Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
gargantext
Project
Project
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Issues
0
Issues
0
List
Board
Labels
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Wiki
Wiki
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
humanities
gargantext
Commits
f1c12e0f
Commit
f1c12e0f
authored
Oct 20, 2014
by
Administrator
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
testing file parser and error get NodeType (there is no label)
parent
bbb9c801
Changes
4
Hide whitespace changes
Inline
Side-by-side
Showing
4 changed files
with
26 additions
and
4 deletions
+26
-4
FileParser.py
parsing/FileParsers/FileParser.py
+1
-1
PubmedFileParser.py
parsing/FileParsers/PubmedFileParser.py
+1
-1
__init__.py
parsing/__init__.py
+15
-2
test_fileparser.py
test_fileparser.py
+9
-0
No files found.
parsing/FileParsers/FileParser.py
View file @
f1c12e0f
...
@@ -35,7 +35,7 @@ class FileParser:
...
@@ -35,7 +35,7 @@ class FileParser:
self
.
_ngramcaches
=
collections
.
defaultdicts
(
NgramCache
)
self
.
_ngramcaches
=
collections
.
defaultdicts
(
NgramCache
)
# extractors
# extractors
self
.
_extractors
=
dict
()
self
.
_extractors
=
dict
()
self
.
_document_nodetype
=
NodeType
.
get
(
label
=
'd
ocument'
)
self
.
_document_nodetype
=
NodeType
.
get
(
name
=
'D
ocument'
)
with
Language
.
objects
.
all
()
as
languages
:
with
Language
.
objects
.
all
()
as
languages
:
self
.
_languages_iso2
=
{
language
.
iso2
.
lower
():
language
for
language
in
Language
}
self
.
_languages_iso2
=
{
language
.
iso2
.
lower
():
language
for
language
in
Language
}
self
.
_languages_iso3
=
{
language
.
iso3
.
lower
():
language
for
language
in
Language
}
self
.
_languages_iso3
=
{
language
.
iso3
.
lower
():
language
for
language
in
Language
}
...
...
parsing/FileParsers/PubmedFileParser.py
View file @
f1c12e0f
...
@@ -6,7 +6,7 @@ class PubmedFileParser(FileParser):
...
@@ -6,7 +6,7 @@ class PubmedFileParser(FileParser):
def
parse
(
self
,
parentNode
):
def
parse
(
self
,
parentNode
):
# open the file as XML
# open the file as XML
xml_parser
=
etree
.
XMLParser
(
resolve_entities
=
False
,
recover
=
True
)
xml_parser
=
etree
.
XMLParser
(
resolve_entities
=
False
,
recover
=
True
)
xml
=
etree
.
parse
(
self
.
_file
,
parser
=
xml_parser
)
xml
=
etree
.
parse
(
self
.
_file
,
parser
=
xml_parser
)
# parse all the articles, one by one
# parse all the articles, one by one
# all database operations should be performed within one transaction
# all database operations should be performed within one transaction
...
...
parsing/__init__.py
View file @
f1c12e0f
#from .Taggers import *
#from .Taggers import *
#from .NgramsExtractors import *
#from .NgramsExtractors import *
from
.FileParsers
import
*
from
.FileParsers
import
*
from
node.models
import
Node
,
NodeType
import
zipfile
import
zipfile
import
collections
import
collections
...
@@ -18,13 +18,26 @@ class Parser:
...
@@ -18,13 +18,26 @@ class Parser:
# CHECKER GUID!!!!!!!!!!!!!!!!!!!!!!!!!!!!
# CHECKER GUID!!!!!!!!!!!!!!!!!!!!!!!!!!!!
pass
pass
def
parse_node_fichier
(
self
,
node
):
if
node
.
fichier
and
zipfile
.
is_zipfile
(
node
.
fichier
):
with
zipfile
.
ZipFile
(
node
.
fichier
,
"r"
)
as
zipFile
:
node_type
=
NodeType
.
objects
.
get
(
name
=
"Document"
)
for
filename
in
zipFile
.
namelist
():
file
=
zipFile
.
open
(
filename
,
"r"
)
node
.
objects
.
create
(
parent
=
node
,
type
=
node_type
,
user
=
node
.
user
,
)
def
parse_node
(
self
,
node
):
def
parse_node
(
self
,
node
):
for
resource
in
node
.
resources
:
for
resource
in
node
.
resources
:
if
node
.
resources
.
file
and
zipfile
.
is_zipfile
(
node
.
resources
.
file
):
if
node
.
resources
.
file
and
zipfile
.
is_zipfile
(
node
.
resources
.
file
):
with
zipfile
.
ZipFile
(
node
.
resources
.
file
,
"r"
)
as
zipFile
:
with
zipfile
.
ZipFile
(
node
.
resources
.
file
,
"r"
)
as
zipFile
:
for
filename
in
zipFile
.
namelist
():
for
filename
in
zipFile
.
namelist
():
file
=
zipFile
.
open
(
filename
,
"r"
)
file
=
zipFile
.
open
(
filename
,
"r"
)
node
.
add_child
(
Node
.
objects
.
create
(
parent
=
node
,
type
=
NodeType
.
get
(
name
=
"Document"
),
type
=
NodeType
.
get
(
name
=
"Document"
),
user
=
node
.
user
,
user
=
node
.
user
,
...
...
test_fileparser.py
0 → 100644
View file @
f1c12e0f
import
parsing
from
node.models
import
Node
node
=
Node
.
objects
.
get
(
name
=
"PubMed corpus"
)
parser
=
parsing
.
Parser
()
parser
.
parse_node_fichier
(
node
)
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment