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clinicaltrials
Commit 8a351ffa authored by PkSM3's avatar PkSM3
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global variables changed

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Showing with 451 additions and 477 deletions
LOCALDB/parameters_details.php
View file @ 8a351ffa
......@@ -8,6 +8,8 @@ $gexf_db = array();
# $gexf_db["data/ClimateChange/ClimateChangeV1.gexf"] = "data/ClimateChange/wosclimatechange-61715-1-wosclimatechange-db(2).db";
$gexf_db["data/ClimateChange/Maps_S_800.gexf"] = "data/ClimateChange/wos_climate-change_title_2014-2015.db";
$gexf_db["data/AXA/EditedJan20151980 nodes V2 PageRank.gexf"] = "data/AXA/data.db";
$gexf= str_replace('"','',$_GET["gexf"]);
$mainpath=dirname(getcwd())."/";
......
db.json
View file @ 8a351ffa
{
"data/AXA": {
"dbname":"data.db",
"title":"ISITITLE",
"date":"ISIpubdate",
"abstract":"ISIABSTRACT",
"gexfs": {
"EditedJan20151980 nodes V2 PageRank.gexf": {
"social": { "table":"ISIAUTHOR" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsAsbestos" , "textCol":"data","forkeyCol":"id"}
},
"asbestos.gexf": {
"social": { "table":"ISIAUTHOR" , "textCol":"data","forkeyCol":"id"},
"semantic": { "table":"ISItermsAsbestos" , "textCol":"data","forkeyCol":"id"}
}
}
},
"data/ClimateChange": {
"dbname":"wos_climate-change_title_2014-2015.db",
"title":"ISITITLE",
......
extras_explorerjs.js
View file @ 8a351ffa
This diff is collapsed.
settings_explorerjs.js
View file @ 8a351ffa
/*
* Customize as you want ;)
*/
// ============ < DEVELOPER OPTIONS > ============
var geomap=false;
var colorByAtt = false;
var twittertimeline = false;
var minimap=false;
var getAdditionalInfo=false;//for topPapers div
var mainfile = ["db.json"];
// // var mainfile = "api.json";
// var mainfile = [
// "data/2-Terms-Authors-300nodes.gexf",
// "data/0-terms-terms-MainNodes.gexf",
// "data/maziyar2.json",
// "data/3-Terms-Countries-300nodes.gexf",
// // "data/noclimatechange_mnodes.gexf",
// "data/20150518t1052_phylograph.json",
// // "data/phylograph_6.json",
// // "data/maziyar.json",
// // "data/20141128_GPs_03_bi.gexf",
// // "data/example.json",
// // "data/Elisa__Omodei.gexf",
// ];
var APINAME = "LOCALDB/"
// getUrlParam.file = "data/testgraph.json";
var dataFolderTree = {};
var egonode = {}
var iwantograph = "";
var bridge={};
external="";
//external="http://tina.iscpif.fr/explorerjs/";//Just if you want to use the server-apps from tina.server
bridge["forFilteredQuery"] = external+"php/bridgeClientServer_filter.php";
bridge["forNormalQuery"] = external+"php/bridgeClientServer.php";
var gexfDict={};
// gexfDict["data/terrorism/terrorism_mono.gexf"] = "[2001-2014] TERRORISM (1-partite graph)";
// gexfDict["data/terrorism/terrorism_bi.gexf"] = "[2001-2014] TERRORISM (2-partite graph)";
var field = {}
// field["data/20141128_GPs_03_bi.gexf"] = "ISItermsfirstindexing";
// field["data/20141215_GPs_04.gexf"] = "ISItermsfirstindexing";
// field["data/medq2/20141128_MED_02_bi.gexf"] = "ISItermsBigWL";
// field["data/medq2/20141128_MED_03_bi.gexf"] = "ISItermsBigWL";
// field["data/medq2/20141208_MED_Author_name-ISItermsjulien_index.gexf"] = "ISItermsjulien_index";
// field["data/medq1/20141208_MED_01_bi.gexf"] = "ISItermsfirstindex";
// field["data/terrorism/terrorism_mono.gexf"] = "ISItermsListV1";
// field["data/terrorism/terrorism_bi.gexf"] = "ISItermsListV1";
var TW = {}
TW.geomap = false;
TW.colorByAtt = false;
TW.twittertimeline = false;
TW.minimap=false;
TW.getAdditionalInfo=false;// True: Activate TopPapers feature.
TW.mainfile = ["db.json"];
// // TW.mainfile = "api.json";
// TW.mainfile = [
// "data/2-Terms-Authors-300nodes.gexf",
// "data/0-terms-terms-MainNodes.gexf",
// "data/maziyar2.json",
// "data/3-Terms-Countries-300nodes.gexf",
// // "data/noclimatechange_mnodes.gexf",
// "data/20150518t1052_phylograph.json",
// // "data/phylograph_6.json",
// // "data/maziyar.json",
// // "data/20141128_GPs_03_bi.gexf",
// // "data/example.json",
// // "data/Elisa__Omodei.gexf",
// ];
TW.APINAME = "LOCALDB/";
TW.bridge={};
TW.bridge["forFilteredQuery"] = "php/bridgeClientServer_filter.php";
TW.bridge["forNormalQuery"] = "php/bridgeClientServer.php";
TW.gexfDict={};
TW.gexfDictReverse={}
for (var i in TW.gexfDict){
TW.gexfDictReverse[TW.gexfDict[i]]=i;
}
TW.field = {}
// field["data/20141128_GPs_03_bi.gexf"] = "ISItermsfirstindexing";
// field["data/20141215_GPs_04.gexf"] = "ISItermsfirstindexing";
TW.Relations = {}
TW.SystemStates = {}
TW.SystemStates.level = true;
TW.SystemStates.type = [ true ] //[ true , false ]; //social activated!
