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  1. 29 Jan, 2025 1 commit
    • Przemyslaw Kaminski's avatar
      Squashed commit of the following: · 942e663f
      Przemyslaw Kaminski authored 
      commit b4755ad5
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Wed Jan 29 11:41:32 2025 +0100

    Code review, part II

    This commit splits the /export (renaming it to just remote) and tuck it
    under the /node hierarchy. The import also lives tucked in the /node.

commit 483bd3e5
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Tue Jan 28 09:34:14 2025 +0100

    Code review feedback

    * Rename `exampleS` into `exampleSchema`;
    * Revert commit about the public keys & co;

commit 18d207f0
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Tue Jan 28 09:50:56 2025 +0100

    Revert "Add _env_remote_transfer_keys field"

    This reverts commit 3ea32b50.

commit 9cc5159a
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 20 10:00:53 2025 +0100

    Support transfering of notes

commit 1fe60d75
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Fri Jan 17 08:37:53 2025 +0100

    Refactor exporting and transfering of nodes

commit b39c1805
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Thu Jan 16 09:54:38 2025 +0100

    Preliminary work to transfer notes

commit b2f7a9a8
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 13 15:25:34 2025 +0100

    Chunks the insertion of remote docs

commit 0d4e0554
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 13 14:43:16 2025 +0100

    Move terms updating to separate job as well

commit c62480c7
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 13 12:30:19 2025 +0100

    Proper support for importing documents

commit 6019587c
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 15:44:13 2025 +0100

    Initial support for importing ngrams

commit 842b3d36
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 15:07:21 2025 +0100

    Support exporting docs and ngrams (but not importing them yet)

commit 98708c2e
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 12:32:17 2025 +0100

    Support exporting of tree hierarchies (with proviso)

    Exporting a corpus works, as it also exports its children, but for
    example the docs and terms nodes do not have any associated content.
    This is because those are stored in separate DB tables, and we need
    to find a way to export those as well.

commit c248eaf1
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 11:50:14 2025 +0100

    Support trees of export nodes (to be tested)

commit dd2049aa
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 11:23:30 2025 +0100

    Add getNodes function to Database.Query.Table.Node

commit c429cbb1
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 10:39:37 2025 +0100

    Restrict export of nodes to only a few types

commit c648699e
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Jan 6 09:27:28 2025 +0100

    Update deps again (after rebase)

commit 7337820e
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 16:07:49 2024 +0100

    Basic Remote API testing

commit 1eb59c52
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 15:31:47 2024 +0100

    Barebone (non-streaming) storage of nodes

commit be5e9faf
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 14:20:16 2024 +0100

    Send serialised nodes instead of dummy strings

commit aff15b60
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 12:07:49 2024 +0100

    Remove redundant test imports

commit 6d776767
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 12:01:55 2024 +0100

    Bolt-on ownership check for /remote/export

commit 58d9fcb0
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 16 11:08:11 2024 +0100

    Proper error handling for remote import and export handlers

commit 23a06d28
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 9 15:37:29 2024 +0100

    Update project deps

commit d5096e40
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 2 17:05:04 2024 +0100

    Make a start on the remote (streaming) endpoints

    It typechecks but it exchange only a very simple string and
    it prints it.

commit 3ea32b50
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Dec 2 11:26:11 2024 +0100

    Add _env_remote_transfer_keys field

    This adds a new randomly-generated pair of (PublicKey, PrivateKey) to be
    later used to send messages between instances.

    It also:

    * Returns a remote transfer pub key inside an AuthResponse
    * Adds pubKey roundtrip test
      942e663f
  3. 09 Jan, 2025 2 commits
  5. 18 Dec, 2024 1 commit
  7. 10 Dec, 2024 1 commit
  9. 09 Dec, 2024 1 commit
  11. 06 Dec, 2024 1 commit
    • Grégoire Locqueville's avatar
      Removed a bunch of build warnings · 1e10b29f
      Grégoire Locqueville authored 
      I fixed those warnings that were easy to fix: redundant imports, unused
variables, etc. (I might have missed some though)

The warnings I deliberately left for now are:
* In `Test.API.UpdateList`: Incomplete pattern matching (we would need
  to think a bit about error handling to fix this)
* In `Test.Utils`: `traceShowId` remains in code (we would need to think
  a bit about proper logging to fix this)
      1e10b29f
  13. 29 Nov, 2024 2 commits
  15. 26 Nov, 2024 2 commits
  17. 25 Nov, 2024 1 commit
  19. 21 Nov, 2024 3 commits
  21. 19 Nov, 2024 5 commits
  23. 18 Nov, 2024 3 commits
  25. 14 Nov, 2024 3 commits
  27. 13 Nov, 2024 3 commits
  29. 11 Nov, 2024 10 commits
  31. 07 Nov, 2024 1 commit
    • Przemyslaw Kaminski's avatar
      Squashed commit of the following: · 83c8708f
      Przemyslaw Kaminski authored 
      commit 0bbbba60
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Mon Nov 4 15:42:58 2024 +0100

    [VERSION] +1 to 0.0.7.3.6

commit 503f79e5
Merge: 7b630704 fff00f20
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Mon Nov 4 15:12:49 2024 +0100

    Merge remote-tracking branch 'origin/689-dev-graph-legend-show-all-clusters' into dev

commit 7b630704
Merge: c1eede02 c08eb0a0
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Mon Nov 4 15:12:31 2024 +0100

    Merge remote-tracking branch 'origin/adinapoli/issue-409' into dev

commit c08eb0a0
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 28 09:38:49 2024 +0100

    Fix Phylo golden tests for new field

commit 504b2514
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 28 08:48:22 2024 +0100

    Thread old compute time in flowPhyloAPI

    This allows us to collect a /history/ of computing times.

commit 7beb5d72
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Thu Oct 24 09:11:56 2024 +0200

    computeTime field in now optional

commit 2fd9c3e9
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Tue Oct 15 09:55:55 2024 +0200

    Add JSON roundtrip tests

commit 775aab73
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Tue Oct 15 09:21:49 2024 +0200

    Measure Phylo time via trackComputeTime

    The tracking is not perfect yet, as it keeps storing only the latest
    available compute time. Also, there seems to be some precision loss
    between that is reported by `timeMeasured` and what gets stored in the
    DB.

commit 41e31471
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 14 15:43:29 2024 +0200

    Add ComputeTimeHistory to Phylo type

commit fff00f20
Merge: 3da7a409 2df4c3bd
Author: Karen Konou <konoukaren@gmail.com>
Date:   Fri Oct 25 09:47:42 2024 +0200

    Merge branch 'dev' into 689-dev-graph-legend-show-all-clusters

commit c1eede02
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Fri Oct 18 12:46:13 2024 +0200

    [tests] fix notifications test

    This was because WS connection wasn't closed properly.

commit 2df4c3bd
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Thu Oct 24 13:59:06 2024 +0200

    [FIX] Module name

commit c9bea7e5
Merge: 9c2f627d 24a1767f
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Thu Oct 24 12:49:24 2024 +0200

    [Merge] Fix conflicts. I got error here at Test/API/Notifications.hs

commit 24a1767f
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Thu Oct 24 08:33:37 2024 +0200

    Fix TestName typo

commit 3b3fe772
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Thu Oct 24 08:33:15 2024 +0200

    Restore Phylo tests

commit 3da7a409
Author: Karen Konou <konoukaren@gmail.com>
Date:   Mon Oct 21 17:37:42 2024 +0200

    [Graph] Generate legend when computing graph

commit 3eebda86
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Wed Oct 23 10:24:18 2024 +0200

    Make Phylo tests using tasty-golden properly

commit 9c2f627d
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Wed Oct 23 10:17:54 2024 +0200

    [VERSION] +1 to 0.0.7.3.5

commit 893b4cf8
Author: yacourt <acourt.yoelis@gmail.com>
Date:   Mon Oct 21 15:10:44 2024 +0200

    fix(ngrams): occurences counting with quotes

commit 2770f5e7
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Fri Oct 18 09:45:56 2024 +0200

    [VERSION] +1 to 0.0.7.3.4

commit 27413399
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 15 16:17:10 2024 +0200

    [VERSION] +1 to 0.0.7.3.3

commit f1d6a083
Merge: 0143f243 afdbe31d
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 15 15:45:40 2024 +0200

    Merge remote-tracking branch 'origin/improve-onboarding-experience' into dev

commit 0143f243
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 14 13:45:12 2024 +0200

