1. 15 Oct, 2024 1 commit
    • Przemyslaw Kaminski's avatar
      Squashed commit of the following: · b2a6b741
      Przemyslaw Kaminski authored
      commit 3030272d
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Thu Oct 10 18:31:19 2024 +0200
      
          [VERSION] +1 to 0.0.7.3.2
      
      commit bd33dd6c
      Merge: 1d3417d9 592d966c
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Thu Oct 10 18:10:51 2024 +0200
      
          Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev
      
      commit 592d966c
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Thu Oct 10 18:06:20 2024 +0200
      
          [notifications] add missing test/Test/Core/Notifications.hs
      
      commit 1d3417d9
      Merge: 163304df a48fe0c8
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Thu Oct 10 17:54:39 2024 +0200
      
          Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev
      
      commit a48fe0c8
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Thu Oct 10 10:01:10 2024 +0200
      
          [ws] rename AsyncUpdates to Notifications
      
          This is bit more clear
      
      commit cd831db4
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Wed Oct 9 16:00:48 2024 +0200
      
          [tests] first working notification test
      
      commit 81af005d
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Wed Oct 9 11:05:11 2024 +0200
      
          Squashed commit of the following:
      
          commit 163304df
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 18:39:54 2024 +0200
      
              [FIX] conflict
      
          commit 82c68074
          Merge: f7b76918 5623161c
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 18:28:55 2024 +0200
      
              Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev
      
          commit f7b76918
          Merge: fe7a92cc 88655f68
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 18:28:53 2024 +0200
      
              [FIX] conflicts
      
          commit fe7a92cc
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 17:19:53 2024 +0200
      
              fix: no longer update graphs and phylos on corpus update
      
          commit f775d4a3
          Merge: 76b557ea d2f4b89d
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 16:27:53 2024 +0200
      
              Merge remote-tracking branch 'origin/dev-guidelines-update' into dev
      
          commit 76b557ea
          Merge: 2925d008 50c77ea2
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 16:27:27 2024 +0200
      
              Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev
      
          commit d2f4b89d
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 15:37:54 2024 +0200
      
              DEVELOPER_GUIDELINES: update about git amend
      
              This is the result of Autumn workshop 2024
      
          commit 50c77ea2
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 15:15:28 2024 +0200
      
              [notifications] fix for send
      
              sendNonblocking threw an error initially. I just do a compromise and
              timeout the normal send (which blocks infinitely sometimes)
      
          commit 025b80b6
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 14:10:56 2024 +0200
      
              [docker] fix network: host, fix caddyfile
      
          commit 2925d008
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 10:34:17 2024 +0200
      
              fix arbitrary instance
      
          commit e8fb3db6
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 10:13:40 2024 +0200
      
              fix: re-add lost instances
      
          commit b86d2e61
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 10:09:18 2024 +0200
      
              [toml] remove pubmed api key from config
      
              It's set up in user settings instead and has been for a long time.
      
          commit c06de5ef
          Merge: ab710337 a0ec337b
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 09:35:55 2024 +0200
      
              Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button
      
          commit ab710337
          Author: Christian Merten <christian@merten.dev>
          Date:   Fri Apr 26 22:32:33 2024 +0200
      
              feat: update corpus endpoint
      
      commit d4a9200e
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Wed Oct 9 11:01:43 2024 +0200
      
          [ws] notification action on node share
      
      commit 163304df
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Tue Oct 8 18:39:54 2024 +0200
      
          [FIX] conflict
      
      commit 82c68074
      Merge: f7b76918 5623161c
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Tue Oct 8 18:28:55 2024 +0200
      
          Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev
      
      commit f7b76918
      Merge: fe7a92cc 88655f68
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Tue Oct 8 18:28:53 2024 +0200
      
          [FIX] conflicts
      
      commit 5623161c
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 18:18:23 2024 +0200
      
          [ws] implement node update (rename, move) with notifications to parents
      
      commit 88655f68
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 18:05:25 2024 +0200
      
          Squashed commit of the following:
      
          commit f775d4a3
          Merge: 76b557ea d2f4b89d
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 16:27:53 2024 +0200
      
              Merge remote-tracking branch 'origin/dev-guidelines-update' into dev
      
          commit 76b557ea
          Merge: 2925d008 50c77ea2
          Author: Alexandre Delanoë <devel+git@delanoe.org>
          Date:   Tue Oct 8 16:27:27 2024 +0200
      
              Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev
      
          commit d2f4b89d
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 15:37:54 2024 +0200
      
              DEVELOPER_GUIDELINES: update about git amend
      
              This is the result of Autumn workshop 2024
      
          commit 50c77ea2
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 15:15:28 2024 +0200
      
              [notifications] fix for send
      
              sendNonblocking threw an error initially. I just do a compromise and
              timeout the normal send (which blocks infinitely sometimes)
      
          commit 025b80b6
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 14:10:56 2024 +0200
      
              [docker] fix network: host, fix caddyfile
      
          commit 2925d008
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 10:34:17 2024 +0200
      
              fix arbitrary instance
      
          commit e8fb3db6
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 10:13:40 2024 +0200
      
              fix: re-add lost instances
      
          commit b86d2e61
          Author: Przemysław Kaminski <pk@intrepidus.pl>
          Date:   Tue Oct 8 10:09:18 2024 +0200
      
              [toml] remove pubmed api key from config
      
              It's set up in user settings instead and has been for a long time.
      