TW.SystemStates.selections = [];
TW.SystemStates.opposites = [];
TW.catSoc = "Document";
TW.catSem = "NGram";
var ParseCustom = function () {};
var SigmaUtils = function () {};
var TinaWebJS = function () {};
var Relations = {}
var SystemStates = {}
SystemStates.level = true;
SystemStates.type = [ true ] //[ true , false ]; //social activated!
SystemStates.selections = [];
SystemStates.opposites = [];
ircNick="";
ircCHN="";
var catSoc = "Document";
var catSem = "NGram";
var sizeMult = [];
sizeMult[catSoc] = 0.0;
sizeMult[catSem] = 0.0;
sizeMult[TW.catSoc] = 0.0;
sizeMult[TW.catSem] = 0.0;
var inactiveColor = '#666';
var startingNodeId = "1";
......@@ -155,10 +118,9 @@ var sigmaJsMouseProperties = {
// ============ < VARIABLES.JS > ============
//"http://webchat.freenode.net/?nick=Ademe&channels=#anoe"
var ircUrl="http://webchat.freenode.net/?nick="+ircNick+"&channels="+ircCHN;
var twjs="tinawebJS/";
var categories = {};
var categoriesIndex = [];
TW.categories = {};
TW.categoriesIndex = [];
var gexf;
//var zoom=0;
......@@ -183,7 +145,7 @@ var lastFilter = []
lastFilter["#slidercat0edgesweight"] = {"orig":"-" , "last":"-"}
lastFilter["#slidercat1edgesweight"] = {"orig":"-" , "last":"-"}
var Filters = {}
TW.Filters = {}
......@@ -193,11 +155,11 @@ var overviewScale = 0.25;
var overviewHover=false;
var moveDelay = 80, zoomDelay = 2;
//var Vecindad;
var partialGraph;
TW.partialGraph;
var otherGraph;
var Nodes = [];
var Edges = [];
var Clusters = [];
TW.Nodes = [];
TW.Edges = [];
TW.Clusters = [];
var nodeslength=0;
......@@ -232,10 +194,6 @@ var maxEdgeWeight=0.0;
//---------------------------------------------------
var bipartite=false;
var gexfDictReverse={}
for (var i in gexfDict){
gexfDictReverse[gexfDict[i]]=i;
}
var colorList = ["#000000", "#FFFF00", "#1CE6FF", "#FF34FF", "#FF4A46", "#008941", "#006FA6", "#A30059", "#FFDBE5", "#7A4900", "#0000A6", "#63FFAC", "#B79762", "#004D43", "#8FB0FF", "#997D87", "#5A0007", "#809693", "#FEFFE6", "#1B4400", "#4FC601", "#3B5DFF", "#4A3B53", "#FF2F80", "#61615A", "#BA0900", "#6B7900", "#00C2A0", "#FFAA92", "#FF90C9", "#B903AA", "#D16100", "#DDEFFF", "#000035", "#7B4F4B", "#A1C299", "#300018", "#0AA6D8", "#013349", "#00846F", "#372101", "#FFB500", "#C2FFED", "#A079BF", "#CC0744", "#C0B9B2", "#C2FF99", "#001E09", "#00489C", "#6F0062", "#0CBD66", "#EEC3FF", "#456D75", "#B77B68", "#7A87A1", "#788D66", "#885578", "#FAD09F", "#FF8A9A", "#D157A0", "#BEC459", "#456648", "#0086ED", "#886F4C","#34362D", "#B4A8BD", "#00A6AA", "#452C2C", "#636375", "#A3C8C9", "#FF913F", "#938A81", "#575329", "#00FECF", "#B05B6F", "#8CD0FF", "#3B9700", "#04F757", "#C8A1A1", "#1E6E00", "#7900D7", "#A77500", "#6367A9", "#A05837", "#6B002C", "#772600", "#D790FF", "#9B9700", "#549E79", "#FFF69F", "#201625", "#72418F", "#BC23FF", "#99ADC0", "#3A2465", "#922329", "#5B4534", "#FDE8DC", "#404E55", "#0089A3", "#CB7E98", "#A4E804", "#324E72", "#6A3A4C", "#83AB58", "#001C1E", "#D1F7CE", "#004B28", "#C8D0F6", "#A3A489", "#806C66", "#222800", "#BF5650", "#E83000", "#66796D", "#DA007C", "#FF1A59", "#8ADBB4", "#1E0200", "#5B4E51", "#C895C5", "#320033", "#FF6832", "#66E1D3", "#CFCDAC", "#D0AC94", "#7ED379", "#012C58"];
......
tinawebJS/Tinaweb.js
View file @ 8a351ffa
......@@ -48,7 +48,7 @@ SelectionEngine = function() {
if(cursorsize>0) {
clickedNodes = this.SelectThis2( area )
} else {
clickedNodes = partialGraph._core.graph.nodes.filter(function(n) {
clickedNodes = TW.partialGraph._core.graph.nodes.filter(function(n) {
return !!n['hover'];
}).map(function(n) {
return n.id;
......@@ -122,7 +122,7 @@ SelectionEngine = function() {
if(cursorsize>0) {
targeted = this.SelectThis2( area )
} else {
targeted = partialGraph._core.graph.nodes.filter(function(n) {
targeted = TW.partialGraph._core.graph.nodes.filter(function(n) {
return !!n['hover'];
}).map(function(n) {
return n.id;
......@@ -203,7 +203,7 @@ SelectionEngine = function() {
cancelSelection(false);
MultipleSelection2(targeted);
}
partialGraph.draw();
TW.partialGraph.draw();
$("input#searchinput").val("");
$("input#searchinput").autocomplete( "close" );
......@@ -240,7 +240,7 @@ SelectionEngine = function() {
//Multiple selection
var counter=0;
var actualSel=[];
partialGraph.iterNodes(function(n){
TW.partialGraph.iterNodes(function(n){
if(!n.hidden){
distance = Math.sqrt(
Math.pow((x1-parseInt(n.displayX)),2) +
......@@ -263,7 +263,7 @@ SelectionEngine = function() {
greyEverything();
var typeNow = partialGraph.states.slice(-1)[0].type.map(Number).join("|")
var typeNow = TW.partialGraph.states.slice(-1)[0].type.map(Number).join("|")
console.log ("console.loging the Type:")
console.log (typeNow)
console.log (" - - - - - - ")
......@@ -280,8 +280,8 @@ SelectionEngine = function() {
else ndsids=nodes;
for(var i in ndsids) {
s = ndsids[i];
if(Relations[typeNow] && Relations[typeNow][s] ) {
neigh = Relations[typeNow][s]
if(TW.Relations[typeNow] && TW.Relations[typeNow][s] ) {
neigh = TW.Relations[typeNow][s]
if(neigh) {
for(var j in neigh) {
t = neigh[j]
......@@ -300,7 +300,7 @@ SelectionEngine = function() {
for(var i in nodes_2_colour) {
if(i) {
n = partialGraph._core.graph.nodesIndex[i]
n = TW.partialGraph._core.graph.nodesIndex[i]
if(n) {
n.color = n.attr['true_color'];
n.attr['grey'] = 0;
......@@ -312,7 +312,7 @@ SelectionEngine = function() {
}
}
for(var i in edges_2_colour) {
an_edge = partialGraph._core.graph.edgesIndex[i]
an_edge = TW.partialGraph._core.graph.edgesIndex[i]
if(!isUndef(an_edge) && !an_edge.hidden){
an_edge.color = an_edge.attr['true_color'];
an_edge.attr['grey'] = 0;
......@@ -321,13 +321,13 @@ SelectionEngine = function() {
var the_new_sels = Object.keys(selections).map(Number)
partialGraph.states.slice(-1)[0].selections = the_new_sels;
partialGraph.states.slice(-1)[0].setState( { sels: the_new_sels} )
TW.partialGraph.states.slice(-1)[0].selections = the_new_sels;
TW.partialGraph.states.slice(-1)[0].setState( { sels: the_new_sels} )
var neighsDict = {}
if(Relations["1|1"]) {
if(TW.Relations["1|1"]) {
for(var s in the_new_sels) {
var neighs = Relations["1|1"][the_new_sels[s]];
var neighs = TW.Relations["1|1"][the_new_sels[s]];
for(var n in neighs) {
if (!neighsDict[neighs[n]])
neighsDict[neighs[n]] = 0;
......@@ -343,7 +343,7 @@ SelectionEngine = function() {
overNodes=true;
partialGraph.draw();
TW.partialGraph.draw();
updateLeftPanel_fix( selections , oppos );
......@@ -452,7 +452,7 @@ TinaWebJS = function ( sigmacanvas ) {
SelInst.MultipleSelection2({nodes:targeted});
cursor_size = prev_cursor_size;
}
partialGraph.draw();
TW.partialGraph.draw();
$("input#searchinput").val("");
$("input#searchinput").autocomplete( "close" );
......@@ -481,7 +481,7 @@ TinaWebJS = function ( sigmacanvas ) {
cancelSelection(false);
SelInst.MultipleSelection2({nodes:targeted});
}
partialGraph.draw();
TW.partialGraph.draw();
$("input#searchinput").val("");
$("input#searchinput").autocomplete( "close" );
......@@ -743,10 +743,10 @@ TinaWebJS = function ( sigmacanvas ) {
onchange:function(value){
$.doTimeout(100,function (){
partialGraph.iterNodes(function (n) {
if(Nodes[n.id].type==catSoc) {
var newval = parseFloat(Nodes[n.id].size) + parseFloat((value-1))*0.3
if(TW.Nodes[n.id].type==TW.catSoc) {
var newval = parseFloat(TW.Nodes[n.id].size) + parseFloat((value-1))*0.3
n.size = (newval<1.0)?1:newval;
sizeMult[catSoc] = parseFloat(value-1)*0.3;
sizeMult[TW.catSoc] = parseFloat(value-1)*0.3;
}
});
partialGraph.draw();
......@@ -764,10 +764,10 @@ TinaWebJS = function ( sigmacanvas ) {
onchange:function(value){
$.doTimeout(100,function (){
partialGraph.iterNodes(function (n) {
if(Nodes[n.id].type==catSem) {
var newval = parseFloat(Nodes[n.id].size) + parseFloat((value-1))*0.3
if(TW.Nodes[n.id].type==TW.catSem) {
var newval = parseFloat(TW.Nodes[n.id].size) + parseFloat((value-1))*0.3
n.size = (newval<1.0)?1:newval;
sizeMult[catSem] = parseFloat(value-1)*0.3;
sizeMult[TW.catSem] = parseFloat(value-1)*0.3;
}
});
partialGraph.draw();
......
