[MERGE] fix conflicts.

gargantext/constants.py

@@ -102,7 +102,7 @@ INDEXED_HYPERDATA = {
 }
 
 
-from gargantext.util.taggers import EnglishMeltTagger, FrenchMeltTagger, TurboTagger
+from gargantext.util.taggers import FrenchMeltTagger, TurboTagger
 
 LANGUAGES = {
     'en': {

gargantext/models/nodes.py

@@ -101,13 +101,16 @@ class Node(Base):
         # session.add(self)
         # session.commit()
 
-    def children(self, typename=None):
+    def children(self, typename=None, order=None):
         """Return a query to all the direct children of the current node.
         Allows filtering by typename (see `constants.py`)
         """
         query = session.query(Node).filter(Node.parent_id == self.id)
         if typename is not None:
             query = query.filter(Node.typename == typename)
+
+        if order is not None:
+            query = query.order_by(Node.name)
         return query
 
     def add_child(self, **kwargs):

gargantext/models/users.py

@@ -32,7 +32,7 @@ class User(Base):
         )
         return query.all()
 
-    def nodes(self, typename=None):
+    def nodes(self, typename=None, order=None):
         """get all nodes belonging to the user"""
         from .nodes import Node
         query = (session
@@ -41,6 +41,10 @@ class User(Base):
         )
         if typename is not None:
             query = query.filter(Node.typename == typename)
+
+        if order is not None:
+            query = query.order_by(Node.name)
+
         return query
 
     def contacts_nodes(self, typename=None):

gargantext/util/generators/credits.py

@@ -33,13 +33,13 @@ _members = [
 
     { 'first_name' : 'Maziyar', 'last_name' : 'Panahi',
      'mail' : '',
-     'website'  : '',
+     'website'  : 'http://iscpif.fr',
      'picture' : 'maziyar.jpg',
      'role' : 'developer'},
 
     { 'first_name' : 'Romain', 'last_name' : 'Loth',
      'mail' : '',
-     'website'  : '',
+     'website'  : 'http://iscpif.fr',
      'picture' : 'romain.jpg',
      'role' : 'developer'},
 
@@ -47,7 +47,7 @@ _members = [
      'mail' : 'alexandre+gargantextATdelanoe.org',
      'website' : 'http://alexandre.delanoe.org',
      'picture' : 'alexandre.jpg',
-     'role' : 'principal investigator, developer'},
+     'role' : 'project manager'},
 
     #{ 'first_name' : '', 'name' : '', 'mail' : '', 'website' : '', 'picture' : ''},
     # copy-paste the line above and write your informations please

gargantext/views/pages/projects.py

@@ -36,7 +36,7 @@ def overview(request):
             session.commit()
 
     # list of projects created by the logged user
-    user_projects = user.nodes(typename='PROJECT')
+    user_projects = user.nodes(typename='PROJECT', order=True)
 
     # list of contacts of the logged user
     contacts_projects = list(user.contacts_nodes(typename='PROJECT'))
@@ -110,7 +110,7 @@ def project(request, project_id):
 
 
     # corpora within this project
-    corpora = project.children('CORPUS').all()
+    corpora = project.children('CORPUS', order=True).all()
     sourcename2corpora = defaultdict(list)
     for corpus in corpora:
         # we only consider the first resource of the corpus to determine its type

scrapers/istex.py

@@ -5,7 +5,7 @@ import threading
 from traceback                  import print_tb
 #from gargantext.settings import MEDIA_ROOT, BASE_DIR
 
-from django.shortcuts import redirect
+from django.shortcuts import redirect, render
 from django.http import Http404, HttpResponseRedirect, HttpResponseForbidden
 
 from gargantext.constants       import RESOURCETYPES, QUERY_SIZE_N_MAX
@@ -117,11 +117,7 @@ def save(request , project_id):
         )
 
 
-        session.add(corpus)
-        session.commit()
-        corpus_id = corpus.id
 
-        print("NEW CORPUS", corpus_id)
         tasks = Scraper()
 
         for i in range(8):
@@ -137,13 +133,15 @@ def save(request , project_id):
             if filename!=False:
                 # add the uploaded resource to the corpus
                 corpus.add_resource(
-                  type = 8     # cf. constants.RESOURCETYPES
+                  type = int(8)     # cf. constants.RESOURCETYPES
                 , path = filename
                                    )
                 dwnldsOK+=1
 
+        session.add(corpus)
         session.commit()
-        
+        corpus_id = corpus.id
+
         if dwnldsOK == 0 :
             return JsonHttpResponse(["fail"])
         ###########################
@@ -161,8 +159,15 @@ def save(request , project_id):
             # sanitize session after interrupted transact
             session.rollback()
             # --------------------------------------------
-        sleep(1)
-        return HttpResponseRedirect('/projects/' + str(project_id))
+
+        return render(
+            template_name = 'pages/projects/wait.html',
+            request = request,
+            context = {
+                'user'   : request.user,
+                'project': project,
+            },
+        )
 
 
     data = [query_string,query,N]

scrapers/pubmed.py

@@ -111,9 +111,6 @@ def save( request , project_id ) :
                                   , typename = "CORPUS"
                                   )
 
-        session.add(corpus)
-        session.commit()
-        corpus_id = corpus.id
         # """
         # urlreqs: List of urls to query.
         # - Then, to each url in urlreqs you do:
@@ -137,16 +134,21 @@ def save( request , project_id ) :
             print(filename)
             if filename != False:
                 # add the uploaded resource to the corpus
-                corpus.add_resource(
-                                    type = 3
+                corpus.add_resource( type = int(3)
                                    , path = filename
+                                   , url  = None
                                    )
+                print("Adding the resource")
                 dwnldsOK+=1
-        #session.commit()
+
+        session.add(corpus)
+        session.commit()
+        corpus_id = corpus.id
+
         if dwnldsOK == 0 :
             return JsonHttpResponse(["fail"])
         try:
-            scheduled(parse_extract_indexhyperdata(corpus_id))
+            scheduled(parse_extract_indexhyperdata)(corpus_id)
         except Exception as error:
             print('WORKFLOW ERROR')
             print(error)

static/js/gargantext/Docs_dyna_chart_and_table.js

@@ -278,9 +278,13 @@ function Main_test(Data) {
   var div_table = '<p align="right">'+"\n"
     div_table += '<table id="my-ajax-table" class="table table-bordered">'+"\n"
     div_table += "\t"+'<thead>'+"\n"
-    div_table += "\t"+"\t"+'<th width="100px;" data-dynatable-column="date">Date</th>'+"\n"
-    div_table += "\t"+"\t"+'<th data-dynatable-column="name">Title</th>'+"\n"
-    div_table += "\t"+"\t"+'<th data-dynatable-column="del" data-dynatable-no-sort="true">Trash</th>'+"\n"
+    div_table += "\t"+"\t"+'<th width="100px;" data-dynatable-column="date">'+"\n"
+    div_table += "\t"+"\t"+'<span class="glyphicon glyphicon-calendar" aria-hidden="true"></span> Date</th>'+"\n"
+    div_table += "\t"+"\t"+'<th data-dynatable-column="name">'+"\n"
+    div_table += "\t"+"\t"+'<span class="glyphicon glyphicon-text-size" aria-hidden="true"></span> Title</th>'+"\n"
+    div_table += "\t"+"\t"+'<th data-dynatable-column="del" data-dynatable-no-sort="true">'+"\n"
+    div_table += "\t"+"\t"+'<span class="glyphicon glyphicon-trash" aria-hidden="true"></span>'+"\n"
+    div_table += "\t"+"\t"+'</th>'+"\n"
     div_table += "\t"+"\t"+'</th>'+"\n"
     div_table += "\t"+'</thead>'+"\n"
     div_table += "\t"+'<tbody>'+"\n"

