In particular:

* In ngrams search tests where we were comparing the total number of
  results returned, we need to account only for the roots, because the
  total number we would be returning from the pagination would be
  higher, as it would include children, in some cases;
* In the `AcyclipTableMap` generator, the roots we generate need to be
  so (i.e. `_ne_root` and `_ne_parent` must be `Nothing`).

After we rewrote `destroyForest`, it means that in normal conditions we
are going to output roots followed by their nodes (in in-order
ordering), so the test outputs need adjustments.

Destroying a forest should flatten any recursive children, or they won't
show up in the final ngrams table.

add missing module

See merge request !444

Add the ability to emit logging messages from a `DbTx` transaction

Closes #499

See merge request !436

Prevent importing ngrams which will lead to loops

See merge request !435

[CLI] db fix command, to fix hyperdata #630

See merge request !442

[search] small refactoring of the search API

See merge request !441

Dry run mode enabled by default

[API] version with git hash

See merge request !422

[cli] add support to spawn multiple workers of the same type

See merge request !437

Also, added `worker run-single-job` because the `run-single` option
was a bit confusing.

This avoids creating pathological ngram forests.

Allow ngrams to be searched even if they appear deeply nested

See merge request !433

In this test we check that if we start with an ngram forest, no matter
how complex, we can always search for a term we know it's in the forest
and get it back, possibly alongside others.

Resolve "Move corenlp to separate repo/flake"

Closes #483

See merge request !434

commit 4f25aa65
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Sat Aug 2 13:04:35 2025 +0200

    [CI] sudo with chown at the end of tests

commit a4d26226
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Sat Aug 2 06:55:27 2025 +0200

    [CI] no /root/.config needed

commit 1f8eaa0b
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 21:27:01 2025 +0200

    [CI] more permission fixes

commit c4d9b175
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 20:43:09 2025 +0200

    [CI] more permission fixes for gitlab-ci

commit f85213fd
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 19:34:35 2025 +0200

    [CI] add sudo to dockerfile, change dir owner in CI

commit f14c6246
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Aug 1 08:42:32 2025 +0200

    [CI] modify dockerfile to build with test user

commit 1670cc4a
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 31 19:20:10 2025 +0200

    [CI] add verbose=2 for testing to check what is happening with CI timeouts

commit 210ba723
Merge: 1a213aeb 27192b88
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 31 09:22:52 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit 1a213aeb
Merge: d7aa1301 61aac410
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Jul 29 18:58:07 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit d7aa1301
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Jul 25 09:57:38 2025 +0200

    [CI] one more try to fix nix permission

commit b45e16eb
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Jul 11 07:24:53 2025 +0200

    [CI] writable permissions for nix db

commit 50f13d32
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 16:34:01 2025 +0200

    [CI] attempt at fixing nix db permissions

commit 76c1b9a6
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 14:44:55 2025 +0200

    [CI] fix /nix dir permissions

    Apparently, this is needed to run 'nix' inside tests (e.g. start corenlp)

commit 7edb97af
Merge: 19e752b8 64e2a689
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 11:56:04 2025 +0200

    Merge branch 'dev' into 483-dev-corenlp-in-nix-flake

commit 19e752b8
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 11:47:58 2025 +0200

    [tests] better startup of corenlp

    Take into account the async nature of createProcess. Add proper watch
    so that we monitor that coreNLP is running.

commit bde033f9
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 10:47:36 2025 +0200

    [nix] fix stdenv to be gcc 14, not 13

commit 1d4ceb07
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 10 07:03:15 2025 +0200

    [nix] add openblas as a dependency

commit 9dd4ebc3
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 9 14:44:28 2025 +0200

    [update-project-dependencie]

commit 120e205c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 9 12:50:38 2025 +0200

    [corenlp] some fixes to Dockerfile

commit 3a2b2079
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 3 19:21:37 2025 +0200

    [dockerfile] add fontconfig, to see if this is what causes errors on CI

    E.g.:
    https://gitlab.iscpif.fr/gargantext/haskell-gargantext/-/jobs/18643

    paginating QuantumComputing corpus works (MapTerms):            Fontconfig error: Cannot load default config file: No such file: (null)
    Fontconfig error: No writable cache directories

commit d9d4a09c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Jul 3 14:02:30 2025 +0200

    [nix] don't use experimental features for corenlp nix call

    Also, update Dockerfile with patched `nix.conf`

commit 5ccb44bb
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 2 21:05:47 2025 +0200

    [test] fix calling of nix flakes

commit 1adc512e
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Jul 2 19:42:29 2025 +0200

    [nix] move corenlp to separate flake in core-nix repo

    #483

Resolve "[Node Terms] On multiple Map terms, if the first term is already a map term, the count of the multiple map term is to zero"

Closes #471

See merge request !414

Ref #488