tinawebJS/enviroment.js
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tinawebJS/main.js
View file @ 8a351ffa
......@@ -21,6 +21,7 @@
/\(([\s\S]*?)\)/,
/[$\w]+/g
);
var AjaxSync = (function(TYPE, URL, DATA, CT , DT) {
var Result = []
TYPE = (!TYPE)?"GET":"POST"
......@@ -46,7 +47,7 @@ var AjaxSync = (function(TYPE, URL, DATA, CT , DT) {
}).index();
function getGexfPath(v){
gexfpath=(gexfDictReverse[v])?gexfDictReverse[v]:v;
var gexfpath=(TW.gexfDictReverse[v])?TW.gexfDictReverse[v]:v;
return gexfpath;
}
......@@ -57,30 +58,27 @@ function jsActionOnGexfSelector(gexfLegend){
window.location=window.location.origin+window.location.pathname+"?file="+encodeURIComponent( gexfLegend );
}
var urlfile_override = (isUndef(getUrlParam.file))?false:true;
var files_selector = ""
if(urlfile_override)
mainfile.unshift( getUrlParam.file );
if( !isUndef(getUrlParam.file) )
TW.mainfile.unshift( getUrlParam.file );
unique_mainfile = mainfile.filter(function(item, pos) {
return mainfile.indexOf(item) == pos;
var unique_mainfile = TW.mainfile.filter(function(item, pos) {
return TW.mainfile.indexOf(item) == pos;
});
mainfile = unique_mainfile;
TW.mainfile = unique_mainfile;
console.log("THE URL.FILE PARAM:")
console.log(mainfile)
console.log(TW.mainfile)
files_selector += '<select onchange="jsActionOnGexfSelector(this.value);">'
for(var i in mainfile) {
var gotoURL = window.location.origin+window.location.pathname+"?file="+mainfile[i];
files_selector += '<option>'+mainfile[i]+'</option>'
for(var i in TW.mainfile) {
var gotoURL = window.location.origin+window.location.pathname+"?file="+TW.mainfile[i];
files_selector += '<option>'+TW.mainfile[i]+'</option>'
}
files_selector += "</select>"
$("#network").html(files_selector)
var file = (Array.isArray(mainfile))?mainfile[0]:mainfile;
var file = (Array.isArray(TW.mainfile))?TW.mainfile[0]:TW.mainfile;
var RES = AjaxSync({ URL: file });
......@@ -91,7 +89,7 @@ if(RES["OK"]) {
if(file=="db.json") {
getAdditionalInfo = true;
TW.getAdditionalInfo = true;
fileparam = file;
......@@ -103,8 +101,8 @@ if(RES["OK"]) {
for(var gexf in the_gexfs) {
pr("\t\t\t"+gexf)
pr("\t\t\t\t"+ the_gexfs[gexf]["semantic"]["table"] )
field[path+"/"+gexf] = the_gexfs[gexf]["semantic"]["table"]
gexfDict[path+"/"+gexf] = "A "+gexf
TW.field[path+"/"+gexf] = the_gexfs[gexf]["semantic"]["table"]
TW.gexfDict[path+"/"+gexf] = "A "+gexf
getUrlParam.file = path+"/"+gexf
break
}
......@@ -112,8 +110,8 @@ if(RES["OK"]) {
}
pr("\n============================\n")
pr(field)
pr(gexfDict)
pr(TW.field)
pr(TW.gexfDict)
var sub_RES = AjaxSync({ URL: getUrlParam.file });
the_data = sub_RES["data"]
fileparam = sub_RES["format"]
......@@ -139,23 +137,23 @@ if(RES["OK"]) {
var possibleStates = makeSystemStates( categories )
var initialState = buildInitialState( categories ) //[true,false]//
dicts = start.makeDicts(categories);
Nodes = dicts.nodes;
Edges = dicts.edges;
if (the_data.clusters) Clusters = the_data.clusters
var dicts = start.makeDicts(categories);
TW.Nodes = dicts.nodes;
TW.Edges = dicts.edges;
if (the_data.clusters) TW.Clusters = the_data.clusters
nodes1 = dicts.n1;//not used
TW.nodes1 = dicts.n1;//not used
var catDict = dicts.catDict
pr("CategoriesDict: ")
pr(catDict)
categoriesIndex = categories;//to_remove
catSoc = categories[0];//to_remove
catSem = (categories[1])?categories[1]:false;//to_remove
TW.categoriesIndex = categories;//to_remove
TW.catSoc = categories[0];//to_remove
TW.catSem = (categories[1])?categories[1]:false;//to_remove
for(var i in categories) {
Filters[i] = {}
Filters[i]["#slidercat"+i+"edgesweight"] = true;
TW.Filters[i] = {}
TW.Filters[i]["#slidercat"+i+"edgesweight"] = true;
}
// [ Initiating Sigma-Canvas ]
......@@ -169,21 +167,21 @@ if(RES["OK"]) {
// [ Poblating the Sigma-Graph ]
var sigma_utils = new SigmaUtils();
partialGraph = sigma.init(document.getElementById('sigma-example'))
TW.partialGraph = sigma.init(document.getElementById('sigma-example'))
.drawingProperties(sigmaJsDrawingProperties)
.graphProperties(sigmaJsGraphProperties)
.mouseProperties(sigmaJsMouseProperties);
partialGraph = sigma_utils.FillGraph( initialState , catDict , dicts.nodes , dicts.edges , partialGraph );
partialGraph.states = []
partialGraph.states[0] = false;
partialGraph.states[1] = SystemStates;