templates/pages/corpora/titles.html

@@ -64,13 +64,17 @@
 
                     <!-- search box with custom function in Docs_dyna_chart_and_tables.js -->
                     <div class="pull-left" style="margin-top:1.85em; font-size: 16px;">
+                        <span class="glyphicon glyphicon-search" aria-hidden="true"></span>
                         Search:
                         <input type="search" id="doubleSearch"/>
                         <span style="font-size:70%;">
+                        <span class="glyphicon glyphicon-filter" aria-hidden="true"></span>
                           <!-- Used by the #doubleSearch associated function -->
                           <input title="Search in Titles" id="searchTI" name="searchTI" type="checkbox" checked onclick="return false">TI&nbsp;
+                        <span class="glyphicon glyphicon-filter" aria-hidden="true"></span>
                           <input title="Search in Abstracts" id="searchAB" name="searchAB" type="checkbox">AB
                         </span>&nbsp;&nbsp;
+                        <span class="glyphicon glyphicon-filter" aria-hidden="true"></span>
                         <select id="dupFilter" name="dupFilter">
                             <option value="filter_all">All</option>
                             <option value="filter_dupl">Duplicates by Title</option>
@@ -83,7 +87,10 @@
                   <div class="panel-body">
                     <div id="div-table"></div>
                             <p align="right">
-                                <button id="move2trash" class="btn btn-primary btn-lg" >Trash It!</button>
+                                <button id="move2trash" class="btn btn-primary btn-lg" >
+                                <span class="glyphicon glyphicon-trash" aria-hidden="true"></span>
+                                    Trash It!
+                                </button>
                             </p>
                     </div>
                   </div>

templates/pages/main/about.html

@@ -153,7 +153,7 @@
                         <div class="row">
                             <div class="thumbnails">
                                 {% for member in team %}
-                                <div class="col-md-3 ">
+                                <div class="col-md-5 ">
                                     <div class="thumbnail">
                                         {% if member.picture %}
                                         <img src="{% static "img/credits/"%}{{ member.picture }}" style="100px; height:150px">
@@ -161,6 +161,7 @@
                                         <img src="{% static "img/logo.png" %}" style="100px; height:150px">
                                         {% endif %}
                                         <div class="caption">
+                                            <center>
                                             <h3>{{ member.first_name }} {{member.last_name }}</h3>
                                             {% if member.role %}
                                             <p class="description">{{ member.role }}</p>
@@ -171,6 +172,7 @@
                                             {% if member.website %}
                                             <a href="{{ member.website }}" class="btn btn-primary btn-xs">Website</a>
                                             {% endif %}
+                                            </center>
                                         </div>
                                     </div>
                                 </div>

templates/pages/menu.html

@@ -31,14 +31,14 @@
                         {% if project %}
                         <li><a href="/projects/{{project.id}}">
                                 <span class="glyphicon glyphicon-book" aria-hidden="true"></span>
-                                {{project.name}}
+                                {{project.name | truncatechars:15}}
                             </a>
                         </li>
                         {% endif %}
                         {% if corpus %}
                         <li><a href="/projects/{{project.id}}/corpora/{{corpus.id}}">
                                 <span class="glyphicon glyphicon-file" aria-hidden="true"></span>
-                                {{corpus.name}}
+                                {{corpus.name | truncatechars:15}}
                             </a>
                         </li>
                         {% endif %}
@@ -48,8 +48,8 @@
                         <li class="dropdown">
                             <a href="#" role="button" class="dropdown-toggle" data-toggle="dropdown" title="That is your username">
                                 <i class="icon-user"></i>
-                                <span class="glyphicon glyphicon-user" aria-hidden="true"></span>
-                                {{ user.username }}
+                                <span class="glyphicon glyphicon-user" aria-hidden="true" style="color:white"></span>
+                                {{ user.username | truncatechars:15}}
                                 <i class="caret"></i>
                             </a>
                             <ul class="dropdown-menu">

templates/pages/projects/overview.html

@@ -6,7 +6,7 @@
 <link rel="stylesheet" href="{% static "css/bootstrap.css" %}">
 <script type="text/javascript" src="{% static "js/jquery/jquery.min.js" %}"></script>
 <script type="text/javascript" src="{% static "js/gargantext/garganrest.js" %}"></script>
-<link rel="stylesheet" href="http://code.jquery.com/ui/1.11.2/themes/smoothness/jquery-ui.css">
+<link rel="stylesheet" href="{% static "js/jquery/1.11.2/jquery-ui.css" %}">
 
