[FIX] Docker Container reaching local host database. Need to build a container...

[FIX] Docker Container reaching local host database. Need to build a container with all in it (source code, database, notebooks).

gargantext/models/nodes.py

@@ -2,7 +2,8 @@ from gargantext.util.db import session
 from gargantext.util.files import upload
 from gargantext.constants import *
 
-from sqlalchemy_utils.types import TSVectorType
+# Uncomment to make column full text searchable
+#from sqlalchemy_utils.types import TSVectorType
 
 from datetime import datetime
 

gargantext/util/db.py

@@ -9,7 +9,10 @@ import sqlalchemy as sa
 from sqlalchemy.orm import sessionmaker, scoped_session
 from sqlalchemy.ext.declarative import declarative_base
 from sqlalchemy import delete
-from sqlalchemy_searchable import make_searchable
+
+# To make Full Text search possible, uncomment lines below
+# (and install it with pip before)
+#from sqlalchemy_searchable import make_searchable
 
 def get_engine():
     from sqlalchemy import create_engine

gargantext_notebook.py

+install/notebook/gargantext_notebook.py
\ No newline at end of file

install/gargamelle/requirements.txt

@@ -17,7 +17,7 @@ jdatetime==1.7.2
 kombu==3.0.37                  # messaging
 langdetect==1.0.6              #detectinglanguage
 nltk==3.1
-numpy==1.10.4
+numpy==1.13.1
 psycopg2==2.6.2
 pycountry==1.20
 python-dateutil==2.4.2

install/notebook.run

@@ -4,12 +4,20 @@
         #-v /srv/gargantext_lib:/srv/gargantext_lib \
 
 sudo docker rm $(sudo docker ps -a | grep notebook | grep sh | awk '{print $1}')
+
+#HOSTIP=$(ip route show 0.0.0.0/0 | awk '{print $3}')
+#--add-host=localhost:${HOSTIP} \
+
+
 sudo docker run \
         --name=garg-notebook \
-        -v /srv/gargantext:/srv/gargantext \
+        --net=host \
         -p 8899:8899 \
+        --env POSTGRES_HOST=localhost \
+        -v /srv/gargantext:/srv/gargantext \
         -it garg-notebook:latest \
-        /bin/bash -c "/bin/su notebooks -c 'source /env_3-5/bin/activate && jupyter notebook --port=8899 --ip=0.0.0.0 --no-browser --notebook-dir=/home/notebooks/'"
-        #/bin/bash -c "/bin/su gargantua -c 'source /env_3-5/bin/activate && jupyter notebook --port=8899 --ip=127.0.0.1 --no-browser'"
+        /bin/bash -c "/bin/su notebooks -c 'source /env_3-5/bin/activate && cd /srv/gargantext/ && jupyter notebook --port=8899 --ip=0.0.0.0 --no-browser'"
+#        #&& jupyter nbextension enable --py widgetsnbextension --sys-prefix 
+        #/bin/bash -c "/bin/su notebooks -c 'source /env_3-5/bin/activate && cd /srv/gargantext/ && jupyter notebook --port=8899 --ip=0.0.0.0 --no-browser --notebook-dir=/home/notebooks/'"
 
 

install/notebook/Dockerfile

@@ -16,10 +16,10 @@ RUN apt-get update &&                                     \
     apt-utils ca-certificates locales                       \
     sudo aptitude gcc g++ wget git vim                       \
     build-essential make                                      \
-    curl                                                       \
-    postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6 \
-    postgresql-server-dev-9.6 libpq-dev libxml2                  \
-    postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6
+    curl                                                       
+#    postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6 \
+#    postgresql-server-dev-9.6 libpq-dev libxml2                  \
+#    postgresql-9.6 postgresql-client-9.6 postgresql-contrib-9.6
 
 # Install Stack
 
@@ -69,7 +69,7 @@ RUN virtualenv /env_3-5
 RUN echo 'alias venv="source /env_3-5/bin/activate"' >> ~/.bashrc
 # CONFIG FILES
 ADD requirements.txt /
-ADD psql_configure.sh /
+#ADD psql_configure.sh /
 ADD django_configure.sh /
 
 RUN . /env_3-5/bin/activate && pip3 install -r requirements.txt                         && \
@@ -85,23 +85,23 @@ RUN chown notebooks:notebooks -R /env_3-5
 ### Notebook IHaskell and IPYTHON ENVIRONNEMENT
 ########################################################################
 
-RUN apt-get update && apt-get install -y    \
-        libtinfo-dev                        \
-        libzmq3-dev                         \
-        libcairo2-dev                       \
-        libpango1.0-dev                     \
-        libmagic-dev                        \
-        libblas-dev                         \
-        liblapack-dev
-RUN curl -sSL https://get.haskellstack.org/ | sh 
-RUN stack setup
-RUN git clone https://github.com/gibiansky/IHaskell
-RUN . /env_3-5/bin/activate     \
-    && cd IHaskell                    \
-    && stack install gtk2hs-buildtools \
-    && stack install --fast             \
-    && /root/.local/bin/ihaskell install --stack
-
+#RUN apt-get update && apt-get install -y    \
+#        libtinfo-dev                        \
+#        libzmq3-dev                         \
+#        libcairo2-dev                       \
+#        libpango1.0-dev                     \
+#        libmagic-dev                        \
+#        libblas-dev                         \
+#        liblapack-dev
+#RUN curl -sSL https://get.haskellstack.org/ | sh 
+#RUN stack setup
+#RUN git clone https://github.com/gibiansky/IHaskell
+#RUN . /env_3-5/bin/activate     \
+#    && cd IHaskell                    \
+#    && stack install gtk2hs-buildtools \
+#    && stack install --fast             \
+#    && /root/.local/bin/ihaskell install --stack
+#
 
 #
 ########################################################################
@@ -112,6 +112,6 @@ RUN . /env_3-5/bin/activate     \
 #RUN echo "host all  all    0.0.0.0/0  md5" >> /etc/postgresql/9.5/main/pg_hba.conf
 #RUN echo "listen_addresses='*'" >> /etc/postgresql/9.5/main/postgresql.conf
 
-EXPOSE 8899
+EXPOSE 5432 8899
 
 VOLUME ["/srv/","/home/notebooks/"]

install/notebook/gargantext_notebook.py

 """
-   Gargantext Software Copyright (c) 2016 CNRS ISC-PIF -
+   Gargantext Software Copyright (c) 2016-2017 CNRS ISC-PIF -
 http://iscpif.fr
     Licence (see :
 http://gitlab.iscpif.fr/humanities/gargantext/blob/stable/LICENSE )
@@ -47,7 +47,7 @@ def documents(corpus_id):
         )
 
 
-import seaborn as sns
+#import seaborn as sns
 import pandas as pd
 
 def chart(docs, field):

install/notebook/requirements.txt

@@ -17,7 +17,7 @@ jdatetime==1.7.2
 kombu==3.0.37                  # messaging
 langdetect==1.0.6              #detectinglanguage
 nltk==3.1
-numpy==1.10.4
+numpy==1.13.1
 psycopg2==2.6.2
 pycountry==1.20
 python-dateutil==2.4.2
@@ -40,3 +40,5 @@ jupyter-console==5.1.0
 jupyter-core==4.3.0
 ipython==5.2.0
 ipython-genutils==0.1.0
+ipywidgets
+matplotlib==2.0.2