partialGraph.states[1].categories = categories
partialGraph.states[1].categoriesDict = catDict;
partialGraph.states[1].type = initialState;
partialGraph.states[1].LouvainFait = false;
TW.partialGraph = sigma_utils.FillGraph( initialState , catDict , dicts.nodes , dicts.edges , TW.partialGraph );
TW.partialGraph.states = []
TW.partialGraph.states[0] = false;
TW.partialGraph.states[1] = TW.SystemStates;
TW.partialGraph.states[1].categories = categories
TW.partialGraph.states[1].categoriesDict = catDict;
TW.partialGraph.states[1].type = initialState;
TW.partialGraph.states[1].LouvainFait = false;
// [ / Poblating the Sigma-Graph ]
partialGraph.states[1].setState = (function( type , level , sels , oppos ) {
TW.partialGraph.states[1].setState = (function( type , level , sels , oppos ) {
var bistate=false, typestring=false;
console.log("IN THE SET STATE METHOD:")
if(!isUndef(type)) {
......@@ -207,8 +205,8 @@ if(RES["OK"]) {
console.log("opposites: ");
console.log(oppos)
var present = partialGraph.states.slice(-1)[0]; // Last
var past = partialGraph.states.slice(-2)[0] // avant Last
var present = TW.partialGraph.states.slice(-1)[0]; // Last
var past = TW.partialGraph.states.slice(-2)[0] // avant Last
console.log("previous level: "+past.level)
console.log("new level: "+present.level)
......@@ -224,7 +222,7 @@ if(RES["OK"]) {
LevelButtonDisable(true)
// console.log("printing the first state:")
// first_state = partialGraph.states.slice(-1)[0].type;
// first_state = TW.partialGraph.states.slice(-1)[0].type;
// for(var i in first_state) {
// if(first_state[i]) {
// for(var j in Filters[i])
......@@ -279,14 +277,14 @@ if(RES["OK"]) {
bgcolor:"#FFA500",
onchange:function(value){
$.doTimeout(100,function (){
partialGraph.iterNodes(function (n) {
if(Nodes[n.id].type==catSem) {
var newval = parseFloat(Nodes[n.id].size) + parseFloat((value-1))*0.3
TW.partialGraph.iterNodes(function (n) {
if(TW.Nodes[n.id].type==TW.catSem) {
var newval = parseFloat(TW.Nodes[n.id].size) + parseFloat((value-1))*0.3
n.size = (newval<1.0)?1:newval;
sizeMult[catSem] = parseFloat(value-1)*0.3;
sizeMult[TW.catSem] = parseFloat(value-1)*0.3;
}
});
partialGraph.draw();
TW.partialGraph.draw();
});
}
});
......@@ -305,17 +303,17 @@ if(RES["OK"]) {
}
}).index();
partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8).draw();
TW.partialGraph.zoomTo(TW.partialGraph._core.width / 2, TW.partialGraph._core.height / 2, 0.8).draw();
// fa2enabled=true; partialGraph.zoomTo(partialGraph._core.width / 2, partialGraph._core.height / 2, 0.8).draw();
// fa2enabled=true; TW.partialGraph.zoomTo(TW.partialGraph._core.width / 2, TW.partialGraph._core.height / 2, 0.8).draw();
// $.doTimeout(1,function(){
// fa2enabled=true; partialGraph.startForceAtlas2();
// fa2enabled=true; TW.partialGraph.startForceAtlas2();
// $.doTimeout(10,function(){
// partialGraph.stopForceAtlas2();
// TW.partialGraph.stopForceAtlas2();
// });
// });
twjs_.initListeners( categories , partialGraph);
twjs_.initListeners( categories , TW.partialGraph);
if( categories.length==1 ) {
$("#changetype").hide();
......
tinawebJS/methods.js
View file @ 8a351ffa
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tinawebJS/sigma.forceatlas2.js
View file @ 8a351ffa
......@@ -341,7 +341,7 @@ sigma.forceatlas2.ForceAtlas2 = function(graph , V , E) {
var swingingVSnodes_length = swingingSum/nodes.length; /**/
if(stopcriteria && (convg > swingingVSnodes_length)){
pr("i've applied the stopcriteria: "+self.count)
partialGraph.stopForceAtlas2();
TW.partialGraph.stopForceAtlas2();
}
self.p.totalEffectiveTraction = totalEffectiveTraction;
......@@ -1128,7 +1128,7 @@ sigma.publicPrototype.startForceAtlas2 = function() {
}
if(isolatedBCauseFilter==ene) {
partialGraph.stopForceAtlas2();
TW.partialGraph.stopForceAtlas2();
return;
}
......@@ -1139,12 +1139,12 @@ sigma.publicPrototype.startForceAtlas2 = function() {
return true;
});
var present = partialGraph.states.slice(-1)[0]
var present = TW.partialGraph.states.slice(-1)[0]
// fixing anomaly in forceatlas2
$.doTimeout(250,function (){
if( !present.level && partialGraph.forceatlas2.active && partialGraph.forceatlas2.count==0) {
if( !present.level && TW.partialGraph.forceatlas2.active && TW.partialGraph.forceatlas2.count==0) {
pr("SUPER JUTSU!!")