 <script type="text/javascript" src="{% static "js/morris.min.js" %}"></script>
 <script type="text/javascript" src="{% static "js/morris.min.js" %}"></script>
@@ -69,71 +69,77 @@
 
 <div class="container">
     <div class="row">
+        <div class="container">
+            <div class="container">
+                <div class="container">
+
+                    {% if projects %}
+                    {% for project in projects %}
+                    <!--<div class="col-md-offset-7 col-md-4 content" style="background-color:grey">!-->
+                    <div id="project_{{project.id}}" class="row">
+                        <h3>
+                            
+                            <a  
+                            href="/projects/{{ project.id }}">
+                                <span class="glyphicon glyphicon-book" aria-hidden="true"></span>
+                                {{ project.name }}
+                            </a>
+                            <a href="/projects/{{project.id}}" >
+                            <button type="button" class="btn btn-default" aria-label="Left Align">
+                                  <span class="glyphicon glyphicon-eye-open" aria-hidden="true"></span>
+                            </button>
+
+                            </a>
+
+                            <button type="button" class="btn btn-default" data-container="body" data-toggle="popover" data-placement="bottom"
+                            data-content="  <ul>
+                                            <!--
+                                            <li>Rename</li>
+                                            --!>
+                                            <li onclick=&quot;
+                                                    garganrest.nodes.delete({{project.id}}, function(){$('#project_'+{{project.id}}).remove()});
+                                                    $(this).parent().parent().remove();
+                                                &quot;><a href=&quot;#&quot;>Delete</a></li>
+                                            </ul>
+                            ">
+                            <span class="glyphicon glyphicon-trash" aria-hidden="true"></span>
+                            </button>
+                            </li>
+                            {% if common_users %}
+                            <!-- <a style="cursor:pointer;"><img class="share_button" data-id="{{ project.id }}" title="Share it!" width="20px" src="{% static "img/share.png" %}"></img></a> --!>
+                            {% endif %}
+
+                        </h3>
+
+                        <h4>{{ project.subtitle }}<h4>
+                    </div>
+                    {% endfor %}
+                    {% endif %}
+
+                    {% if common_projects %}
+                    <br><br><br><br><br><br>
+                    <h3><i> - - Shared projects - -</i></h3>
+                    {% for project in common_projects %}
+                    <!--<div class="col-md-offset-7 col-md-4 content" style="background-color:grey">!-->
+                    <div class="col-md-3 content">
+                        <h3><a href="/projects/{{ project.id }}">{{ project.name }}</a>
+                            <button type="button" class="btn btn-xs btn-default" data-container="body" data-toggle="popover" data-placement="bottom"
+                            data-content='
+                            <ul>
+                                <li> Rename </li>
+                                <li><a href="/projects/{{ project.id }}">Add new corpus</a></li>
+                                <li><a href="/delete/{{ project.id }}">Delete</a></li>
+                            </ul>
+                            '>Manage</button>
+                        </h3>
+                        <h4>{{ project.subtitle }}<h4>
+                    </div>
+                    {% endfor %}
+                    {% endif %}
 