          commit c06de5ef
          Merge: ab710337 a0ec337b
          Author: Christian Merten <christian@merten.dev>
          Date:   Tue Oct 8 09:35:55 2024 +0200
      
              Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button
      
          commit ab710337
          Author: Christian Merten <christian@merten.dev>
          Date:   Fri Apr 26 22:32:33 2024 +0200
      
              feat: update corpus endpoint
      
      commit fe7a92cc
      Author: Christian Merten <christian@merten.dev>
      Date:   Tue Oct 8 17:19:53 2024 +0200
      
          fix: no longer update graphs and phylos on corpus update
      
      commit f775d4a3
      Merge: 76b557ea d2f4b89d
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Tue Oct 8 16:27:53 2024 +0200
      
          Merge remote-tracking branch 'origin/dev-guidelines-update' into dev
      
      commit 76b557ea
      Merge: 2925d008 50c77ea2
      Author: Alexandre Delanoë <devel+git@delanoe.org>
      Date:   Tue Oct 8 16:27:27 2024 +0200
      
          Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev
      
      commit d2f4b89d
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 15:37:54 2024 +0200
      
          DEVELOPER_GUIDELINES: update about git amend
      
          This is the result of Autumn workshop 2024
      
      commit 50c77ea2
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 15:15:28 2024 +0200
      
          [notifications] fix for send
      
          sendNonblocking threw an error initially. I just do a compromise and
          timeout the normal send (which blocks infinitely sometimes)
      
      commit 025b80b6
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 14:10:56 2024 +0200
      
          [docker] fix network: host, fix caddyfile
      
      commit ee0db8c1
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 12:39:12 2024 +0200
      
          [nix] add nanomsg to nix pkgs
      
          Also, fix ./start to use gargantext-settings.toml
      
      commit 2925d008
      Author: Christian Merten <christian@merten.dev>
      Date:   Tue Oct 8 10:34:17 2024 +0200
      
          fix arbitrary instance
      
      commit e8fb3db6
      Author: Christian Merten <christian@merten.dev>
      Date:   Tue Oct 8 10:13:40 2024 +0200
      
          fix: re-add lost instances
      
      commit b86d2e61
      Author: Przemysław Kaminski <pk@intrepidus.pl>
      Date:   Tue Oct 8 10:09:18 2024 +0200
      
          [toml] remove pubmed api key from config
      
          It's set up in user settings instead and has been for a long time.
      
      commit c06de5ef
      Merge: ab710337 a0ec337b
      Author: Christian Merten <christian@merten.dev>
      Date:   Tue Oct 8 09:35:55 2024 +0200
      
          Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button
      
      commit ab710337
      Author: Christian Merten <christian@merten.dev>
      Date:   Fri Apr 26 22:32:33 2024 +0200
      
          feat: update corpus endpoint
      b2a6b741
  2. 10 Oct, 2024 1 commit
  3. 02 Sep, 2024 1 commit
    • Alfredo Di Napoli's avatar
      ws: remove calls to recvMalloc · 15b732f5
      Alfredo Di Napoli authored
      Remove the calls to `recvMalloc` in favour of using the (patched) `recv`
      from the original nanomsg library, which shouldn't segfault anymore. The
      reason for using `recv` are a few, but mostly the fact that `recv` can
      allocated arbitrary-long payloads data (up to the 1MB limit) without an
      hardcoded limit like `recvMalloc` was imposing. Furthermore, `recv` does
      resource cleanup for us via `c_nn_freemsg`, whereas `recvMalloc` is not
      thread/exception safe. Consider the implementation:
      
      ```
      recvMalloc :: Receiver a => Socket a -> Int -> IO ByteString
      recvMalloc (Socket t sid) numBytes = do
        ptr <- mallocBytes numBytes
        -- receive by blocking the thread
        len <- c_nn_recv sid ptr (#const NN_MSG) 0 -- (#const NN_DONTWAIT)
        str <- C.packCStringLen (castPtr ptr, fromIntegral len)
        free ptr
        return str
      ```
      
      If any exception (synchronous or asynchronous) strikes _before_ the call
      to `free`, we would be leaking C memory.
      15b732f5
  4. 30 Aug, 2024 1 commit
  5. 17 Jun, 2024 2 commits
  6. 05 Jun, 2024 1 commit
  7. 29 May, 2024 1 commit
  8. 25 May, 2024 1 commit
  9. 23 May, 2024 1 commit
    • Przemyslaw Kaminski's avatar
      [websockets] initial implementation of async notifications · 9de83328
      Przemyslaw Kaminski authored
      I'm currently able to do the following:
      - start gargantext-server (as it hosts central exchange and
      dispatcher, currently)
      - start a websocket connection:
        websocat ws://localhost:8008/ws
      - subscibe to a topic (in websocat):
        {"request": "subscribe", "topic": {"type": "update_tree", "node_id":
        15}}
      - optionally subscibe to other node_ids or start other websocat's with
        different subscriptions (can be multiple)
      - fire up
        cabal v2-run gargantext-central-exchange -- client
        This triggers a node_id: 15 and node_id: 16 notification to be sent
      
      You can send your own notifications, e.g. with Python:
      import json
      import nanomsg as n
      s = n.Socket(n.PUSH)
      s.connect('tcp://localhost:5560')
      s.send(json.dumps({'type': 'update_tree_first_level', 'node_id': 15}))
      9de83328
  10. 22 May, 2024 1 commit