partialGraph.startForceAtlas2();
TW.partialGraph.startForceAtlas2();
return;
}
});
......@@ -1153,7 +1153,7 @@ sigma.publicPrototype.startForceAtlas2 = function() {
};
sigma.publicPrototype.stopForceAtlas2 = function() {
var present = partialGraph.states.slice(-1)[0]
var present = TW.partialGraph.states.slice(-1)[0]
if(this.forceatlas2) {
if(this.forceatlas2.count) {
pr("\t\t\t\t\tFA2 Stopped: "+this.forceatlas2.count)
......@@ -1162,14 +1162,14 @@ sigma.publicPrototype.stopForceAtlas2 = function() {
first_state = present.type;
for(var i in first_state) {
if(first_state[i]) {
for(var j in Filters[i]) {
for(var j in TW.Filters[i]) {
original = lastFilter[j]["orig"]
thelast = lastFilter[j]["last"]
if(thelast!="-") {
if(original==thelast) {
for(var i in partialGraph._core.graph.nodesIndex){
Nodes[i].x = partialGraph._core.graph.nodesIndex[i].x;
Nodes[i].y = partialGraph._core.graph.nodesIndex[i].y;
for(var i in TW.partialGraph._core.graph.nodesIndex){
TW.Nodes[i].x = TW.partialGraph._core.graph.nodesIndex[i].x;
TW.Nodes[i].y = TW.partialGraph._core.graph.nodesIndex[i].y;
}
}
}
......@@ -1182,15 +1182,14 @@ sigma.publicPrototype.stopForceAtlas2 = function() {
this.forceatlas2.count=0;
}
this.removeGenerator('forceatlas2');
partialGraph.refresh();
if(minimap) $("#overviewzone").show();
TW.partialGraph.refresh();
if(first_time) {
$.doTimeout(100,function (){
pr("\t\t\t\t\tFirst time FA2 Stopped")
for(var i in partialGraph._core.graph.nodesIndex){
Nodes[i].x = partialGraph._core.graph.nodesIndex[i].x;
Nodes[i].y = partialGraph._core.graph.nodesIndex[i].y;
for(var i in TW.partialGraph._core.graph.nodesIndex){
TW.Nodes[i].x = TW.partialGraph._core.graph.nodesIndex[i].x;
TW.Nodes[i].y = TW.partialGraph._core.graph.nodesIndex[i].y;
}
});
first_time=false;
......
tinawebJS/sigma.min.js
View file @ 8a351ffa
......@@ -1273,9 +1273,9 @@ sigma.classes.Cascade = function() {
*/
function empty() {
if(partialGraph) {
if(partialGraph.forceatlas2) {
partialGraph.stopForceAtlas2();
if(TW.partialGraph) {
if(TW.partialGraph.forceatlas2) {
TW.partialGraph.stopForceAtlas2();
}
}
......@@ -2910,8 +2910,8 @@ sigma.classes.Cascade = function() {
self.p.zoomMultiply :
1 / self.p.zoomMultiply)
);
partialGraph.centreX = (self.mouseX*(overviewWidth/(partialGraph._core.width-1)));
partialGraph.centreY = (self.mouseY*(overviewHeight/(partialGraph._core.height-1)));
TW.partialGraph.centreX = (self.mouseX*(overviewWidth/(TW.partialGraph._core.width-1)));
TW.partialGraph.centreY = (self.mouseY*(overviewHeight/(TW.partialGraph._core.height-1)));
if (self.p['blockScroll']) {
if (event.preventDefault) {
......
tinawebJS/sigma.parseCustom.js
View file @ 8a351ffa
......@@ -292,13 +292,13 @@ function dictfyGexf( gexf , categories ){
}
var attention = false
if( Clusters.length == 0 ) {
if( TW.Clusters.length == 0 ) {
if( nodes[1].attributes["cluster_index"] ) {
attention = true;
}
}
Clusters = {}
TW.Clusters = {}
//New scale for node size: now, between 2 and 5 instead [1,70]
for(var it in nodes){
nodes[it].size = desirableNodeSizeMIN+ (parseInt(nodes[it].size)-1)*((desirableNodeSizeMAX-desirableNodeSizeMIN) / (maxNodeSize-minNodeSize));
......@@ -307,13 +307,13 @@ function dictfyGexf( gexf , categories ){
var t_cnumber = nodes[it].attributes["cluster_index"]
nodes[it].attributes["clust_default"] = t_cnumber;
var t_label = (nodes[it].attributes["cluster_label"])?nodes[it].attributes["cluster_label"]:"cluster_"+nodes[it].attributes["cluster_index"]
if(!Clusters[t_type]) {
Clusters[t_type] = {}
Clusters[t_type]["clust_default"] = {}
if(!TW.Clusters[t_type]) {
TW.Clusters[t_type] = {}
TW.Clusters[t_type]["clust_default"] = {}
}
Clusters[t_type]["clust_default"][t_cnumber] = t_label
TW.Clusters[t_type]["clust_default"][t_cnumber] = t_label
}
// partialGraph._core.graph.nodesIndex[it].size=Nodes[it].size;
// TW.partialGraph._core.graph.nodesIndex[it].size=Nodes[it].size;
}
......@@ -373,12 +373,12 @@ function dictfyGexf( gexf , categories ){
}
idArray = idInRelations.map(Number).join("|")
edge.categ = idArray;
if(!Relations[idArray]) Relations[idArray] = {}
if(!TW.Relations[idArray]) TW.Relations[idArray] = {}
if(isUndef(Relations[idArray][source])) Relations[idArray][source] = {};
if(isUndef(Relations[idArray][target])) Relations[idArray][target] = {};
Relations[idArray][source][target]=true;
Relations[idArray][target][source]=true;
