngrams_ngrams (node_id, ngram1_id, ngram2_id) ;
-
--- create INDEX on nodes_ngrams_ngrams (node_id) ;
--- create INDEX on nodes_ngrams_ngrams (ngram1_id) ;
--- create INDEX on nodes_ngrams_ngrams (ngram2_id) ;
-
-----------------------------------------------------------------------
--- DELETE optimization of Nodes -- todo on dev
--- create INDEX on nodes_nodes_ngrams (node1_id);
--- create INDEX on nodes_nodes_ngrams (node2_id);
-
--- create INDEX on nodes_nodes (node1_id, node2_id);
-
--- Maybe needed soon:
--- create INDEX on nodes_nodes_ngrams (node1_id, node2_id);
-----------------------------------------------------------------------
--- Analytics
-
--- create INDEX on nodes_hyperdata (node_id,value_utc);  -- remove ?
--- create INDEX on nodes_hyperdata (node_id,key,value_utc);
--- create INDEX on nodes_hyperdata (node_id,key,value_int);
--- create INDEX on nodes_hyperdata (node_id,key,value_flt);
--- create INDEX on nodes_hyperdata (node_id,key,value_str);
-
-----------------------------------------------------------------------
-----------------------------------------------------------------------
-
-create index on nodes using GIN (hyperdata);
-----------------------------------------------------------------------

install/python/configure

-#!/bin/bash
-
-ENV="/srv/env_3-5"
-
-/usr/bin/virtualenv --py=/usr/bin/python3.5 $ENV \
-&& /bin/bash -c "source ${ENV}/bin/activate" \
-&& /bin/bash -c "${ENV}/bin/pip install git+https://github.com/zzzeek/sqlalchemy.git@rel_1_1" \
-&& /bin/bash -c "${ENV}/bin/pip install -r /srv/gargantext/install/python/requirements.txt"

install/run_docker.md

-#!/usr/bin/bash
-#enter the Image
-/srv/gargantext/install/docker/enterGargantextImage
-#start postgresql
-service postgresql start
-#change to user
-su gargantua
-#activate the virtualenv
-source /srv/env_3-5/bin/activate
-#go to gargantext srv
-cd /srv/gargantext/manage.py runserver 0.0.0.0:8000

install/setup.sh

-#!/usr/bin/bash
-/srv/gargantext/install/docker/enterGargantextImage
-/srv/gargantext/install/python/configure
-/srv/gargantext/install/postgres/configure
-service postgresql start
-source /srv/env_3-5/bin/activate
-python /srv/gargantext/dbmigrate.py
-/srv/gargantext/manage.py makemigrations
-/srv/gargantext/manage.py migrate
-python /srv/gargantext/dbmigrate.py
-python /srv/gargantext/dbmigrate.py
-python /srv/gargantext/init_accounts.py /srv/gargantext/install/init/account.csv