    Fix step1c again

commit 43901901
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 14 12:39:43 2024 +0200

    Fix bug in GargPorter implementation

commit d44831d0
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 14 10:50:31 2024 +0200

    Introduce SpecContext, replicate search issue

    This commit refactors the test code ever so slightly to add a proper
    type called `SpecContext` rather than anonymous pairs to carry around
    the spec context/data. It also replicates the search problem around #415
    via a test.

commit b4260d9b
Author: Alfredo Di Napoli <alfredo.dinapoli@gmail.com>
Date:   Mon Oct 14 09:11:51 2024 +0200

    Add soysauce docs list to test-data

commit afdbe31d
Author: Grégoire Locqueville <gregoire.locqueville@cnrs.fr>
Date:   Thu Oct 10 18:51:46 2024 +0200

    Improve onboarding experience

    Edited the README to have a linear path to installation.
    Also made scripts to run the executables without having to worry
    whether they are on our path.

commit 3030272d
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Thu Oct 10 18:31:19 2024 +0200

    [VERSION] +1 to 0.0.7.3.2

commit bd33dd6c
Merge: 1d3417d9 592d966c
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Thu Oct 10 18:10:51 2024 +0200

    Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev

commit 592d966c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Oct 10 18:06:20 2024 +0200

    [notifications] add missing test/Test/Core/Notifications.hs

commit 1d3417d9
Merge: 163304df a48fe0c8
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Thu Oct 10 17:54:39 2024 +0200

    Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev

commit a48fe0c8
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Thu Oct 10 10:01:10 2024 +0200

    [ws] rename AsyncUpdates to Notifications

    This is bit more clear

commit cd831db4
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Oct 9 16:00:48 2024 +0200

    [tests] first working notification test

commit 81af005d
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Oct 9 11:05:11 2024 +0200

    Squashed commit of the following:

    commit 163304df
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 18:39:54 2024 +0200

        [FIX] conflict

    commit 82c68074
    Merge: f7b76918 5623161c
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 18:28:55 2024 +0200

        Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev

    commit f7b76918
    Merge: fe7a92cc 88655f68
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 18:28:53 2024 +0200

        [FIX] conflicts

    commit fe7a92cc
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 17:19:53 2024 +0200

        fix: no longer update graphs and phylos on corpus update

    commit f775d4a3
    Merge: 76b557ea d2f4b89d
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 16:27:53 2024 +0200

        Merge remote-tracking branch 'origin/dev-guidelines-update' into dev

    commit 76b557ea
    Merge: 2925d008 50c77ea2
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 16:27:27 2024 +0200

        Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev

    commit d2f4b89d
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 15:37:54 2024 +0200

        DEVELOPER_GUIDELINES: update about git amend

        This is the result of Autumn workshop 2024

    commit 50c77ea2
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 15:15:28 2024 +0200

        [notifications] fix for send

        sendNonblocking threw an error initially. I just do a compromise and
        timeout the normal send (which blocks infinitely sometimes)

    commit 025b80b6
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 14:10:56 2024 +0200

        [docker] fix network: host, fix caddyfile

    commit 2925d008
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 10:34:17 2024 +0200

        fix arbitrary instance

    commit e8fb3db6
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 10:13:40 2024 +0200

        fix: re-add lost instances

    commit b86d2e61
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 10:09:18 2024 +0200

        [toml] remove pubmed api key from config

        It's set up in user settings instead and has been for a long time.

    commit c06de5ef
    Merge: ab710337 a0ec337b
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 09:35:55 2024 +0200

        Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button

    commit ab710337
    Author: Christian Merten <christian@merten.dev>
    Date:   Fri Apr 26 22:32:33 2024 +0200

        feat: update corpus endpoint

commit d4a9200e
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Wed Oct 9 11:01:43 2024 +0200

    [ws] notification action on node share

commit 163304df
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 8 18:39:54 2024 +0200

    [FIX] conflict

commit 82c68074
Merge: f7b76918 5623161c
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 8 18:28:55 2024 +0200

    Merge remote-tracking branch 'origin/dev-websockets-node-update' into dev

commit f7b76918
Merge: fe7a92cc 88655f68
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 8 18:28:53 2024 +0200