if(isUndef(TW.Relations[idArray][source])) TW.Relations[idArray][source] = {};
if(isUndef(TW.Relations[idArray][target])) TW.Relations[idArray][target] = {};
TW.Relations[idArray][source][target]=true;
TW.Relations[idArray][target][source]=true;
// [ / New Code! ]
......@@ -400,7 +400,7 @@ function dictfyGexf( gexf , categories ){
}
nodes1[source].neighbours.push(target);
nodes1[target].neighbours.push(source);
// partialGraph.addEdge(indice,source,target,edge);
// TW.partialGraph.addEdge(indice,source,target,edge);
}
if(categories.length>1) {
......@@ -482,9 +482,9 @@ function dictfyGexf( gexf , categories ){
}
}
for(var i in Relations) {
for(var j in Relations[i]) {
Relations[i][j] = Object.keys(Relations[i][j]).map(Number)
for(var i in TW.Relations) {
for(var j in TW.Relations[i]) {
TW.Relations[i][j] = Object.keys(TW.Relations[i][j]).map(Number)
}
}
......@@ -617,12 +617,12 @@ function dictfyJSON( data , categories ) {
}
idArray = idInRelations.map(Number).join("|")
edge.categ = idArray;
if(!Relations[idArray]) Relations[idArray] = {}
if(!TW.Relations[idArray]) TW.Relations[idArray] = {}
if(isUndef(Relations[idArray][source])) Relations[idArray][source] = {};
if(isUndef(Relations[idArray][target])) Relations[idArray][target] = {};
Relations[idArray][source][target]=true;
Relations[idArray][target][source]=true;
if(isUndef(TW.Relations[idArray][source])) TW.Relations[idArray][source] = {};
if(isUndef(TW.Relations[idArray][target])) TW.Relations[idArray][target] = {};
TW.Relations[idArray][source][target]=true;
TW.Relations[idArray][target][source]=true;
// [ / New Code! ]
......@@ -720,9 +720,9 @@ function dictfyJSON( data , categories ) {
}
}
for(var i in Relations) {
for(var j in Relations[i]) {
Relations[i][j] = Object.keys(Relations[i][j]).map(Number)
for(var i in TW.Relations) {
for(var j in TW.Relations[i]) {
TW.Relations[i][j] = Object.keys(TW.Relations[i][j]).map(Number)
}
}
......
tinawebJS/sigmaUtils.js
View file @ 8a351ffa
......@@ -33,11 +33,11 @@ SigmaUtils = function () {
var typeNow = initialState.map(Number).join("|")
for(var i in Relations[typeNow]) {
for(var i in TW.Relations[typeNow]) {
s = i;
for(var j in Relations[typeNow][i]) {
t = Relations[typeNow][i][j]
e = Edges[s+";"+t]
for(var j in TW.Relations[typeNow][i]) {
t = TW.Relations[typeNow][i][j]
e = TW.Edges[s+";"+t]
if(e) {
if(e.source != e.target) {
var edge = ({
......@@ -69,7 +69,7 @@ function showMeSomeLabels(N){
maxIn=0,
minOut=50,
maxOut=0;
partialGraph.iterNodes(function(n){
TW.partialGraph.iterNodes(function(n){
if(n.hidden==false){
if(parseInt(n.inDegree) < minIn) minIn= n.inDegree;
if(parseInt(n.inDegree) > maxIn) maxIn= n.inDegree;
......@@ -100,51 +100,51 @@ function showMeSomeLabels(N){
if(counter==N) break;
}
}
partialGraph.draw()
TW.partialGraph.draw()
/*======= Show some labels at the beginning =======*/
}
function getnodes(){
return partialGraph._core.graph.nodes;
return TW.partialGraph._core.graph.nodes;
}
function getnodesIndex(){
return partialGraph._core.graph.nodesIndex;
return TW.partialGraph._core.graph.nodesIndex;
}
function getedges(){
return partialGraph._core.graph.edges;
return TW.partialGraph._core.graph.edges;
}
function getedgesIndex(){
return partialGraph._core.graph.edgesIndex;
return TW.partialGraph._core.graph.edgesIndex;
}
function getVisibleEdges() {
return partialGraph._core.graph.edges.filter(function(e) {
return TW.partialGraph._core.graph.edges.filter(function(e) {
return !e['hidden'];
});
}
function getVisibleNodes() {
return partialGraph._core.graph.nodes.filter(function(n) {
return TW.partialGraph._core.graph.nodes.filter(function(n) {
return !n['hidden'];
});
}
function getNodesByAtt(att) {
return partialGraph._core.graph.nodes.filter(function(n) {
return TW.partialGraph._core.graph.nodes.filter(function(n) {
return n['type']==att;
});
}
function getn(id){
return partialGraph._core.graph.nodesIndex[id];
return TW.partialGraph._core.graph.nodesIndex[id];
}
function gete(id){
return partialGraph._core.graph.edgesIndex[id];
return TW.partialGraph._core.graph.edgesIndex[id];
}
......@@ -182,7 +182,7 @@ function getNodeLabels(elems){
var labelss=[]
for(var i in elems){
var id=(!isUndef(elems[i].key))?elems[i].key:i
labelss.push(Nodes[id].label)
labelss.push(TW.Nodes[id].label)
}
return labelss
}
......@@ -195,7 +195,7 @@ function getNodeIDs(elems){
function getSelections(){
params=[];
for(var i in selections){
params.push(Nodes[i].label);