-        {% if projects %}
-        {% for project in projects %}
-        <!--<div class="col-md-offset-7 col-md-4 content" style="background-color:grey">!-->
-        <div id="project_{{project.id}}" class="col-md-3 content">
-            <h3>
-                
-                <a  
-                href="/projects/{{ project.id }}">
-                    <span class="glyphicon glyphicon-book" aria-hidden="true"></span>
-                    {{ project.name }}
-                </a>
-                <a href="/projects/{{project.id}}" >
-                <button type="button" class="btn btn-default" aria-label="Left Align">
-                      <span class="glyphicon glyphicon-eye-open" aria-hidden="true"></span>
-                </button>
-
-                </a>
-
-                <button type="button" class="btn btn-default" data-container="body" data-toggle="popover" data-placement="bottom"
-                data-content="  <ul>
-                                <!--
-                                <li>Rename</li>
-                                --!>
-                                <li onclick=&quot;
-                                        garganrest.nodes.delete({{project.id}}, function(){$('#project_'+{{project.id}}).remove()});
-                                        $(this).parent().parent().remove();
-                                    &quot;><a href=&quot;#&quot;>Delete</a></li>
-                                </ul>
-                ">
-                <span class="glyphicon glyphicon-trash" aria-hidden="true"></span>
-                </button>
-                </li>
-                {% if common_users %}
-                <!-- <a style="cursor:pointer;"><img class="share_button" data-id="{{ project.id }}" title="Share it!" width="20px" src="{% static "img/share.png" %}"></img></a> --!>
-                {% endif %}
-
-            </h3>
-
-            <h4>{{ project.subtitle }}<h4>
-        </div>
-        {% endfor %}
-        {% endif %}
-
-        {% if common_projects %}
-        <br><br><br><br><br><br>
-        <h3><i> - - Shared projects - -</i></h3>
-        {% for project in common_projects %}
-        <!--<div class="col-md-offset-7 col-md-4 content" style="background-color:grey">!-->
-        <div class="col-md-3 content">
-            <h3><a href="/projects/{{ project.id }}">{{ project.name }}</a>
-                <button type="button" class="btn btn-xs btn-default" data-container="body" data-toggle="popover" data-placement="bottom"
-                data-content='
-                <ul>
-                    <li> Rename </li>
-                    <li><a href="/projects/{{ project.id }}">Add new corpus</a></li>
-                    <li><a href="/delete/{{ project.id }}">Delete</a></li>
-                </ul>
-                '>Manage</button>
-            </h3>
-            <h4>{{ project.subtitle }}<h4>
+                </div>
+            </div>
         </div>
-        {% endfor %}
-        {% endif %}
-
     </div>
 
 

templates/pages/projects/project.html

@@ -5,7 +5,7 @@
 <link rel="stylesheet" href="{% static "css/bootstrap.css" %}">
 <script type="text/javascript" src="{% static "js/jquery/jquery.min.js" %}"></script>
 <script type="text/javascript" src="{% static "js/gargantext/garganrest.js" %}"></script>
-<link rel="stylesheet" href="http://code.jquery.com/ui/1.11.2/themes/smoothness/jquery-ui.css">
+<link rel="stylesheet" href="{% static "js/jquery/1.11.2/jquery-ui.css" %}">
 
 <script type="text/javascript" src="{% static "js/morris.min.js" %}"></script>
 <script type="text/javascript" src="{% static "js/morris.min.js" %}"></script>
@@ -71,16 +71,13 @@
 <div class="container">
 
     {% if list_corpora  %}
-    <ul>
         {% for key, corpora in list_corpora.items %}
-        <li>
             <h2>
                 <span class="glyphicon glyphicon-cd" aria-hidden="true"></span>
                 {{ key }}
             </h2>
-            <ul>
                 {% for corpus in corpora %}
-                <li id="corpus_{{corpus.id}}">
+                <div id="corpus_{{corpus.id}}">
                     {% ifequal corpus.processing 1 %}
                     {{corpus.name}}:
                     <img width="20px" src="{% static "js/libs/img2/loading-bar.gif" %}">
@@ -165,16 +162,10 @@
                       
                     {% endfor %}
                     </div>
-
                     </p>
-
-    
-                </li>
+                </div>
                 {% endfor %}
-            </ul>
-        </li>
         {% endfor %}
-    </ul>
     {% endif %}
 
     {% if list_corporax  %}
@@ -296,7 +287,7 @@
                                 </div><!-- /.modal-content -->
                             </div><!-- /.modal-dialog -->
                         </div><!-- /.modal -->
-                        <script type="text/javascript" src="http://code.jquery.com/ui/1.11.2/jquery-ui.js"></script>
+                        <script type="text/javascript" src="{% static "js/jquery/1.11.2/jquery-ui.js" %}"></script>
                         <script type="text/javascript">
                             function getCookie(name) {
                                 var cookieValue = null;