[toml] remove pubmed api key from config

It's set up in user settings instead and has been for a long time.

bin/gargantext-cli/CLI/Ini.hs

@@ -76,8 +76,7 @@ convertConfigs ini@(Ini.GargConfig { .. }) iniMail nlpConfig connInfo =
                                                    , _jc_max_docs_scrapers = _gc_max_docs_scrapers
                                                    , _jc_js_job_timeout = _gc_js_job_timeout
                                                    , _jc_js_id_timeout = _gc_js_id_timeout }
-                    , _gc_apis = CTypes.APIsConfig { _ac_pubmed_api_key = _gc_pubmed_api_key
-                                                   , _ac_epo_api_url = _gc_epo_api_url
+                    , _gc_apis = CTypes.APIsConfig { _ac_epo_api_url = _gc_epo_api_url
                                                    , _ac_scrapyd_url }
                     , _gc_log_level = LevelDebug
                     }

gargantext-settings.toml_toModify

@@ -59,9 +59,6 @@ data_filepath = FILEPATH_TO_CHANGE
 
 [apis]
 
-[apis.pubmed]
-api_key = ENTER_PUBMED_API_KEY
-
 [apis.epo]
 api_url = EPO_API_URL
 

src/Gargantext/Core/Config/Types.hs

@@ -15,7 +15,6 @@ TODO-SECURITY: Critical
 
 module Gargantext.Core.Config.Types
   ( APIsConfig(..)
-  , ac_pubmed_api_key
   , ac_epo_api_url
   , ac_scrapyd_url
   , CORSOrigin(..)
@@ -299,13 +298,11 @@ makeLenses ''JobsConfig
 
 
 data APIsConfig =
-  APIsConfig { _ac_pubmed_api_key :: !Text
-             , _ac_epo_api_url    :: !Text
+  APIsConfig { _ac_epo_api_url    :: !Text
              , _ac_scrapyd_url    :: !BaseUrl }
   deriving (Generic, Show)
 instance FromValue APIsConfig where
   fromValue = parseTableFromValue $ do
-    _ac_pubmed_api_key <- reqKeyOf "pubmed" $ parseTableFromValue $ reqKey "api_key"
     _ac_epo_api_url <- reqKeyOf "epo" $ parseTableFromValue $ reqKey "api_url"
     scrapyd_url <- reqKeyOf "scrapyd" $ parseTableFromValue $ reqKey "url"
     _ac_scrapyd_url <-
@@ -316,8 +313,7 @@ instance FromValue APIsConfig where
 instance ToValue APIsConfig where
   toValue = defaultTableToValue
 instance ToTable APIsConfig where
-  toTable (APIsConfig { .. }) = table [ "pubmed" .= table [ "api_key" .= _ac_pubmed_api_key ]
-                                      , "epo" .= table [ "api_url" .= _ac_epo_api_url ]
+  toTable (APIsConfig { .. }) = table [ "epo" .= table [ "api_url" .= _ac_epo_api_url ]
                                       , "scrapyd" .= table [ "url" .= showBaseUrl _ac_scrapyd_url ]
                                       ]