params.push(TW.Nodes[i].label);
}
return params;
}
......@@ -250,7 +250,7 @@ function clustersBy(daclass) {
var v_nodes = getVisibleNodes();
var min_pow = 0;
for(var i in v_nodes) {
var the_node = Nodes[ v_nodes[i].id ]
var the_node = TW.Nodes[ v_nodes[i].id ]
var attval = ( isUndef(the_node.attributes) || isUndef(the_node.attributes[daclass]) )? v_nodes[i][daclass]: the_node.attributes[daclass];
if( !isNaN(parseFloat(attval)) ) { //is float
while(true) {
......@@ -268,7 +268,7 @@ function clustersBy(daclass) {
var real_max = -1;
var themult = Math.pow(10,min_pow);
for(var i in v_nodes) {
var the_node = Nodes[ v_nodes[i].id ]
var the_node = TW.Nodes[ v_nodes[i].id ]
var attval = ( isUndef(the_node.attributes) || isUndef(the_node.attributes[daclass]) )? v_nodes[i][daclass]: the_node.attributes[daclass];
var attnumber = Number(attval);
var round_number = Math.round( attnumber*themult ) ;
......@@ -298,19 +298,19 @@ function clustersBy(daclass) {
var newval_color = Math.round( ( Min_color+(NodeID_Val[i]["round"]-real_min)*((Max_color-Min_color)/(real_max-real_min)) ) );
var hex_color = rgbToHex(255, (255-newval_color) , 0)
partialGraph._core.graph.nodesIndex[i].color = hex_color
TW.partialGraph._core.graph.nodesIndex[i].color = hex_color
var newval_size = Math.round( ( Min_size+(NodeID_Val[i]["round"]-real_min)*((Max_size-Min_size)/(real_max-real_min)) ) );
partialGraph._core.graph.nodesIndex[i].size = newval_size;
TW.partialGraph._core.graph.nodesIndex[i].size = newval_size;
// pr("real:"+ NodeID_Val[i]["real"] + " | newvalue: "+newval_size)
partialGraph._core.graph.nodesIndex[i].label = "("+NodeID_Val[i]["real"].toFixed(min_pow)+") "+Nodes[i].label
TW.partialGraph._core.graph.nodesIndex[i].label = "("+NodeID_Val[i]["real"].toFixed(min_pow)+") "+TW.Nodes[i].label
}
// [ / Scaling node colours(0-255) and sizes(3-5) ]
partialGraph.refresh();
partialGraph.draw();
TW.partialGraph.refresh();
TW.partialGraph.draw();
// [ Edge-colour by source-target nodes-colours combination ]
......@@ -324,15 +324,14 @@ function clustersBy(daclass) {
var r = (a[0] + b[0]) >> 1;
var g = (a[1] + b[1]) >> 1;
var b = (a[2] + b[2]) >> 1;
partialGraph._core.graph.edgesIndex[e_id].color = "rgba("+[r,g,b].join(",")+",0.5)";
TW.partialGraph._core.graph.edgesIndex[e_id].color = "rgba("+[r,g,b].join(",")+",0.5)";
}
// [ / Edge-colour by source-target nodes-colours combination ]
if(daclass!="degree")
set_ClustersLegend ( daclass )
set_ClustersLegend ( null )
partialGraph.refresh();
partialGraph.draw();
TW.partialGraph.refresh();
TW.partialGraph.draw();
}
function colorsBy(daclass) {
......@@ -346,9 +345,9 @@ function colorsBy(daclass) {
pr("")
if(daclass=="clust_louvain") {
if(!partialGraph.states.slice(-1)[0].LouvainFait) {
if(!TW.partialGraph.states.slice(-1)[0].LouvainFait) {
RunLouvain()
partialGraph.states.slice(-1)[0].LouvainFait = true
TW.partialGraph.states.slice(-1)[0].LouvainFait = true
}
}
......@@ -356,11 +355,11 @@ function colorsBy(daclass) {
colorList.sort(function(){ return Math.random()-0.5; });
for(var i in v_nodes) {
var the_node = Nodes[ v_nodes[i].id ]
var the_node = TW.Nodes[ v_nodes[i].id ]
var attval = ( isUndef(the_node.attributes) || isUndef(the_node.attributes[daclass]) )? v_nodes[i][daclass]: the_node.attributes[daclass];
partialGraph._core.graph.nodesIndex[v_nodes[i].id].color = colorList[ attval ]
TW.partialGraph._core.graph.nodesIndex[v_nodes[i].id].color = colorList[ attval ]
}
partialGraph.draw();
TW.partialGraph.draw();
// [ Edge-colour by source-target nodes-colours combination ]
var v_edges = getVisibleEdges();
......@@ -374,18 +373,18 @@ function colorsBy(daclass) {
var r = (a[0] + b[0]) >> 1;
var g = (a[1] + b[1]) >> 1;
var b = (a[2] + b[2]) >> 1;
partialGraph._core.graph.edgesIndex[e_id].color = "rgba("+[r,g,b].join(",")+",0.5)";
TW.partialGraph._core.graph.edgesIndex[e_id].color = "rgba("+[r,g,b].join(",")+",0.5)";
}
}
// [ / Edge-colour by source-target nodes-colours combination ]
set_ClustersLegend ( daclass )
partialGraph.refresh();
partialGraph.draw();
TW.partialGraph.refresh();
TW.partialGraph.draw();
}
//just for fun
function makeEdgeWeightUndef() {
for(var e in partialGraph._core.graph.edges) {
partialGraph._core.graph.edges[e].weight=1;
for(var e in TW.partialGraph._core.graph.edges) {
TW.partialGraph._core.graph.edges[e].weight=1;
}
}
\ No newline at end of file
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