    [FIX] conflicts

commit 5623161c
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 18:18:23 2024 +0200

    [ws] implement node update (rename, move) with notifications to parents

commit 88655f68
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 18:05:25 2024 +0200

    Squashed commit of the following:

    commit f775d4a3
    Merge: 76b557ea d2f4b89d
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 16:27:53 2024 +0200

        Merge remote-tracking branch 'origin/dev-guidelines-update' into dev

    commit 76b557ea
    Merge: 2925d008 50c77ea2
    Author: Alexandre Delanoë <devel+git@delanoe.org>
    Date:   Tue Oct 8 16:27:27 2024 +0200

        Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev

    commit d2f4b89d
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 15:37:54 2024 +0200

        DEVELOPER_GUIDELINES: update about git amend

        This is the result of Autumn workshop 2024

    commit 50c77ea2
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 15:15:28 2024 +0200

        [notifications] fix for send

        sendNonblocking threw an error initially. I just do a compromise and
        timeout the normal send (which blocks infinitely sometimes)

    commit 025b80b6
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 14:10:56 2024 +0200

        [docker] fix network: host, fix caddyfile

    commit 2925d008
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 10:34:17 2024 +0200

        fix arbitrary instance

    commit e8fb3db6
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 10:13:40 2024 +0200

        fix: re-add lost instances

    commit b86d2e61
    Author: Przemysław Kaminski <pk@intrepidus.pl>
    Date:   Tue Oct 8 10:09:18 2024 +0200

        [toml] remove pubmed api key from config

        It's set up in user settings instead and has been for a long time.

    commit c06de5ef
    Merge: ab710337 a0ec337b
    Author: Christian Merten <christian@merten.dev>
    Date:   Tue Oct 8 09:35:55 2024 +0200

        Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button

    commit ab710337
    Author: Christian Merten <christian@merten.dev>
    Date:   Fri Apr 26 22:32:33 2024 +0200

        feat: update corpus endpoint

commit fe7a92cc
Author: Christian Merten <christian@merten.dev>
Date:   Tue Oct 8 17:19:53 2024 +0200

    fix: no longer update graphs and phylos on corpus update

commit f775d4a3
Merge: 76b557ea d2f4b89d
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 8 16:27:53 2024 +0200

    Merge remote-tracking branch 'origin/dev-guidelines-update' into dev

commit 76b557ea
Merge: 2925d008 50c77ea2
Author: Alexandre Delanoë <devel+git@delanoe.org>
Date:   Tue Oct 8 16:27:27 2024 +0200

    Merge remote-tracking branch 'origin/304-dev-pubmed-api-not-in-toml' into dev

commit d2f4b89d
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 15:37:54 2024 +0200

    DEVELOPER_GUIDELINES: update about git amend

    This is the result of Autumn workshop 2024

commit 50c77ea2
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 15:15:28 2024 +0200

    [notifications] fix for send

    sendNonblocking threw an error initially. I just do a compromise and
    timeout the normal send (which blocks infinitely sometimes)

commit 025b80b6
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 14:10:56 2024 +0200

    [docker] fix network: host, fix caddyfile

commit ee0db8c1
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 12:39:12 2024 +0200

    [nix] add nanomsg to nix pkgs

    Also, fix ./start to use gargantext-settings.toml

commit 2925d008
Author: Christian Merten <christian@merten.dev>
Date:   Tue Oct 8 10:34:17 2024 +0200

    fix arbitrary instance

commit e8fb3db6
Author: Christian Merten <christian@merten.dev>
Date:   Tue Oct 8 10:13:40 2024 +0200

    fix: re-add lost instances

commit b86d2e61
Author: Przemysław Kaminski <pk@intrepidus.pl>
Date:   Tue Oct 8 10:09:18 2024 +0200

    [toml] remove pubmed api key from config

    It's set up in user settings instead and has been for a long time.

commit c06de5ef
Merge: ab710337 a0ec337b
Author: Christian Merten <christian@merten.dev>
Date:   Tue Oct 8 09:35:55 2024 +0200

    Merge remote-tracking branch 'gitlab/dev' into cm/update-corpus-button

commit ab710337
Author: Christian Merten <christian@merten.dev>
Date:   Fri Apr 26 22:32:33 2024 +0200

    feat: update corpus endpoint
      83c8708f